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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916892
Clone id YMU001_000093_C08
Library
Length 503
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000093_C08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTTCGGTGATAGAACCAGGCAATTGTTGCTTTTGCTCGACGAAGTCTATCTTTTGAAAGA
CAGTAGCCTTGAGATGTAAATCCCAAAACTTGTCCACATATAGTGGATAGACTCATGGGA
GAGCAGCTTCAAACTTCGCCATTTGGTAAGAACTTTGTCCTTTGCATCACTTGCAAGGAA
TATCTCTATGATGGAAACTCATAAAGTTTTCCATGTCTTTGGGGCTGCACCATTGCCACG
AAGGCTAGCCCATCATTGACAAGCAGATTTTTTGAAGTGCATAGCTACATGATGTAGCTT
GGAGGACTTCGTGAAGCCCTCATCTCCAAAGGCCGCATCAAATTGCTGGATGAAGGCCAA
TACTTTGTCGATATTACCAAAGGTGCCATCATAGGTGAGAAAAGAAATAATCTTTCCTCC
CTCTTTGAACTTCTTGAGCTTTTGGGACATTTGCCATGCAGGGTAAGATTTGCAATGTCC
TCCCCTCTGCCATGCAGGTACTC
■■Homology search results ■■ -
sp_hit_id Q9PK60
Definition sp|Q9PK60|UVRA_CHLMU UvrABC system protein A OS=Chlamydia muridarum
Align length 101
Score (bit) 32.0
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916892|Adiantum capillus-veneris mRNA, clone:
YMU001_000093_C08.
         (503 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9PK60|UVRA_CHLMU UvrABC system protein A OS=Chlamydia murida...    32   1.7  
sp|Q8U1N4|Y1172_PYRFU Uncharacterized RNA methyltransferase PF11...    30   4.9  
sp|P14547|POL2_BRSV RNA2 polyprotein OS=Beet ringspot virus PE=3...    30   4.9  
sp|Q8BFR2|FSTL5_MOUSE Follistatin-related protein 5 OS=Mus muscu...    30   4.9  
sp|Q03603|DGK3_CAEEL Probable diacylglycerol kinase 3 OS=Caenorh...    30   6.4  
sp|Q8CRT8|PCRB_STAES Putative glycerol-1-phosphate prenyltransfe...    30   8.3  
sp|Q5HN28|PCRB_STAEQ Putative glycerol-1-phosphate prenyltransfe...    30   8.3  

>sp|Q9PK60|UVRA_CHLMU UvrABC system protein A OS=Chlamydia muridarum
            GN=uvrA PE=3 SV=1
          Length = 1787

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 22/101 (21%), Positives = 44/101 (43%), Gaps = 17/101 (16%)
 Frame = -2

Query: 283  YALQKICLSMMG*PSWQWCSPKDM-----ENFMSFHHRDIPCK*CKGQSSYQMAK----- 134
            ++ QK+CL  +  P +     K M      NF ++   + PC  C+G  +Y         
Sbjct: 1259 HSFQKLCLGTLQNPGFDALCTKAMLAHPTTNFPTYLISETPCNQCQGNGTYTYEHCTRIH 1318

Query: 133  -------FEAALP*VYPLYVDKFWDLHLKATVFQKIDFVEQ 32
                   +++ +P +    +    DL L + +FQK++ +E+
Sbjct: 1319 DISLSDIYQSDVPFLKKFLLSLGKDLPLVSDIFQKLELLER 1359


>sp|Q8U1N4|Y1172_PYRFU Uncharacterized RNA methyltransferase PF1172
           OS=Pyrococcus furiosus GN=PF1172 PE=3 SV=1
          Length = 411

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
 Frame = -3

Query: 468 SYPAWQMSQKLKKFKEGGKIISFLTYDGTFG-NIDKVLAFIQQFDA-AFGDEGFTKSSKL 295
           SY A  + + ++KF EG K++   +  GTFG  + K    +  FD+ AF  E   K++++
Sbjct: 257 SYQAVNLVKTVEKFVEGEKVVDMYSGVGTFGVYLAKKGMKVVGFDSNAFAIEMANKNAEI 316

Query: 294 HHVAMHF 274
           ++V   F
Sbjct: 317 NNVEAEF 323


>sp|P14547|POL2_BRSV RNA2 polyprotein OS=Beet ringspot virus PE=3 SV=1
          Length = 1357

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -1

Query: 101  ICGQVLGFTSQGYCLSK 51
            ICGQ L F+ QGYC+ K
Sbjct: 954  ICGQTLNFSGQGYCVPK 970


>sp|Q8BFR2|FSTL5_MOUSE Follistatin-related protein 5 OS=Mus musculus
           GN=Fstl5 PE=2 SV=1
          Length = 847

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -3

Query: 498 PAWQRGGHCKSY-PAWQMSQKLKKFKEGGKIISFLTYDGTFGNID 367
           P  + G   KSY P  ++  K +K +E  +I  FL +DG FG+ +
Sbjct: 22  PTKESGYGLKSYQPLTRLRHKQEKSQESSRIKEFLIHDGPFGSCE 66


>sp|Q03603|DGK3_CAEEL Probable diacylglycerol kinase 3
           OS=Caenorhabditis elegans GN=dgk-3 PE=2 SV=2
          Length = 812

 Score = 30.0 bits (66), Expect = 6.4
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -3

Query: 468 SYPAWQMSQKLKKFKEGGKIISFLTYDGTFGNIDKVLAFIQQFDAA 331
           +Y   ++   L  F++ GK  S+L+ DG   NID   AF+  +  A
Sbjct: 16  AYSRRKLKDMLSDFQQDGKFYSYLSVDGQTINIDGFRAFLIDYFGA 61


>sp|Q8CRT8|PCRB_STAES Putative glycerol-1-phosphate
           prenyltransferase OS=Staphylococcus epidermidis (strain
           ATCC 12228) GN=pcrB PE=3 SV=1
          Length = 230

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = -3

Query: 453 QMSQKLKKFKEGGKIISFLTYDGTFGNIDKV--LAFIQQFDAAFGDEGFTKSSKLHHVA 283
           QM+++L +F      I ++ Y GT+G++DKV  +A + Q    F   G T   K + ++
Sbjct: 147 QMAEELYRFP-----IMYVEYSGTYGDVDKVKAIANMLQHTQLFYGGGITNIDKANEMS 200


>sp|Q5HN28|PCRB_STAEQ Putative glycerol-1-phosphate
           prenyltransferase OS=Staphylococcus epidermidis (strain
           ATCC 35984 / RP62A) GN=pcrB PE=3 SV=1
          Length = 230

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = -3

Query: 453 QMSQKLKKFKEGGKIISFLTYDGTFGNIDKV--LAFIQQFDAAFGDEGFTKSSKLHHVA 283
           QM+++L +F      I ++ Y GT+G++DKV  +A + Q    F   G T   K + ++
Sbjct: 147 QMAEELYRFP-----IMYVEYSGTYGDVDKVKAIANMLQHTQLFYGGGITNIDKANEMS 200
tr_hit_id B2GJY2
Definition tr|B2GJY2|B2GJY2_KOCRD Putative uncharacterized protein OS=Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 12708 / DC2201)
Align length 36
Score (bit) 37.0
E-value 0.53
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916892|Adiantum capillus-veneris mRNA, clone:
YMU001_000093_C08.
         (503 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B2GJY2|B2GJY2_KOCRD Putative uncharacterized protein OS=Kocur...    37   0.53 
tr|Q4SCX8|Q4SCX8_TETNG Chromosome 14 SCAF14646, whole genome sho...    33   9.9  
tr|Q7Y1L4|Q7Y1L4_ORYSJ Putative polyprotein OS=Oryza sativa subs...    33   9.9  
tr|Q75GC6|Q75GC6_ORYSJ Putative gag and pol polyprotein OS=Oryza...    33   9.9  
tr|Q5W6K0|Q5W6K0_ORYSJ Retrotransposon protein, putative, Ty3-gy...    33   9.9  
tr|Q10JJ3|Q10JJ3_ORYSJ Retrotransposon protein, putative, Ty1-co...    33   9.9  
tr|A8K7D5|A8K7D5_HUMAN cDNA FLJ77349, highly similar to Homo sap...    33   9.9  

>tr|B2GJY2|B2GJY2_KOCRD Putative uncharacterized protein OS=Kocuria
           rhizophila (strain ATCC 9341 / DSM 348 / NBRC 12708 /
           DC2201) GN=KRH_07400 PE=4 SV=1
          Length = 657

 Score = 37.0 bits (84), Expect = 0.53
 Identities = 14/36 (38%), Positives = 24/36 (66%)
 Frame = -3

Query: 387 GTFGNIDKVLAFIQQFDAAFGDEGFTKSSKLHHVAM 280
           G+F   D++L  +++FDA  GD+G     +LHH+A+
Sbjct: 28  GSFWQADRLLELVREFDATRGDQGINDIVELHHLAL 63


>tr|Q4SCX8|Q4SCX8_TETNG Chromosome 14 SCAF14646, whole genome
           shotgun sequence OS=Tetraodon nigroviridis
           GN=GSTENG00020294001 PE=4 SV=1
          Length = 871

 Score = 32.7 bits (73), Expect = 9.9
 Identities = 23/58 (39%), Positives = 31/58 (53%)
 Frame = +2

Query: 227 APLPRRLAHH*QADFLKCIAT*CSLEDFVKPSSPKAASNCWMKANTLSILPKVPS*VR 400
           AP PRRLA    A  LK  ++  S +  VKP +P A      KA+  + +PK PS V+
Sbjct: 276 APAPRRLAGLNAAALLKLTSSSASSKQRVKP-APTATVTSDCKASAAAAIPKQPSRVK 332


>tr|Q7Y1L4|Q7Y1L4_ORYSJ Putative polyprotein OS=Oryza sativa subsp.
           japonica GN=OSJNBb0056B16.15 PE=4 SV=1
          Length = 1494

 Score = 32.7 bits (73), Expect = 9.9
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -3

Query: 300 KLHHVAMHFKKSACQ*WASLRGNGAAPKTWKTL*VSIIEIFL 175
           ++   +  FK  A   WA L  +G  P TWK L V++ +IF+
Sbjct: 160 RVRQASSEFKDFAIMWWARLADDGILPTTWKELKVAMRDIFV 201


>tr|Q75GC6|Q75GC6_ORYSJ Putative gag and pol polyprotein OS=Oryza
           sativa subsp. japonica GN=OSJNBb0028K20.2 PE=4 SV=1
          Length = 1427

 Score = 32.7 bits (73), Expect = 9.9
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -3

Query: 300 KLHHVAMHFKKSACQ*WASLRGNGAAPKTWKTL*VSIIEIFL 175
           ++   +  FK  A   WA L  +G  P TWK L V++ +IF+
Sbjct: 160 RVRQASSEFKDFAIMWWARLADDGILPTTWKELKVAMRDIFV 201


>tr|Q5W6K0|Q5W6K0_ORYSJ Retrotransposon protein, putative, Ty3-gypsy
           sub-class OS=Oryza sativa subsp. japonica
           GN=OSJNBb0085A04.15 PE=4 SV=1
          Length = 651

 Score = 32.7 bits (73), Expect = 9.9
 Identities = 23/80 (28%), Positives = 36/80 (45%)
 Frame = -3

Query: 414 KIISFLTYDGTFGNIDKVLAFIQQFDAAFGDEGFTKSSKLHHVAMHFKKSACQ*WASLRG 235
           KI SF  Y      +D  +   Q+F+A    E +    ++   +  FK  A   WA L  
Sbjct: 195 KIPSFSGYYDAEKYLDWEMTVEQKFNAHLVPEQY----RVRQASSEFKDFAIMWWARLSD 250

Query: 234 NGAAPKTWKTL*VSIIEIFL 175
            G  P TW+ L V++ + F+
Sbjct: 251 EGVLPTTWEELKVAMHDRFV 270


>tr|Q10JJ3|Q10JJ3_ORYSJ Retrotransposon protein, putative, Ty1-copia
           subclass OS=Oryza sativa subsp. japonica
           GN=LOC_Os03g30450 PE=4 SV=1
          Length = 1543

 Score = 32.7 bits (73), Expect = 9.9
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -3

Query: 300 KLHHVAMHFKKSACQ*WASLRGNGAAPKTWKTL*VSIIEIFL 175
           ++   +  FK  A   WA L  +G  P TWK L V++ +IF+
Sbjct: 183 RVRQASSEFKDFAIMWWARLADDGILPTTWKELKVAMRDIFV 224


>tr|A8K7D5|A8K7D5_HUMAN cDNA FLJ77349, highly similar to Homo
           sapiens rabphilin 3A-like (without C2 domains), mRNA
           OS=Homo sapiens PE=2 SV=1
          Length = 286

 Score = 32.7 bits (73), Expect = 9.9
 Identities = 24/75 (32%), Positives = 36/75 (48%)
 Frame = -1

Query: 233 MVQPQRHGKLYEFPS*RYSLQVMQRTKFLPNGEV*SCSPMSLSTICGQVLGFTSQGYCLS 54
           +++ QR G+L E       L+ M+R   + NG       +S   +CG+VLGF        
Sbjct: 67  VLEQQRIGRLVE------RLETMRRN-VMGNG-------LSQCLLCGEVLGFLGSSSVFC 112

Query: 53  KDRLRRAKATIAWFY 9
           KD  +  K + AWFY
Sbjct: 113 KDCRKVWKRSGAWFY 127