NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916911
Clone id YMU001_000093_E04
Library
Length 532
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000093_E04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TAGTTCACAAGTGTTGCTTCAATGCATCTTATACAACCGATGCTTCACACAAATGTCGTT
AGCAAACACTCGAAGATAGGGTAGCAATACAAGAAAATACACCAACACTGGGCTCATGGG
CTCCATAGAAGACTCGGCGCTGCAGCACAGCCACGAGCTCCTCTTTACAAGATATTACTC
CTTGCCTTCAAAAACAACGATGCTTTATGAGCTGAAAGCACCAATCAGAAGCCTTGTGAT
AGAGCTATACGTTTCGTGAGATAAGATTATGGATACAAATTAATAAATAAGAATTTCCTC
TGTATTCCAGAAAGACTCCTCAGATTGTAGCCCCCTCAACATGGCAGGCATACCAAAAAC
TACCCAGTATATGTGCCGTCGAAAAATTGGAATCCAGAACCACCTACCAGTAAAATGTGG
GGATCCATACACACTTTCCCCCACATCTATATGACATGTAATACTCAGATTATTTGTTAG
GCTTGACATATGAGTATTGCTAAAGTTTCCTATCAGCAGTTCTCGTCGCACG
■■Homology search results ■■ -
sp_hit_id Q02796
Definition sp|Q02796|LGE1_YEAST Transcriptional regulatory protein LGE1 OS=Saccharomyces cerevisiae
Align length 47
Score (bit) 29.6
E-value 9.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916911|Adiantum capillus-veneris mRNA, clone:
YMU001_000093_E04.
         (532 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q02796|LGE1_YEAST Transcriptional regulatory protein LGE1 OS=...    30   9.5  

>sp|Q02796|LGE1_YEAST Transcriptional regulatory protein LGE1
           OS=Saccharomyces cerevisiae GN=LGE1 PE=1 SV=1
          Length = 332

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
 Frame = +1

Query: 331 PPQHGRHTKNYPVYVPSKNWNPEPPTS-----KMWGSIHTFPHIYMT 456
           PP +G + K YPV+VP    N +  +S     K    +   P IY+T
Sbjct: 211 PPSNGYYAKGYPVHVPENRSNSDGSSSSVVKKKRILDMKDSPFIYLT 257
tr_hit_id Q46K75
Definition tr|Q46K75|Q46K75_PROMT Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine OS=Prochlorococcus marinus (strain NATL2A)
Align length 59
Score (bit) 34.3
E-value 4.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916911|Adiantum capillus-veneris mRNA, clone:
YMU001_000093_E04.
         (532 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q46K75|Q46K75_PROMT Amino acid ABC transporter, permease prot...    34   4.1  
tr|A2C3C3|A2C3C3_PROM1 Amino acid ABC transporter, permease prot...    34   4.1  
tr|Q7PS94|Q7PS94_ANOGA AGAP003827-PA (Fragment) OS=Anopheles gam...    34   5.4  
tr|Q7VCR6|Q7VCR6_PROMA ABC-type amino acid transport system perm...    33   9.2  

>tr|Q46K75|Q46K75_PROMT Amino acid ABC transporter, permease
           protein, 3-TM region, His/Glu/Gln/Arg/opine
           OS=Prochlorococcus marinus (strain NATL2A) GN=PMN2A_0612
           PE=3 SV=1
          Length = 344

 Score = 34.3 bits (77), Expect = 4.1
 Identities = 15/59 (25%), Positives = 33/59 (55%)
 Frame = -2

Query: 513 IGNFSNTHMSSLTNNLSITCHIDVGESVYGSPHFTGRWFWIPIFRRHIYWVVFGMPAML 337
           IG F NT + ++   + +   + +G S+  +P F G++  + ++   +YW+V  + A+L
Sbjct: 274 IGLFQNTSLMAILGLVEL---LGIGRSILANPEFIGQYIEVYVWLACVYWIVCTIMAVL 329


>tr|A2C3C3|A2C3C3_PROM1 Amino acid ABC transporter, permease
           protein, 3-TM region, His/Glu/Gln/Arg/opine
           OS=Prochlorococcus marinus (strain NATL1A)
           GN=NATL1_14251 PE=3 SV=1
          Length = 344

 Score = 34.3 bits (77), Expect = 4.1
 Identities = 15/59 (25%), Positives = 33/59 (55%)
 Frame = -2

Query: 513 IGNFSNTHMSSLTNNLSITCHIDVGESVYGSPHFTGRWFWIPIFRRHIYWVVFGMPAML 337
           IG F NT + ++   + +   + +G S+  +P F G++  + ++   +YW+V  + A+L
Sbjct: 274 IGLFQNTSLMAILGLVEL---LGIGRSILANPEFIGQYIEVYVWLACVYWIVCTIMAVL 329


>tr|Q7PS94|Q7PS94_ANOGA AGAP003827-PA (Fragment) OS=Anopheles gambiae
            GN=AGAP003827 PE=4 SV=4
          Length = 1738

 Score = 33.9 bits (76), Expect = 5.4
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +1

Query: 91   KKIHQHWAHGLHRRLGAAAQPRAP 162
            K+ H HW+H LH    AAAQP +P
Sbjct: 1039 KQHHNHWSHMLHHTAAAAAQPPSP 1062


>tr|Q7VCR6|Q7VCR6_PROMA ABC-type amino acid transport system
           permease component OS=Prochlorococcus marinus
           GN=Pro_0674 PE=3 SV=1
          Length = 339

 Score = 33.1 bits (74), Expect = 9.2
 Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
 Frame = -2

Query: 513 IGNFSNTHMSSLTNNLSITCHIDVGESVYGSPHFTGRWFWIPIFRRHIYWVVFGMPAML- 337
           IG   NT + ++   + +   + +G S+  +P F GR+  + ++   IYW+V  + A+L 
Sbjct: 269 IGLLQNTSLMAILGLVEL---LGIGRSLLANPEFIGRYIEVYVWLAAIYWLVCMIMALLA 325

Query: 336 RGLQSEES 313
           R L+ + S
Sbjct: 326 RNLEQKLS 333