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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916895
Clone id YMU001_000093_C11
Library
Length 258
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000093_C11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AGAGGAGAAAAAATCTCTCCCGGCGCTTCGGCTGTCCAGTAATACTATTGAAGCATGAAC
ATGAGGAGGCATCAGCGTGTTGGTAAGTCAGACTTAAAGGAAACATTATCTGAGGCTGGA
GATGATTGTCTGGATGTAATCTGGGTATATCCTTTGTATGCAGTTGGTCACTTATCCTAC
CAATAAACTGGATTTCGGCATTTAATGTGCCTCTAGTATTTGCAGGAGGCCATGTGACTG
GCACACGATATCCCACTG
■■Homology search results ■■ -
sp_hit_id Q4JK59
Definition sp|Q4JK59|TET2_MOUSE Protein TET2 OS=Mus musculus
Align length 59
Score (bit) 30.0
E-value 3.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916895|Adiantum capillus-veneris mRNA, clone:
YMU001_000093_C11.
         (258 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q4JK59|TET2_MOUSE Protein TET2 OS=Mus musculus GN=Tet2 PE=2 SV=2    30   3.7  
sp|P54394|DING_BACSU Probable ATP-dependent helicase dinG homolo...    30   3.7  
sp|O94378|YG0C_SCHPO Uncharacterized protein C1604.12 OS=Schizos...    29   8.2  
sp|Q7Z1I0|CUPF_DICDI Calcium up-regulated protein F OS=Dictyoste...    29   8.2  

>sp|Q4JK59|TET2_MOUSE Protein TET2 OS=Mus musculus GN=Tet2 PE=2 SV=2
          Length = 1912

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = -3

Query: 187  FIGRISDQLHTKDIPRLHPDNHLQPQIMFPLSLTYQHADASSCSCFNSITGQPKRRERF 11
            F+G  S Q  ++D+ R    +HL  Q + P+   +Q     S S + S   Q  +R+ F
Sbjct: 1572 FLGSYSPQAQSRDLHRYPNQDHLTNQNLPPIHTLHQQTFGDSPSKYLSYGNQNMQRDAF 1630


>sp|P54394|DING_BACSU Probable ATP-dependent helicase dinG homolog
           OS=Bacillus subtilis GN=dinG PE=3 SV=1
          Length = 931

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 19/63 (30%), Positives = 30/63 (47%)
 Frame = -3

Query: 205 LNAEIQFIGRISDQLHTKDIPRLHPDNHLQPQIMFPLSLTYQHADASSCSCFNSITGQPK 26
           L+ ++  IG + +Q   K + +L   N L     F L    QH  A S + F+S+    K
Sbjct: 484 LHTKLSRIGTLKEQGLLKKMRQLFQRNSLPVDSFFELEEWLQHVQAESDAFFSSVHSFVK 543

Query: 25  RRE 17
           RR+
Sbjct: 544 RRK 546


>sp|O94378|YG0C_SCHPO Uncharacterized protein C1604.12
           OS=Schizosaccharomyces pombe GN=SPBC1604.12 PE=1 SV=1
          Length = 860

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -3

Query: 142 RLHPDNHLQPQIMFPLSLTYQHADASSCSCFNSITGQPKRRER 14
           R+HP + L+  +  P S T Q A  S  +  N+    P+RRER
Sbjct: 808 RIHPTHPLRVTVCLPGSKTIQVARRSFRNSMNANRYDPQRRER 850


>sp|Q7Z1I0|CUPF_DICDI Calcium up-regulated protein F
           OS=Dictyostelium discoideum GN=cupF PE=2 SV=2
          Length = 769

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -3

Query: 226 PANTRGTLNAEIQFIGRISDQLHTKDIPRLHPDNHLQPQIMF 101
           PA T G L A  Q+I  I+   HT DI  L+   ++  +I +
Sbjct: 313 PAYTSGDLLASYQYISNIATNGHTDDIRSLYTSINVSLEIFY 354
tr_hit_id A9RGC6
Definition tr|A9RGC6|A9RGC6_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 72
Score (bit) 44.3
E-value 0.003
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916895|Adiantum capillus-veneris mRNA, clone:
YMU001_000093_C11.
         (258 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RGC6|A9RGC6_PHYPA Predicted protein OS=Physcomitrella paten...    44   0.003
tr|A7QUH6|A7QUH6_VITVI Chromosome undetermined scaffold_178, who...    40   0.058
tr|A7PJ62|A7PJ62_VITVI Chromosome chr12 scaffold_18, whole genom...    40   0.058
tr|A5BQT6|A5BQT6_VITVI Putative uncharacterized protein OS=Vitis...    40   0.058
tr|Q2QZQ0|Q2QZQ0_ORYSJ Ribonucleases P/MRP protein subunit POP1 ...    36   0.84 
tr|Q0IR50|Q0IR50_ORYSJ Os11g0677500 protein OS=Oryza sativa subs...    36   0.84 
tr|B8BII2|B8BII2_ORYSI Putative uncharacterized protein OS=Oryza...    36   0.84 
tr|A3CDW7|A3CDW7_ORYSJ Putative uncharacterized protein OS=Oryza...    36   0.84 
tr|Q7UU97|Q7UU97_RHOBA Pyruvate dehydrogenase, E2 component, dih...    35   1.4  
tr|A7SAE7|A7SAE7_NEMVE Predicted protein OS=Nematostella vectens...    34   3.2  
tr|A4C8C6|A4C8C6_9GAMM Cell division protein FtsW OS=Pseudoalter...    33   5.5  
tr|Q4PL84|Q4PL84_ARATH Putative uncharacterized protein OS=Arabi...    33   7.1  
tr|Q4PL83|Q4PL83_ARATH Putative uncharacterized protein OS=Arabi...    33   7.1  

>tr|A9RGC6|A9RGC6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_65760 PE=4 SV=1
          Length = 1055

 Score = 44.3 bits (103), Expect = 0.003
 Identities = 25/72 (34%), Positives = 32/72 (44%)
 Frame = +3

Query: 33  CPVILLKHEHEEASACW*VRLKGNII*GWR*LSGCNLGISFVCSWSLILPINWISAFNVP 212
           C ++++KH H   SAC                            +SLI+PI W+ AF VP
Sbjct: 487 CHILVIKHAHAMPSAC---------------------------GFSLIMPIAWVRAFWVP 519

Query: 213 LVFAGGHVTGTR 248
           LVFAGG   G R
Sbjct: 520 LVFAGGRAIGLR 531


>tr|A7QUH6|A7QUH6_VITVI Chromosome undetermined scaffold_178, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00006851001 PE=4 SV=1
          Length = 634

 Score = 40.0 bits (92), Expect = 0.058
 Identities = 23/72 (31%), Positives = 33/72 (45%)
 Frame = +3

Query: 33  CPVILLKHEHEEASACW*VRLKGNII*GWR*LSGCNLGISFVCSWSLILPINWISAFNVP 212
           CP++LLK+ ++          KG I                   WS+ILP++W+ AF +P
Sbjct: 355 CPILLLKNNNQ----------KGMI------------------GWSIILPLSWVKAFWIP 386

Query: 213 LVFAGGHVTGTR 248
           LV  G H  G R
Sbjct: 387 LVNNGAHAIGLR 398


>tr|A7PJ62|A7PJ62_VITVI Chromosome chr12 scaffold_18, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00018608001
           PE=4 SV=1
          Length = 806

 Score = 40.0 bits (92), Expect = 0.058
 Identities = 15/28 (53%), Positives = 20/28 (71%)
 Frame = +3

Query: 165 WSLILPINWISAFNVPLVFAGGHVTGTR 248
           WS+ILP++W+ AF +PLV  G H  G R
Sbjct: 471 WSIILPLSWVKAFWIPLVSNGAHAIGLR 498


>tr|A5BQT6|A5BQT6_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_012793 PE=4 SV=1
          Length = 743

 Score = 40.0 bits (92), Expect = 0.058
 Identities = 15/28 (53%), Positives = 20/28 (71%)
 Frame = +3

Query: 165 WSLILPINWISAFNVPLVFAGGHVTGTR 248
           WS+ILP++W+ AF +PLV  G H  G R
Sbjct: 459 WSIILPLSWVKAFWIPLVSNGAHAIGLR 486


>tr|Q2QZQ0|Q2QZQ0_ORYSJ Ribonucleases P/MRP protein subunit POP1
           containing protein, expressed OS=Oryza sativa subsp.
           japonica GN=LOC_Os11g45250 PE=4 SV=1
          Length = 856

 Score = 36.2 bits (82), Expect = 0.84
 Identities = 24/72 (33%), Positives = 30/72 (41%)
 Frame = +3

Query: 33  CPVILLKHEHEEASACW*VRLKGNII*GWR*LSGCNLGISFVCSWSLILPINWISAFNVP 212
           CPVILLKH             KG++I                  WS+ILP++W+  F   
Sbjct: 486 CPVILLKHA------------KGSLI---------------SVGWSVILPLSWVKPFWFY 518

Query: 213 LVFAGGHVTGTR 248
           LV  G H  G R
Sbjct: 519 LVSHGAHAIGLR 530


>tr|Q0IR50|Q0IR50_ORYSJ Os11g0677500 protein OS=Oryza sativa subsp.
           japonica GN=Os11g0677500 PE=4 SV=1
          Length = 2381

 Score = 36.2 bits (82), Expect = 0.84
 Identities = 24/72 (33%), Positives = 30/72 (41%)
 Frame = +3

Query: 33  CPVILLKHEHEEASACW*VRLKGNII*GWR*LSGCNLGISFVCSWSLILPINWISAFNVP 212
           CPVILLKH             KG++I                  WS+ILP++W+  F   
Sbjct: 324 CPVILLKHA------------KGSLI---------------SVGWSVILPLSWVKPFWFY 356

Query: 213 LVFAGGHVTGTR 248
           LV  G H  G R
Sbjct: 357 LVSHGAHAIGLR 368


>tr|B8BII2|B8BII2_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_36989 PE=4 SV=1
          Length = 914

 Score = 36.2 bits (82), Expect = 0.84
 Identities = 24/72 (33%), Positives = 30/72 (41%)
 Frame = +3

Query: 33  CPVILLKHEHEEASACW*VRLKGNII*GWR*LSGCNLGISFVCSWSLILPINWISAFNVP 212
           CPVILLKH             KG++I                  WS+ILP++W+  F   
Sbjct: 486 CPVILLKHA------------KGSLI---------------SVGWSVILPLSWVKPFWFY 518

Query: 213 LVFAGGHVTGTR 248
           LV  G H  G R
Sbjct: 519 LVSHGAHAIGLR 530


>tr|A3CDW7|A3CDW7_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_033489 PE=4 SV=1
          Length = 825

 Score = 36.2 bits (82), Expect = 0.84
 Identities = 24/72 (33%), Positives = 30/72 (41%)
 Frame = +3

Query: 33  CPVILLKHEHEEASACW*VRLKGNII*GWR*LSGCNLGISFVCSWSLILPINWISAFNVP 212
           CPVILLKH             KG++I                  WS+ILP++W+  F   
Sbjct: 368 CPVILLKHA------------KGSLI---------------SVGWSVILPLSWVKPFWFY 400

Query: 213 LVFAGGHVTGTR 248
           LV  G H  G R
Sbjct: 401 LVSHGAHAIGLR 412


>tr|Q7UU97|Q7UU97_RHOBA Pyruvate dehydrogenase, E2 component,
           dihydrolipoamide acetyltransferase OS=Rhodopirellula
           baltica GN=aceF PE=3 SV=1
          Length = 469

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
 Frame = -3

Query: 157 TKDIPRLHPDNHLQPQIMFPLSLTYQH--ADASSCSCF-NSITGQPKRRERFFL 5
           ++ +P + PD+ +QP++M PLSL+Y H   D  + + F N + G  +   R  L
Sbjct: 414 SRKLPVVMPDDSIQPRLMMPLSLSYDHRLVDGGTAARFLNDVIGYLQAPSRLLL 467


>tr|A7SAE7|A7SAE7_NEMVE Predicted protein OS=Nematostella vectensis
           GN=v1g168328 PE=4 SV=1
          Length = 824

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +3

Query: 144 GISFVCSWSLILPINWISAFNVPLVFAGGHVTGTR 248
           G  +   W LILP  W  AF + LV+ G  V G R
Sbjct: 483 GTGYGSGWDLILPSGWAMAFWIALVYRGARVGGLR 517