BP916906 |
Clone id |
YMU001_000093_D10 |
Library |
YMU01 |
Length |
552 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000093_D10. |
Accession |
BP916906 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL4146Contig1 |
Sequence |
TTGATTCACAACCATTGTTCCGTCAAAATGCTTAAAAGAACACTCACACTCTCAATCACA GCCATTCCAATTGCCCGCATTGTGCCGTAGCACATAAACAATGTGAAATAAAAATACTCA CCTCACTTTTTATATTTTTTGATGCATATCTACACAACACTTTCAGGCCCCTCCCAACAA TATTTCCAAGTACCAATATGCACATCAAGTTCAGACAGGCTGGCATCATTTAGCATACTA CATCACTGTCTTTTTCTTGTGACCAGCAATCGCAACTACCCCGCCAGTTACCAGAGGATC CAAACCGGGGATAACCCATGTCAAGCAGAAACCCTTGAGAATTCCATGACAGTTACTTCC ATCCCTTAGCTTCAGGGACGTGAGTGCAGATTGCCTCATCCACTTCTCAAACTCCTCTGT TCCCATGCTGAACTTTGCATTTTGCTATGTGCCATTGCATAAAATCTCATGTTCCTTCAG ATGTCTTTGGAACCTTGCAAGTCGAGCTTGTAAATTACAATGCCAGCAGCTTTCTTTGAG AGAACATAACTC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q8CY42 |
Definition |
sp|Q8CY42|RSH_BRUSU GTP pyrophosphokinase rsh OS=Brucella suis |
Align length |
71 |
Score (bit) |
35.8 |
E-value |
0.14 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP916906|Adiantum capillus-veneris mRNA, clone: YMU001_000093_D10. (552 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q8CY42|RSH_BRUSU GTP pyrophosphokinase rsh OS=Brucella suis G... 36 0.14 sp|A5VPI9|RSH_BRUO2 GTP pyrophosphokinase rsh OS=Brucella ovis (... 36 0.14 sp|Q8YG65|RSH_BRUME GTP pyrophosphokinase rsh OS=Brucella melite... 36 0.14 sp|Q57E90|RSH_BRUAB GTP pyrophosphokinase rsh OS=Brucella abortu... 36 0.14 sp|Q2YN11|RSH_BRUA2 GTP pyrophosphokinase rsh OS=Brucella abortu... 36 0.14 sp|O19133|G6PC_CANFA Glucose-6-phosphatase OS=Canis familiaris G... 31 4.6 sp|Q29RU6|G6PC_BOVIN Glucose-6-phosphatase OS=Bos taurus GN=G6PC... 31 4.6 sp|Q5DTI6|CB067_MOUSE Uncharacterized protein C2orf67 homolog OS... 30 6.0 sp|P03380|ENV_BLVJ Envelope glycoprotein OS=Bovine leukemia viru... 30 7.9 sp|P25507|ENV_BLVB5 Envelope glycoprotein OS=Bovine leukemia vir... 30 7.9 sp|P25506|ENV_BLVB2 Envelope glycoprotein OS=Bovine leukemia vir... 30 7.9 sp|P25505|ENV_BLVAV Envelope glycoprotein OS=Bovine leukemia vir... 30 7.9 sp|P25057|ENV_BLVAU Envelope glycoprotein OS=Bovine leukemia vir... 30 7.9 sp|P25504|ENV_BLVAF Envelope glycoprotein OS=Bovine leukemia vir... 30 7.9 sp|P51519|ENV_BLV Envelope glycoprotein OS=Bovine leukemia virus... 30 7.9
>sp|Q8CY42|RSH_BRUSU GTP pyrophosphokinase rsh OS=Brucella suis GN=rsh PE=1 SV=1 Length = 750
Score = 35.8 bits (81), Expect = 0.14 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 14/71 (19%) Frame = +1
Query: 148 IYTTLSGPSQQYFQVPICTSSSDRLASFSILHHCLFLVTSNRNYP--------------A 285 I+TT+ GPS+Q ++ I T D +A F + H ++ + N P Sbjct: 306 IHTTIIGPSRQRIELQIRTREMDEIAEFGVAAHSIYKDRGSANNPHKISTETNAYAWLRQ 365
Query: 286 SYQRIQTGDNP 318 + +++ GDNP Sbjct: 366 TIEQLSEGDNP 376
>sp|A5VPI9|RSH_BRUO2 GTP pyrophosphokinase rsh OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=rsh PE=3 SV=1 Length = 750
Score = 35.8 bits (81), Expect = 0.14 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 14/71 (19%) Frame = +1
Query: 148 IYTTLSGPSQQYFQVPICTSSSDRLASFSILHHCLFLVTSNRNYP--------------A 285 I+TT+ GPS+Q ++ I T D +A F + H ++ + N P Sbjct: 306 IHTTIIGPSRQRIELQIRTREMDEIAEFGVAAHSIYKDRGSANNPHKISTETNAYAWLRQ 365
Query: 286 SYQRIQTGDNP 318 + +++ GDNP Sbjct: 366 TIEQLSEGDNP 376
>sp|Q8YG65|RSH_BRUME GTP pyrophosphokinase rsh OS=Brucella melitensis GN=rsh PE=1 SV=2 Length = 750
Score = 35.8 bits (81), Expect = 0.14 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 14/71 (19%) Frame = +1
Query: 148 IYTTLSGPSQQYFQVPICTSSSDRLASFSILHHCLFLVTSNRNYP--------------A 285 I+TT+ GPS+Q ++ I T D +A F + H ++ + N P Sbjct: 306 IHTTIIGPSRQRIELQIRTREMDEIAEFGVAAHSIYKDRGSANNPHKISTETNAYAWLRQ 365
Query: 286 SYQRIQTGDNP 318 + +++ GDNP Sbjct: 366 TIEQLSEGDNP 376
>sp|Q57E90|RSH_BRUAB GTP pyrophosphokinase rsh OS=Brucella abortus GN=rsh PE=1 SV=1 Length = 750
Score = 35.8 bits (81), Expect = 0.14 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 14/71 (19%) Frame = +1
Query: 148 IYTTLSGPSQQYFQVPICTSSSDRLASFSILHHCLFLVTSNRNYP--------------A 285 I+TT+ GPS+Q ++ I T D +A F + H ++ + N P Sbjct: 306 IHTTIIGPSRQRIELQIRTREMDEIAEFGVAAHSIYKDRGSANNPHKISTETNAYAWLRQ 365
Query: 286 SYQRIQTGDNP 318 + +++ GDNP Sbjct: 366 TIEQLSEGDNP 376
>sp|Q2YN11|RSH_BRUA2 GTP pyrophosphokinase rsh OS=Brucella abortus (strain 2308) GN=rsh PE=3 SV=1 Length = 750
Score = 35.8 bits (81), Expect = 0.14 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 14/71 (19%) Frame = +1
Query: 148 IYTTLSGPSQQYFQVPICTSSSDRLASFSILHHCLFLVTSNRNYP--------------A 285 I+TT+ GPS+Q ++ I T D +A F + H ++ + N P Sbjct: 306 IHTTIIGPSRQRIELQIRTREMDEIAEFGVAAHSIYKDRGSANNPHKISTETNAYAWLRQ 365
Query: 286 SYQRIQTGDNP 318 + +++ GDNP Sbjct: 366 TIEQLSEGDNP 376
>sp|O19133|G6PC_CANFA Glucose-6-phosphatase OS=Canis familiaris GN=G6PC PE=1 SV=1 Length = 357
Score = 30.8 bits (68), Expect = 4.6 Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 3/41 (7%) Frame = +1
Query: 139 LMHIYTTLSGPSQQ---YFQVPICTSSSDRLASFSILHHCL 252 L+H++ +L PSQ ++ + C S++ LAS S++ +CL Sbjct: 305 LLHLFDSLKPPSQTELIFYTLSFCKSAAVPLASVSLIPYCL 345
>sp|Q29RU6|G6PC_BOVIN Glucose-6-phosphatase OS=Bos taurus GN=G6PC PE=2 SV=1 Length = 357
Score = 30.8 bits (68), Expect = 4.6 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 3/49 (6%) Frame = +1
Query: 139 LMHIYTTLSGPSQQ---YFQVPICTSSSDRLASFSILHHCLFLVTSNRN 276 L+H++ +L PSQ ++ + C S++ LAS S++ +CL V N Sbjct: 305 LLHLFDSLKPPSQIELIFYVLSFCKSAAVPLASVSLIPYCLAWVLGQPN 353
>sp|Q5DTI6|CB067_MOUSE Uncharacterized protein C2orf67 homolog OS=Mus musculus GN=Kiaa4189 PE=2 SV=2 Length = 991
Score = 30.4 bits (67), Expect = 6.0 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Frame = +2
Query: 359 PSLSFRDVSADC--LIHFSNSSVPMLNFAFCYVPLHKISCSFRCLWNLASRACKLQCQQL 532 P+L R++ L NS + LN + PL SCS +CL N SR+ +L Sbjct: 467 PTLLLRNIEKQSAQLTEIINSLIAPLNLSPTSSPLSSKSCSHKCLANGISRSASENLDEL 526
Query: 533 S 535 S Sbjct: 527 S 527
>sp|P03380|ENV_BLVJ Envelope glycoprotein OS=Bovine leukemia virus (isolate Japanese BLV-1) GN=env PE=1 SV=1 Length = 515
Score = 30.0 bits (66), Expect = 7.9 Identities = 14/22 (63%), Positives = 15/22 (68%) Frame = -1
Query: 351 CHGILKGFCLTWVIPGLDPLVT 286 CHGI F LTW I G DPL+T Sbjct: 152 CHGI---FTLTWEIWGYDPLIT 170
>sp|P25507|ENV_BLVB5 Envelope glycoprotein OS=Bovine leukemia virus (isolate Belgium LB59) GN=env PE=3 SV=1 Length = 515
Score = 30.0 bits (66), Expect = 7.9 Identities = 14/22 (63%), Positives = 15/22 (68%) Frame = -1
Query: 351 CHGILKGFCLTWVIPGLDPLVT 286 CHGI F LTW I G DPL+T Sbjct: 152 CHGI---FTLTWEIWGYDPLIT 170
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9TQY4 |
Definition |
tr|A9TQY4|A9TQY4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
19 |
Score (bit) |
38.5 |
E-value |
0.009 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP916906|Adiantum capillus-veneris mRNA, clone: YMU001_000093_D10. (552 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9TQY4|A9TQY4_PHYPA Predicted protein OS=Physcomitrella paten... 39 0.009 tr|A9RQ10|A9RQ10_PHYPA Predicted protein (Fragment) OS=Physcomit... 38 0.015 tr|A9SHB1|A9SHB1_PHYPA Predicted protein OS=Physcomitrella paten... 39 0.020 tr|B2SAD0|B2SAD0_BRUA1 RelA/SpoT family protein OS=Brucella abor... 36 1.6 tr|B0CKX8|B0CKX8_BRUSI RelA/SpoT family protein OS=Brucella suis... 36 1.6 tr|A9MA27|A9MA27_BRUC2 RelA/SpoT family protein OS=Brucella cani... 36 1.6 tr|A6X295|A6X295_OCHA4 (P)ppGpp synthetase I, SpoT/RelA OS=Ochro... 36 1.6 tr|A5BHF6|A5BHF6_VITVI Putative uncharacterized protein OS=Vitis... 32 1.9 tr|Q9LUS1|Q9LUS1_ARATH Similarity to kinesin protein OS=Arabidop... 32 1.9 tr|Q940B8|Q940B8_ARATH Putative kinesin protein OS=Arabidopsis t... 32 1.9 tr|Q56WU1|Q56WU1_ARATH Kinesin-like protein (Fragment) OS=Arabid... 32 2.0 tr|A7NW25|A7NW25_VITVI Chromosome chr5 scaffold_2, whole genome ... 32 2.3 tr|Q3E6Z7|Q3E6Z7_ARATH Uncharacterized protein At4g15885.1 OS=Ar... 32 2.3 tr|Q11JT2|Q11JT2_MESSB (P)ppGpp synthetase I, SpoT/RelA OS=Mesor... 35 2.7 tr|A3B041|A3B041_ORYSJ Putative uncharacterized protein OS=Oryza... 32 3.1 tr|B8AY67|B8AY67_ORYSI Putative uncharacterized protein OS=Oryza... 32 4.1 tr|B6SXM5|B6SXM5_MAIZE ATP binding protein OS=Zea mays PE=2 SV=1 32 4.1 tr|Q0DKM5|Q0DKM5_ORYSJ Os05g0154700 protein (Fragment) OS=Oryza ... 32 4.2 tr|Q60F22|Q60F22_ORYSJ Putative kinesin OS=Oryza sativa subsp. j... 32 4.4 tr|A0NMC4|A0NMC4_9RHOB GTP pyrophosphokinase OS=Labrenzia aggreg... 34 4.6
>tr|A9TQY4|A9TQY4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_149258 PE=3 SV=1 Length = 813
Score = 38.5 bits (88), Expect(2) = 0.009 Identities = 18/19 (94%), Positives = 18/19 (94%) Frame = -1
Query: 516 NLQARLARFQRHLKEHEIL 460 NLQARLARFQRHLKE EIL Sbjct: 786 NLQARLARFQRHLKEQEIL 804
Score = 23.5 bits (49), Expect(2) = 0.009 Identities = 10/12 (83%), Positives = 12/12 (100%) Frame = -2
Query: 551 SYVLSKKAAGIV 516 +YVLS+KAAGIV Sbjct: 774 NYVLSRKAAGIV 785
>tr|A9RQ10|A9RQ10_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_21928 PE=3 SV=1 Length = 761
Score = 37.7 bits (86), Expect(2) = 0.015 Identities = 17/19 (89%), Positives = 18/19 (94%) Frame = -1
Query: 516 NLQARLARFQRHLKEHEIL 460 NLQARLARFQRH+KE EIL Sbjct: 741 NLQARLARFQRHMKEQEIL 759
Score = 23.5 bits (49), Expect(2) = 0.015 Identities = 10/12 (83%), Positives = 12/12 (100%) Frame = -2
Query: 551 SYVLSKKAAGIV 516 +YVLS+KAAGIV Sbjct: 729 NYVLSRKAAGIV 740
>tr|A9SHB1|A9SHB1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_129925 PE=3 SV=1 Length = 786
Score = 38.5 bits (88), Expect(2) = 0.020 Identities = 18/19 (94%), Positives = 18/19 (94%) Frame = -1
Query: 516 NLQARLARFQRHLKEHEIL 460 NLQARLARFQRHLKE EIL Sbjct: 759 NLQARLARFQRHLKEQEIL 777
Score = 22.3 bits (46), Expect(2) = 0.020 Identities = 9/12 (75%), Positives = 12/12 (100%) Frame = -2
Query: 551 SYVLSKKAAGIV 516 +YVLS+KA+GIV Sbjct: 747 NYVLSRKASGIV 758
>tr|B2SAD0|B2SAD0_BRUA1 RelA/SpoT family protein OS=Brucella abortus (strain S19) GN=BAbS19_I06290 PE=4 SV=1 Length = 720
Score = 35.8 bits (81), Expect = 1.6 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 14/71 (19%) Frame = +1
Query: 148 IYTTLSGPSQQYFQVPICTSSSDRLASFSILHHCLFLVTSNRNYP--------------A 285 I+TT+ GPS+Q ++ I T D +A F + H ++ + N P Sbjct: 276 IHTTIIGPSRQRIELQIRTREMDEIAEFGVAAHSIYKDRGSANNPHKISTETNAYAWLRQ 335
Query: 286 SYQRIQTGDNP 318 + +++ GDNP Sbjct: 336 TIEQLSEGDNP 346
>tr|B0CKX8|B0CKX8_BRUSI RelA/SpoT family protein OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=BSUIS_A0680 PE=4 SV=1 Length = 750
Score = 35.8 bits (81), Expect = 1.6 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 14/71 (19%) Frame = +1
Query: 148 IYTTLSGPSQQYFQVPICTSSSDRLASFSILHHCLFLVTSNRNYP--------------A 285 I+TT+ GPS+Q ++ I T D +A F + H ++ + N P Sbjct: 306 IHTTIIGPSRQRIELQIRTREMDEIAEFGVAAHSIYKDRGSANNPHKISTETNAYAWLRQ 365
Query: 286 SYQRIQTGDNP 318 + +++ GDNP Sbjct: 366 TIEQLSEGDNP 376
>tr|A9MA27|A9MA27_BRUC2 RelA/SpoT family protein OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=BCAN_A0665 PE=4 SV=1 Length = 750
Score = 35.8 bits (81), Expect = 1.6 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 14/71 (19%) Frame = +1
Query: 148 IYTTLSGPSQQYFQVPICTSSSDRLASFSILHHCLFLVTSNRNYP--------------A 285 I+TT+ GPS+Q ++ I T D +A F + H ++ + N P Sbjct: 306 IHTTIIGPSRQRIELQIRTREMDEIAEFGVAAHSIYKDRGSANNPHKISTETNAYAWLRQ 365
Query: 286 SYQRIQTGDNP 318 + +++ GDNP Sbjct: 366 TIEQLSEGDNP 376
>tr|A6X295|A6X295_OCHA4 (P)ppGpp synthetase I, SpoT/RelA OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=Oant_2636 PE=3 SV=1 Length = 748
Score = 35.8 bits (81), Expect = 1.6 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 14/71 (19%) Frame = +1
Query: 148 IYTTLSGPSQQYFQVPICTSSSDRLASFSILHHCLFLVTSNRNYP--------------A 285 I+TT+ GPS+Q ++ I T D +A F + H ++ + N P Sbjct: 306 IHTTIIGPSRQRIELQIRTREMDEIAEFGVAAHSIYKDRGSANNPHKMSTETNAYAWLRQ 365
Query: 286 SYQRIQTGDNP 318 + +++ GDNP Sbjct: 366 TIEQLSEGDNP 376
>tr|A5BHF6|A5BHF6_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000297 PE=3 SV=1 Length = 989
Score = 31.6 bits (70), Expect(2) = 1.9 Identities = 15/19 (78%), Positives = 16/19 (84%) Frame = -1
Query: 516 NLQARLARFQRHLKEHEIL 460 +LQARLARFQ LKE EIL Sbjct: 964 SLQARLARFQHRLKEQEIL 982
Score = 22.3 bits (46), Expect(2) = 1.9 Identities = 9/12 (75%), Positives = 12/12 (100%) Frame = -2
Query: 551 SYVLSKKAAGIV 516 S+VLS+KAAG+V Sbjct: 952 SFVLSRKAAGLV 963
>tr|Q9LUS1|Q9LUS1_ARATH Similarity to kinesin protein OS=Arabidopsis thaliana PE=3 SV=1 Length = 799
Score = 31.6 bits (70), Expect(2) = 1.9 Identities = 15/19 (78%), Positives = 16/19 (84%) Frame = -1
Query: 516 NLQARLARFQRHLKEHEIL 460 +LQARLARFQ LKE EIL Sbjct: 774 SLQARLARFQHRLKEQEIL 792
Score = 22.3 bits (46), Expect(2) = 1.9 Identities = 9/12 (75%), Positives = 12/12 (100%) Frame = -2
Query: 551 SYVLSKKAAGIV 516 S+VLS+KAAG+V Sbjct: 762 SFVLSRKAAGLV 773
>tr|Q940B8|Q940B8_ARATH Putative kinesin protein OS=Arabidopsis thaliana GN=At3g16630 PE=2 SV=1 Length = 794
Score = 31.6 bits (70), Expect(2) = 1.9 Identities = 15/19 (78%), Positives = 16/19 (84%) Frame = -1
Query: 516 NLQARLARFQRHLKEHEIL 460 +LQARLARFQ LKE EIL Sbjct: 769 SLQARLARFQHRLKEQEIL 787
Score = 22.3 bits (46), Expect(2) = 1.9 Identities = 9/12 (75%), Positives = 12/12 (100%) Frame = -2
Query: 551 SYVLSKKAAGIV 516 S+VLS+KAAG+V Sbjct: 757 SFVLSRKAAGLV 768
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