BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916903|Adiantum capillus-veneris mRNA, clone:
YMU001_000093_D07.
         (509 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O60732|MAGC1_HUMAN Melanoma-associated antigen C1 OS=Homo sap...    33   0.78 
sp|P36594|RPB1_SCHPO DNA-directed RNA polymerase II subunit rpb1...    33   1.0  
sp|A1ALT4|RPOB_PELPD DNA-directed RNA polymerase subunit beta OS...    31   3.9  
sp|P06731|CEAM5_HUMAN Carcinoembryonic antigen-related cell adhe...    31   3.9  

>sp|O60732|MAGC1_HUMAN Melanoma-associated antigen C1 OS=Homo
           sapiens GN=MAGEC1 PE=1 SV=3
          Length = 1142

 Score = 33.1 bits (74), Expect = 0.78
 Identities = 22/57 (38%), Positives = 31/57 (54%)
 Frame = -3

Query: 408 SDSETVDTDQNS*LSLQNPREGSRV*V*GPTSPLESNTNRSLSRSVVSMTSASPNRT 238
           S S  V   Q+S  S Q+P EG       P SPL+   +RS S +++S+  +SP RT
Sbjct: 171 SSSTLVSIFQSSPESTQSPFEGF------PQSPLQIPVSRSFSSTLLSIFQSSPERT 221


>sp|P36594|RPB1_SCHPO DNA-directed RNA polymerase II subunit rpb1
            OS=Schizosaccharomyces pombe GN=rpb1 PE=1 SV=1
          Length = 1752

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 29/94 (30%), Positives = 41/94 (43%)
 Frame = -3

Query: 501  ILDCPSLYKGFQHDDWDRFISSARREGHYMTSDSETVDTDQNS*LSLQNPREGSRV*V*G 322
            +L   S YKG Q   +    SSA   G+ +TS S +  +   S      P   S      
Sbjct: 1524 LLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSY----S 1579

Query: 321  PTSPLESNTNRSLSRSVVSMTSASPNRTAQNEWY 220
            PTSP  S T+ S S +  S +  SP+ +A +  Y
Sbjct: 1580 PTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSY 1613


>sp|A1ALT4|RPOB_PELPD DNA-directed RNA polymerase subunit beta
           OS=Pelobacter propionicus (strain DSM 2379) GN=rpoB PE=3
           SV=1
          Length = 1499

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = -3

Query: 195 LWNLPT*FVRSSRQHSPTQEVARNLAKSLVCQLHN 91
           L  LP  FV+  R+H P+Q VA  L + L+ +L+N
Sbjct: 461 LARLPEDFVKVLRKHEPSQPVAEKLREQLLKELNN 495


>sp|P06731|CEAM5_HUMAN Carcinoembryonic antigen-related cell
           adhesion molecule 5 OS=Homo sapiens GN=CEACAM5 PE=1 SV=2
          Length = 702

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
 Frame = -3

Query: 324 GPTSPLES--NTNRSLSRSVVSMTSASPNRTAQNEWYCAGVWHPKLWNLPT*FVRSSRQH 151
           GP +P  S  NT+     ++     A+ N  AQ  W+  G +            + S Q 
Sbjct: 236 GPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTF------------QQSTQE 283

Query: 150 SPTQEVARNLAKSLVCQLHNQDSGHSVTT 64
                +  N + S  CQ HN D+G + TT
Sbjct: 284 LFIPNITVNNSGSYTCQAHNSDTGLNRTT 312

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916903|Adiantum capillus-veneris mRNA, clone:
YMU001_000093_D07.
         (509 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******