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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916915
Clone id YMU001_000093_E08
Library
Length 251
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000093_E08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GATCGTGGATTACAATACTTGTTACAGCAGATATTGCCTTGGTTGAACTCAGTTTATACA
AGGGGACTGCAAGAGATCAAGCCTTGGCCACTGCTCAAGTTATTGGAGTCTGGGTTGCAT
ATAAAGTCAACTCCATTCAGGAGTCATATATAATGGCGTCATTGAAATCTTTAGTGGTGA
AAGATGATCGGGAAGGAACAGAGCCTGCTCTACAACATATGATAGGGAAAGCTGATGAAA
ATGATTACCAC
■■Homology search results ■■ -
sp_hit_id Q9XP78
Definition sp|Q9XP78|CYB_SMILO Cytochrome b OS=Sminthopsis longicaudata
Align length 37
Score (bit) 30.8
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916915|Adiantum capillus-veneris mRNA, clone:
YMU001_000093_E08.
         (251 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9XP78|CYB_SMILO Cytochrome b OS=Sminthopsis longicaudata GN=...    31   2.2  
sp|A6LAP3|SYP_PARD8 Prolyl-tRNA synthetase OS=Parabacteroides di...    30   4.9  
sp|Q82ND8|Y1365_STRAW UPF0678 fatty acid-binding protein-like pr...    29   6.3  
sp|Q02482|Y3689_SHEFN Putative sensor protein Sfri_3689 OS=Shewa...    29   8.3  

>sp|Q9XP78|CYB_SMILO Cytochrome b OS=Sminthopsis longicaudata
           GN=MT-CYB PE=3 SV=1
          Length = 381

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -3

Query: 231 LSLSYVVEQALFLPDHLSPLKISMTPLYMTPEWS*LY 121
           LSL+Y +   L  PD+ SP     TP ++ PEW  L+
Sbjct: 240 LSLAYSLSDLLGDPDNFSPANPLSTPPHIKPEWYFLF 276


>sp|A6LAP3|SYP_PARD8 Prolyl-tRNA synthetase OS=Parabacteroides
           distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152)
           GN=proS PE=3 SV=1
          Length = 493

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -3

Query: 231 LSLSYVVEQALFLPDHLSPLKISMTPLYMTPE 136
           L +S+  +  L LP HL+P+++ + P+Y + E
Sbjct: 284 LIMSHSDDNGLVLPPHLAPIQVVIVPIYRSAE 315


>sp|Q82ND8|Y1365_STRAW UPF0678 fatty acid-binding protein-like
           protein SAV_1365 OS=Streptomyces avermitilis GN=SAV_1365
           PE=3 SV=1
          Length = 180

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 17/70 (24%), Positives = 30/70 (42%)
 Frame = +3

Query: 9   ITILVTADIALVELSLYKGTARDQALATAQVIGVWVAYKVNSIQESYIMASLKSLVVKDD 188
           +  L+T    + E+ + + T     L+T +V     A KVN+ +  Y +    +L    D
Sbjct: 101 VEALITQPTGIAEIMVGRATGNTIDLSTHEVALAPTAKKVNATRRRYTLTDDDTLTFHHD 160

Query: 189 REGTEPALQH 218
            E     +QH
Sbjct: 161 LEAVGQPMQH 170


>sp|Q02482|Y3689_SHEFN Putative sensor protein Sfri_3689
           OS=Shewanella frigidimarina (strain NCIMB 400)
           GN=Sfri_3689 PE=3 SV=2
          Length = 655

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 17/73 (23%), Positives = 30/73 (41%)
 Frame = +3

Query: 6   WITILVTADIALVELSLYKGTARDQALATAQVIGVWVAYKVNSIQESYIMASLKSLVVKD 185
           W+   +  DIA+ EL    G+  + A   ++++     Y +  I + Y + SL  +V   
Sbjct: 459 WLIAGLNPDIAIEELQYSCGSIEEGAKRISRIVNDLKRYAMPHIADQYTLVSLNDVVQVA 518

Query: 186 DREGTEPALQHMI 224
            R        H I
Sbjct: 519 QRLTANQTKSHQI 531
tr_hit_id A9RMV8
Definition tr|A9RMV8|A9RMV8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 78
Score (bit) 90.9
E-value 3.0e-17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916915|Adiantum capillus-veneris mRNA, clone:
YMU001_000093_E08.
         (251 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RMV8|A9RMV8_PHYPA Predicted protein OS=Physcomitrella paten...    91   3e-17
tr|A9TGH0|A9TGH0_PHYPA Predicted protein OS=Physcomitrella paten...    87   4e-16
tr|B8BIA4|B8BIA4_ORYSI Putative uncharacterized protein OS=Oryza...    75   1e-12
tr|A3C7E5|A3C7E5_ORYSJ Putative uncharacterized protein OS=Oryza...    75   1e-12
tr|O23558|O23558_ARATH Putative uncharacterized protein dl4600c ...    73   6e-12
tr|A7PCH0|A7PCH0_VITVI Chromosome chr2 scaffold_11, whole genome...    73   8e-12
tr|A9TTH3|A9TTH3_PHYPA Predicted protein OS=Physcomitrella paten...    44   0.004
tr|Q6K796|Q6K796_ORYSJ Vacuolar protein sorting 13C protein-like...    39   0.10 
tr|Q0E193|Q0E193_ORYSJ Os02g0470400 protein OS=Oryza sativa subs...    39   0.10 
tr|B8AHJ5|B8AHJ5_ORYSI Putative uncharacterized protein OS=Oryza...    39   0.10 
tr|A9V2U1|A9V2U1_MONBE Predicted protein OS=Monosiga brevicollis...    35   2.5  

>tr|A9RMV8|A9RMV8_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_160029 PE=4 SV=1
          Length = 4849

 Score = 90.9 bits (224), Expect = 3e-17
 Identities = 45/78 (57%), Positives = 59/78 (75%)
 Frame = +3

Query: 6    WITILVTADIALVELSLYKGTARDQALATAQVIGVWVAYKVNSIQESYIMASLKSLVVKD 185
            + TI V   I LVEL L+ G ARD +LAT QVIG WV+YK N+++ES  MASL+ L +KD
Sbjct: 1923 YTTIKVGVGIDLVELRLFIGGARDASLATVQVIGAWVSYKGNNVEESVFMASLERLSLKD 1982

Query: 186  DREGTEPALQHMIGKADE 239
            +REGT+P +Q+MIG AD+
Sbjct: 1983 EREGTDPEMQYMIGHADD 2000


>tr|A9TGH0|A9TGH0_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_169946 PE=4 SV=1
          Length = 4890

 Score = 87.0 bits (214), Expect = 4e-16
 Identities = 42/78 (53%), Positives = 57/78 (73%)
 Frame = +3

Query: 6    WITILVTADIALVELSLYKGTARDQALATAQVIGVWVAYKVNSIQESYIMASLKSLVVKD 185
            + TI V   I LVEL L+ G  RD +LAT Q+IGVW +YK N++  S +MASL+ L +KD
Sbjct: 1957 YTTIKVGVGIDLVELRLFVGGTRDASLATVQIIGVWASYKSNNVGASVVMASLERLSLKD 2016

Query: 186  DREGTEPALQHMIGKADE 239
            +REGT+P +Q+MIG AD+
Sbjct: 2017 EREGTDPEMQYMIGHADD 2034


>tr|B8BIA4|B8BIA4_ORYSI Putative uncharacterized protein OS=Oryza
            sativa subsp. indica GN=OsI_34684 PE=4 SV=1
          Length = 4102

 Score = 75.5 bits (184), Expect = 1e-12
 Identities = 36/77 (46%), Positives = 52/77 (67%)
 Frame = +3

Query: 3    SWITILVTADIALVELSLYKGTARDQALATAQVIGVWVAYKVNSIQESYIMASLKSLVVK 182
            +WIT  ++  I LVELSL+ G+ RD  +A+ Q  G W+ YK N+ +ES++ A+LK   V 
Sbjct: 1498 TWITNKISVSINLVELSLHSGSTRDSPMASMQASGAWLLYKSNTREESFLFATLKGFSVF 1557

Query: 183  DDREGTEPALQHMIGKA 233
            DDREGT+  L+  IGK+
Sbjct: 1558 DDREGTKDELRLAIGKS 1574


>tr|A3C7E5|A3C7E5_ORYSJ Putative uncharacterized protein OS=Oryza
            sativa subsp. japonica GN=OsJ_031217 PE=4 SV=1
          Length = 4161

 Score = 75.5 bits (184), Expect = 1e-12
 Identities = 36/77 (46%), Positives = 52/77 (67%)
 Frame = +3

Query: 3    SWITILVTADIALVELSLYKGTARDQALATAQVIGVWVAYKVNSIQESYIMASLKSLVVK 182
            +WIT  ++  I LVELSL+ G+ RD  +A+ Q  G W+ YK N+ +ES++ A+LK   V 
Sbjct: 1594 TWITNKISVSINLVELSLHSGSTRDSPMASMQASGAWLLYKSNTREESFLFATLKGFSVF 1653

Query: 183  DDREGTEPALQHMIGKA 233
            DDREGT+  L+  IGK+
Sbjct: 1654 DDREGTKDELRLAIGKS 1670


>tr|O23558|O23558_ARATH Putative uncharacterized protein dl4600c
           (Putative uncharacterized protein AT4g17130)
           OS=Arabidopsis thaliana GN=dl4600c PE=4 SV=1
          Length = 747

 Score = 73.2 bits (178), Expect = 6e-12
 Identities = 36/82 (43%), Positives = 52/82 (63%)
 Frame = +3

Query: 3   SWITILVTADIALVELSLYKGTARDQALATAQVIGVWVAYKVNSIQESYIMASLKSLVVK 182
           +WI++ V+  I LVEL LY GTARD  LA  Q+ G W+ YK N+  E ++ A+LK   V 
Sbjct: 111 TWISMKVSVVINLVELCLYAGTARDTPLAAVQISGGWLLYKSNTHDEGFLTATLKGFSVI 170

Query: 183 DDREGTEPALQHMIGKADENDY 248
           D+REGTE   +  +G+  + D+
Sbjct: 171 DNREGTEKEFRLAVGRPADLDF 192


>tr|A7PCH0|A7PCH0_VITVI Chromosome chr2 scaffold_11, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00015858001
           PE=4 SV=1
          Length = 794

 Score = 72.8 bits (177), Expect = 8e-12
 Identities = 36/78 (46%), Positives = 49/78 (62%)
 Frame = +3

Query: 3   SWITILVTADIALVELSLYKGTARDQALATAQVIGVWVAYKVNSIQESYIMASLKSLVVK 182
           SWI + V+  + LVEL L+ G ARD +LAT QV G W+ YK N++ +  + A+LK   V 
Sbjct: 252 SWIALKVSVFVNLVELCLHAGIARDTSLATVQVSGAWLLYKSNTLGDGLLSATLKGFTVL 311

Query: 183 DDREGTEPALQHMIGKAD 236
           DDR GTE   +  IGK +
Sbjct: 312 DDRVGTEQEFRLAIGKPE 329


>tr|A9TTH3|A9TTH3_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_96917 PE=4 SV=1
          Length = 4687

 Score = 43.9 bits (102), Expect = 0.004
 Identities = 24/69 (34%), Positives = 35/69 (50%)
 Frame = +3

Query: 21   VTADIALVELSLYKGTARDQALATAQVIGVWVAYKVNSIQESYIMASLKSLVVKDDREGT 200
            VT D+  VEL LY G   +  LA  ++   W++Y   S     I+ +L  L V D R  T
Sbjct: 1718 VTVDVRQVELDLYIGLESEIPLARLEIQKFWLSYCNTSTNNMDILITLSKLSVLDQRPDT 1777

Query: 201  EPALQHMIG 227
             P ++ M+G
Sbjct: 1778 RPEMRLMLG 1786


>tr|Q6K796|Q6K796_ORYSJ Vacuolar protein sorting 13C protein-like
            OS=Oryza sativa subsp. japonica GN=OJ1371_D04.19 PE=4
            SV=1
          Length = 4190

 Score = 39.3 bits (90), Expect = 0.10
 Identities = 19/75 (25%), Positives = 37/75 (49%)
 Frame = +3

Query: 15   ILVTADIALVELSLYKGTARDQALATAQVIGVWVAYKVNSIQESYIMASLKSLVVKDDRE 194
            +++T D+      L  G   +  LA   + G+WV+Y+  S+ E  +  S+   ++ D R 
Sbjct: 1613 VVMTVDVQYALFELRNGPDAESPLAELVLEGLWVSYRTTSLFEMDLYLSILKFLIHDIRP 1672

Query: 195  GTEPALQHMIGKADE 239
             T+  ++ M+G   E
Sbjct: 1673 DTKSEMRLMLGSYSE 1687


>tr|Q0E193|Q0E193_ORYSJ Os02g0470400 protein OS=Oryza sativa subsp.
           japonica GN=Os02g0470400 PE=4 SV=1
          Length = 3088

 Score = 39.3 bits (90), Expect = 0.10
 Identities = 19/75 (25%), Positives = 37/75 (49%)
 Frame = +3

Query: 15  ILVTADIALVELSLYKGTARDQALATAQVIGVWVAYKVNSIQESYIMASLKSLVVKDDRE 194
           +++T D+      L  G   +  LA   + G+WV+Y+  S+ E  +  S+   ++ D R 
Sbjct: 557 VVMTVDVQYALFELRNGPDAESPLAELVLEGLWVSYRTTSLFEMDLYLSILKFLIHDIRP 616

Query: 195 GTEPALQHMIGKADE 239
            T+  ++ M+G   E
Sbjct: 617 DTKSEMRLMLGSYSE 631


>tr|B8AHJ5|B8AHJ5_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_07166 PE=4 SV=1
          Length = 3207

 Score = 39.3 bits (90), Expect = 0.10
 Identities = 19/75 (25%), Positives = 37/75 (49%)
 Frame = +3

Query: 15  ILVTADIALVELSLYKGTARDQALATAQVIGVWVAYKVNSIQESYIMASLKSLVVKDDRE 194
           +++T D+      L  G   +  LA   + G+WV+Y+  S+ E  +  S+   ++ D R 
Sbjct: 625 VVMTVDVQYALFELRNGPDAESPLAELVLEGLWVSYRTTSLFEMDLYLSILKFLIHDIRP 684

Query: 195 GTEPALQHMIGKADE 239
            T+  ++ M+G   E
Sbjct: 685 DTKSEMRLMLGSYSE 699