BP916917
Clone id YMU001_000093_E10
Library
Length 313
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000093_E10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CACACACGGGGGGGAATTGGTGAGTAAATTAAAGAGCATTGAATATTCAGTGTTGGCACC
CAAAGCTAAGTTGTATTGTGAAATATGTGACAAAGAAGGACATGCCATCTCTAGGTGTTG
GTTTAACCCCAGGAACAGGGAGCGGTCAAATACAGGAAGAGGTAGAGTTGAAGCTGCTGC
AAATCAGGTAGCTCCATTTAGAGAAAGACAACCATTTAATAGACCACCAAGACCTCCAAG
ACCTCCTTGGAGAGAGAAAAACAATAATCAGAGAAGAGGAGATAGAGTGATTCCTTGTGT
CTATTGTGGATCA
■■Homology search results ■■ -
sp_hit_id P19027
Definition sp|P19027|GAG_FIVSD Gag polyprotein OS=Feline immunodeficiency virus (strain San Diego)
Align length 38
Score (bit) 32.0
E-value 0.98
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916917|Adiantum capillus-veneris mRNA, clone:
YMU001_000093_E10.
(313 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P19027|GAG_FIVSD Gag polyprotein OS=Feline immunodeficiency v... 32 0.98
sp|Q05313|GAG_FIVWO Gag polyprotein OS=Feline immunodeficiency v... 31 2.2
sp|P16087|GAG_FIVPE Gag polyprotein OS=Feline immunodeficiency v... 31 2.2
sp|P31821|GAG_FIVT2 Gag polyprotein OS=Feline immunodeficiency v... 30 2.9

>sp|P19027|GAG_FIVSD Gag polyprotein OS=Feline immunodeficiency
virus (strain San Diego) GN=gag PE=3 SV=1
Length = 450

Score = 32.0 bits (71), Expect = 0.98
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +2

Query: 77 CEICDKEGHAISRCWFNPRNRERSNTGRGRVEAAANQV 190
C C K GH ++CW + R N GR A NQV
Sbjct: 396 CNKCGKPGHLAAKCWQGGK-RNSGNWKAGRAAAPVNQV 432


>sp|Q05313|GAG_FIVWO Gag polyprotein OS=Feline immunodeficiency
virus (isolate Wo) GN=gag PE=3 SV=1
Length = 450

Score = 30.8 bits (68), Expect = 2.2
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +2

Query: 77 CEICDKEGHAISRCWFNPRNRERSNTGRGRVEAAANQV 190
C C K GH ++CW + + N GR A NQV
Sbjct: 396 CNKCGKPGHLAAKCWQGGK-KNSGNWKAGRAAAPVNQV 432


>sp|P16087|GAG_FIVPE Gag polyprotein OS=Feline immunodeficiency
virus (isolate Petaluma) GN=gag PE=3 SV=1
Length = 450

Score = 30.8 bits (68), Expect = 2.2
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +2

Query: 77 CEICDKEGHAISRCWFNPRNRERSNTGRGRVEAAANQV 190
C C K GH ++CW R + N GR A NQ+
Sbjct: 396 CNKCGKPGHLAAKCWQGNR-KNSGNWKAGRAAAPVNQM 432


>sp|P31821|GAG_FIVT2 Gag polyprotein OS=Feline immunodeficiency
virus (isolate TM2) GN=gag PE=3 SV=1
Length = 449

Score = 30.4 bits (67), Expect = 2.9
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +2

Query: 77 CEICDKEGHAISRCWFNPRNRERSNTGRGRVEAAANQV 190
C C K GH + CW R + N GR A NQV
Sbjct: 396 CNNCGKPGHLAANCWQGGR-KTSGNEKVGRAAAPVNQV 432


tr_hit_id A5C2U4
Definition tr|A5C2U4|A5C2U4_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 43
Score (bit) 40.0
E-value 0.058
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916917|Adiantum capillus-veneris mRNA, clone:
YMU001_000093_E10.
(313 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A5C2U4|A5C2U4_VITVI Putative uncharacterized protein OS=Vitis... 40 0.058
tr|A5C2Z8|A5C2Z8_VITVI Putative uncharacterized protein OS=Vitis... 35 1.9
tr|A5BPJ0|A5BPJ0_VITVI Putative uncharacterized protein OS=Vitis... 35 1.9
tr|A5ANW4|A5ANW4_VITVI Putative uncharacterized protein OS=Vitis... 34 3.2
tr|Q48CL0|Q48CL0_PSE14 Peptidase, M16 family OS=Pseudomonas syri... 34 3.2
tr|Q68LA9|Q68LA9_9RETR Gag polyprotein OS=Feline immunodeficienc... 34 4.2
tr|Q6I5B6|Q6I5B6_ORYSJ Putative polyprotein OS=Oryza sativa subs... 34 4.2
tr|Q0DJY1|Q0DJY1_ORYSJ Os05g0214700 protein OS=Oryza sativa subs... 34 4.2
tr|A3B153|A3B153_ORYSJ Putative uncharacterized protein OS=Oryza... 34 4.2
tr|A8NPS3|A8NPS3_COPC7 Putative uncharacterized protein OS=Copri... 34 4.2
tr|Q4ZM42|Q4ZM42_PSEU2 Insulinase-like:Peptidase M16, C-terminal... 34 4.2
tr|Q75IK3|Q75IK3_ORYSJ Putative polyprotein OS=Oryza sativa subs... 33 5.5
tr|B6REM4|B6REM4_9BRAS Pol polyprotein OS=Boechera divaricarpa G... 33 5.5
tr|A5DL63|A5DL63_PICGU Predicted protein OS=Pichia guilliermondi... 33 5.5
tr|Q94LG0|Q94LG0_ORYSJ Putative retroelement pol polyprotein (Re... 33 7.1
tr|Q8W5D4|Q8W5D4_ORYSA Putative retrotransposon-related protein ... 33 7.1
tr|Q7G640|Q7G640_ORYSJ Putative retrotransposon protein (Retrotr... 33 7.1
tr|Q75HA9|Q75HA9_ORYSJ Putative polyprotein (Retrotransposon pro... 33 7.1
tr|A5BZ48|A5BZ48_VITVI Putative uncharacterized protein OS=Vitis... 33 7.1
tr|B2BWI1|B2BWI1_9RETR Gag protein OS=Feline immunodeficiency vi... 33 9.3
tr|Q9ZQK0|Q9ZQK0_ARATH Putative retroelement pol polyprotein OS=... 33 9.3
tr|A5BNN7|A5BNN7_VITVI Putative uncharacterized protein OS=Vitis... 33 9.3
tr|A5BJM5|A5BJM5_VITVI Putative uncharacterized protein OS=Vitis... 33 9.3
tr|A5B4Y2|A5B4Y2_VITVI Putative uncharacterized protein (Fragmen... 33 9.3
tr|A5ADY5|A5ADY5_VITVI Putative uncharacterized protein OS=Vitis... 33 9.3
tr|Q552K2|Q552K2_DICDI Putative uncharacterized protein OS=Dicty... 33 9.3
tr|Q54ZT6|Q54ZT6_DICDI Putative uncharacterized protein OS=Dicty... 33 9.3
tr|Q54X45|Q54X45_DICDI Putative uncharacterized protein OS=Dicty... 33 9.3
tr|Q54W45|Q54W45_DICDI Putative uncharacterized protein OS=Dicty... 33 9.3
tr|Q54KC3|Q54KC3_DICDI Putative uncharacterized protein (Fragmen... 33 9.3

>tr|A5C2U4|A5C2U4_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_029387 PE=4 SV=1
Length = 314

Score = 40.0 bits (92), Expect = 0.058
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +2

Query: 56 APKAKLYCEICDKEGHAISRCWFNPRNRERSNTGRGRVEAAAN 184
+P +YC+ICDKEGH +CW +++ +T AA +
Sbjct: 229 SPSFPVYCQICDKEGHLAKQCWMFLNLKKKQSTNLAEAFAACS 271


>tr|A5C2Z8|A5C2Z8_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_014759 PE=4 SV=1
Length = 430

Score = 35.0 bits (79), Expect = 1.9
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +2

Query: 65 AKLYCEICDKEGHAISRCW 121
+ ++C++CDKEGH RCW
Sbjct: 255 SSVHCQLCDKEGHLAKRCW 273


>tr|A5BPJ0|A5BPJ0_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_021909 PE=4 SV=1
Length = 1361

Score = 35.0 bits (79), Expect = 1.9
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +2

Query: 65 AKLYCEICDKEGHAISRCW 121
+ ++C++CDKEGH RCW
Sbjct: 385 SSVHCQLCDKEGHLAKRCW 403


>tr|A5ANW4|A5ANW4_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_043228 PE=4 SV=1
Length = 717

Score = 34.3 bits (77), Expect = 3.2
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +2

Query: 56 APKAKLYCEICDKEGHAISRCW--FNPRNRERSN 151
+P + +YC+ICDKEG+ R W N + ++ +N
Sbjct: 160 SPSSLVYCQICDKEGYLAKRYWTFLNLKKKQSAN 193


>tr|Q48CL0|Q48CL0_PSE14 Peptidase, M16 family OS=Pseudomonas
syringae pv. phaseolicola (strain 1448A / Race 6)
GN=PSPPH_4783 PE=3 SV=1
Length = 497

Score = 34.3 bits (77), Expect = 3.2
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +3

Query: 33 RALNIQCWHPKLSCIVKYVTKKDMPSLGVGLTPGTGSGQIQEEVELKLL 179
RALNIQ W+ V +V +++P + LT GS Q Q+ + LL
Sbjct: 63 RALNIQTWNTAEGARVLFVESRELPMFDMRLTFAAGSSQDQKSPGIALL 111


>tr|Q68LA9|Q68LA9_9RETR Gag polyprotein OS=Feline immunodeficiency
virus GN=gag PE=4 SV=1
Length = 449

Score = 33.9 bits (76), Expect = 4.2
Identities = 16/38 (42%), Positives = 18/38 (47%)
Frame = +2

Query: 77 CEICDKEGHAISRCWFNPRNRERSNTGRGRVEAAANQV 190
C C K GH ++CW RN N GR A NQV
Sbjct: 396 CNKCGKPGHLAAKCWQGSRNAS-GNGKMGRAAAPVNQV 432


>tr|Q6I5B6|Q6I5B6_ORYSJ Putative polyprotein OS=Oryza sativa subsp.
japonica GN=OSJNBb0067H15.15 PE=4 SV=1
Length = 1204

Score = 33.9 bits (76), Expect = 4.2
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2

Query: 50 VLAPKAKLYCEICDKEGHAISRCWFNPRNRERSNTGRG 163
V + + L+C CDK+GH S C+ ++ R N+ +G
Sbjct: 285 VPSTRGHLHCTYCDKDGHVESFCFRKKKDLRRGNSSKG 322


>tr|Q0DJY1|Q0DJY1_ORYSJ Os05g0214700 protein OS=Oryza sativa subsp.
japonica GN=Os05g0214700 PE=4 SV=1
Length = 1316

Score = 33.9 bits (76), Expect = 4.2
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2

Query: 50 VLAPKAKLYCEICDKEGHAISRCWFNPRNRERSNTGRG 163
V + + L+C CDK+GH S C+ ++ R N+ +G
Sbjct: 371 VPSTRGHLHCTYCDKDGHVESFCFRKKKDLRRGNSSKG 408


>tr|A3B153|A3B153_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_016775 PE=4 SV=1
Length = 639

Score = 33.9 bits (76), Expect = 4.2
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2

Query: 50 VLAPKAKLYCEICDKEGHAISRCWFNPRNRERSNTGRG 163
V + + L+C CDK+GH S C+ ++ R N+ +G
Sbjct: 285 VPSTRGHLHCTYCDKDGHVESFCFRKKKDLRRGNSSKG 322


>tr|A8NPS3|A8NPS3_COPC7 Putative uncharacterized protein
OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC
9003) GN=CC1G_05351 PE=4 SV=1
Length = 964

Score = 33.9 bits (76), Expect = 4.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2

Query: 59 PKAKLYCEICDKEGHAISRCW 121
PKAK+ C C + GH +S CW
Sbjct: 286 PKAKVICSHCKRSGHEVSTCW 306