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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916927
Clone id YMU001_000093_F08
Library
Length 521
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000093_F08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AATTCGCGGCCGCGAATTCTTCCAGCATGAAAGATTAGAGCTATGCCTACAAATGTTGCA
TCATACAACCTGAAATTCCTAACCTTTAGTATGATGGTTAGACAACACCATCGACATTAG
GATTTTTTTAAATGTGAACTTTCGTGTTACCTGTGCTTTAGTGCTCGGTGTCCAGTGAAA
ACCAGACCCTTGGAAACGTATGAGCTAATGAACCCTAACTACTTGTACATTTGACATGCT
CGACAAGTAGAAAATCGAGAACCAAAGAATGTTCGGAGGCACCCGGGAGTACGAACATGC
TAGCTGTACACCTTTAGGAAGACACGTTCTGTATCTAGCAGGTATCAAATGAGACTCTCT
CAATTATTGCAAGAATCTCTGCAACTGGTCCACGATCTAGAAATAGATGGGCTTGCAATT
CGCCATGGTCACCTCAAAAGGGCAATAGGGGCACTTGAAATTTCTGCTTTATGAGAGCTT
TTGAAGTGATTGCTTGCAGAGTACATGTCCACATGGCATAA
■■Homology search results ■■ -
sp_hit_id Q640V2
Definition sp|Q640V2|RMD5A_XENTR Protein RMD5 homolog A OS=Xenopus tropicalis
Align length 38
Score (bit) 42.4
E-value 0.001
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916927|Adiantum capillus-veneris mRNA, clone:
YMU001_000093_F08.
         (496 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q640V2|RMD5A_XENTR Protein RMD5 homolog A OS=Xenopus tropical...    42   0.001
sp|Q6GLP4|RMD5A_XENLA Protein RMD5 homolog A OS=Xenopus laevis G...    42   0.001
sp|Q9H871|RMD5A_HUMAN Protein RMD5 homolog A OS=Homo sapiens GN=...    42   0.001
sp|Q91YQ7|RMD5B_MOUSE Protein RMD5 homolog B OS=Mus musculus GN=...    41   0.003
sp|Q96G75|RMD5B_HUMAN Protein RMD5 homolog B OS=Homo sapiens GN=...    41   0.003
sp|Q12508|RMD5_YEAST Sporulation protein RMD5 OS=Saccharomyces c...    39   0.010
sp|Q80YQ8|RMD5A_MOUSE Protein RMD5 homolog A OS=Mus musculus GN=...    39   0.010
sp|Q8RXD6|BRE1A_ARATH E3 ubiquitin-protein ligase BRE1-like 1 OS...    35   0.25 
sp|Q7XU27|BRE1A_ORYSJ E3 ubiquitin-protein ligase BRE1-like 1 OS...    34   0.42 
sp|A2XW69|BRE1A_ORYSI E3 ubiquitin-protein ligase BRE1-like 1 OS...    34   0.42 
sp|Q4WDD7|BRE1_ASPFU E3 ubiquitin-protein ligase bre1 OS=Aspergi...    33   0.93 
sp|Q2U9B0|BRE1_ASPOR E3 ubiquitin-protein ligase bre1 OS=Aspergi...    32   1.6  
sp|Q925F4|RNF37_MOUSE RING finger protein 37 OS=Mus musculus GN=...    32   2.1  
sp|Q8CH72|TRI32_MOUSE Tripartite motif-containing protein 32 OS=...    31   2.7  
sp|Q13049|TRI32_HUMAN Tripartite motif-containing protein 32 OS=...    31   2.7  
sp|Q4P3X7|BRE1_USTMA E3 ubiquitin-protein ligase BRE1 OS=Ustilag...    31   2.7  
sp|Q5KBI0|BRE1_CRYNE E3 ubiquitin-protein ligase BRE1 OS=Cryptoc...    31   2.7  
sp|P22682|CBL_MOUSE E3 ubiquitin-protein ligase CBL OS=Mus muscu...    31   3.5  
sp|P22681|CBL_HUMAN E3 ubiquitin-protein ligase CBL OS=Homo sapi...    31   3.5  
sp|Q9ULV8|CBLC_HUMAN Signal transduction protein CBL-C OS=Homo s...    31   3.5  
sp|Q80XL1|CBLC_MOUSE Signal transduction protein CBL-C OS=Mus mu...    30   4.6  
sp|Q6DFR2|CBLB_XENTR E3 ubiquitin-protein ligase CBL-B OS=Xenopu...    30   6.0  
sp|Q6NRE7|CBLBB_XENLA E3 ubiquitin-protein ligase CBL-B-B OS=Xen...    30   6.0  
sp|Q6GQL0|CBLBA_XENLA E3 ubiquitin-protein ligase CBL-B-A OS=Xen...    30   6.0  
sp|Q80XJ2|RN168_MOUSE RING finger protein 168 OS=Mus musculus GN...    30   7.9  
sp|Q8IYW5|RN168_HUMAN RING finger protein 168 OS=Homo sapiens GN...    30   7.9  
sp|Q9MIZ0|NU1M_DANRE NADH-ubiquinone oxidoreductase chain 1 OS=D...    30   7.9  
sp|Q8K4S7|CBLB_RAT E3 ubiquitin-protein ligase CBL-B OS=Rattus n...    30   7.9  
sp|Q3TTA7|CBLB_MOUSE E3 ubiquitin-protein ligase CBL-B OS=Mus mu...    30   7.9  
sp|Q13191|CBLB_HUMAN E3 ubiquitin-protein ligase CBL-B OS=Homo s...    30   7.9  

>sp|Q640V2|RMD5A_XENTR Protein RMD5 homolog A OS=Xenopus tropicalis
           GN=rmnd5a PE=2 SV=1
          Length = 391

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -3

Query: 488 CGHVLCKQSLQKLS*SRNFKCPYCPFEVTMANCKPIYF 375
           CGH++ + +L K+      KCPYCP E +  + K I+F
Sbjct: 354 CGHIISRDALNKMFNGSKLKCPYCPMEQSPGDAKQIFF 391


>sp|Q6GLP4|RMD5A_XENLA Protein RMD5 homolog A OS=Xenopus laevis
           GN=rmnd5a PE=2 SV=1
          Length = 391

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -3

Query: 488 CGHVLCKQSLQKLS*SRNFKCPYCPFEVTMANCKPIYF 375
           CGH++ + +L K+      KCPYCP E +  + K I+F
Sbjct: 354 CGHIISRDALNKMFNGSKLKCPYCPMEQSPGDAKQIFF 391


>sp|Q9H871|RMD5A_HUMAN Protein RMD5 homolog A OS=Homo sapiens
           GN=RMND5A PE=1 SV=1
          Length = 391

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -3

Query: 488 CGHVLCKQSLQKLS*SRNFKCPYCPFEVTMANCKPIYF 375
           CGH++ + +L K+      KCPYCP E +  + K I+F
Sbjct: 354 CGHIISRDALNKMFNGSKLKCPYCPMEQSPGDAKQIFF 391


>sp|Q91YQ7|RMD5B_MOUSE Protein RMD5 homolog B OS=Mus musculus
           GN=Rmnd5b PE=2 SV=1
          Length = 393

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 18/38 (47%), Positives = 22/38 (57%)
 Frame = -3

Query: 488 CGHVLCKQSLQKLS*SRNFKCPYCPFEVTMANCKPIYF 375
           CGHV+ + +L KL      KCPYCP E   A+ K I F
Sbjct: 356 CGHVISRDALNKLINGGKLKCPYCPMEQNPADGKRIIF 393


>sp|Q96G75|RMD5B_HUMAN Protein RMD5 homolog B OS=Homo sapiens
           GN=RMND5B PE=2 SV=1
          Length = 393

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 18/38 (47%), Positives = 22/38 (57%)
 Frame = -3

Query: 488 CGHVLCKQSLQKLS*SRNFKCPYCPFEVTMANCKPIYF 375
           CGHV+ + +L KL      KCPYCP E   A+ K I F
Sbjct: 356 CGHVISRDALNKLINGGKLKCPYCPMEQNPADGKRIIF 393


>sp|Q12508|RMD5_YEAST Sporulation protein RMD5 OS=Saccharomyces
           cerevisiae GN=RMD5 PE=1 SV=1
          Length = 421

 Score = 39.3 bits (90), Expect = 0.010
 Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
 Frame = -3

Query: 494 MPCGHVLCKQSLQKLS*SRN--FKCPYCPFEVTMANCKPIYF 375
           + C H++ K++L +LS +    FKCPYCP   +M++ K + F
Sbjct: 377 LACHHIISKKALDRLSKNGTITFKCPYCPVNTSMSSTKKVRF 418


>sp|Q80YQ8|RMD5A_MOUSE Protein RMD5 homolog A OS=Mus musculus
           GN=Rmnd5a PE=2 SV=1
          Length = 391

 Score = 39.3 bits (90), Expect = 0.010
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -3

Query: 488 CGHVLCKQSLQKLS*SRNFKCPYCPFEVTMANCKPIYF 375
           CGH++ + +L K+      KCPYC  E +  + K I+F
Sbjct: 354 CGHIISRDALNKMFNGSKLKCPYCSMEQSPGDAKQIFF 391


>sp|Q8RXD6|BRE1A_ARATH E3 ubiquitin-protein ligase BRE1-like 1
           OS=Arabidopsis thaliana GN=HUB1 PE=1 SV=1
          Length = 878

 Score = 34.7 bits (78), Expect = 0.25
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -3

Query: 488 CGHVLCKQSLQKLS*SRNFKCPYCPFEVTMANCKPIY 378
           C H+ C   +QKL+ +R  KCP C       + KPIY
Sbjct: 841 CYHLFCNPCVQKLTGTRQKKCPTCSASFGPNDIKPIY 877


>sp|Q7XU27|BRE1A_ORYSJ E3 ubiquitin-protein ligase BRE1-like 1
           OS=Oryza sativa subsp. japonica GN=BRE1A PE=2 SV=3
          Length = 884

 Score = 33.9 bits (76), Expect = 0.42
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 488 CGHVLCKQSLQKLS*SRNFKCPYCPFEVTMANCKPIY 378
           C H+ C Q +QK   +R  +CP C       + KPIY
Sbjct: 847 CYHLFCNQCIQKSLGNRQRRCPSCSLSFGANDVKPIY 883


>sp|A2XW69|BRE1A_ORYSI E3 ubiquitin-protein ligase BRE1-like 1
           OS=Oryza sativa subsp. indica GN=BRE1A PE=3 SV=2
          Length = 884

 Score = 33.9 bits (76), Expect = 0.42
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 488 CGHVLCKQSLQKLS*SRNFKCPYCPFEVTMANCKPIY 378
           C H+ C Q +QK   +R  +CP C       + KPIY
Sbjct: 847 CYHLFCNQCIQKSLGNRQRRCPSCSLSFGANDVKPIY 883
tr_hit_id A9RK55
Definition tr|A9RK55|A9RK55_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 42
Score (bit) 64.7
E-value 2.0e-09
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916927|Adiantum capillus-veneris mRNA, clone:
YMU001_000093_F08.
         (496 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RK55|A9RK55_PHYPA Predicted protein OS=Physcomitrella paten...    65   2e-09
tr|A9SBV1|A9SBV1_PHYPA Predicted protein OS=Physcomitrella paten...    62   1e-08
tr|A7QSA7|A7QSA7_VITVI Chromosome chr3 scaffold_157, whole genom...    62   1e-08
tr|A5BZB1|A5BZB1_VITVI Putative uncharacterized protein (Fragmen...    62   1e-08
tr|A9S551|A9S551_PHYPA Predicted protein OS=Physcomitrella paten...    61   3e-08
tr|A2Q1B6|A2Q1B6_MEDTR Zinc finger, RING-type (Fragment) OS=Medi...    60   7e-08
tr|A9P7T7|A9P7T7_POPTR Putative uncharacterized protein OS=Popul...    59   2e-07
tr|Q9ZQ45|Q9ZQ45_ARATH Expressed protein (At2g22690) (RING finge...    58   3e-07
tr|Q8LA81|Q8LA81_ARATH Putative uncharacterized protein OS=Arabi...    58   3e-07
tr|A9S273|A9S273_PHYPA Predicted protein OS=Physcomitrella paten...    57   4e-07
tr|Q69K99|Q69K99_ORYSJ Os06g0588900 protein OS=Oryza sativa subs...    56   8e-07
tr|B6TBA9|B6TBA9_MAIZE Protein UNQ2508/PRO5996 OS=Zea mays PE=2 ...    56   8e-07
tr|A2YEI9|A2YEI9_ORYSI Putative uncharacterized protein OS=Oryza...    56   8e-07
tr|A6SKZ1|A6SKZ1_BOTFB Putative uncharacterized protein OS=Botry...    54   4e-06
tr|Q9T075|Q9T075_ARATH Putative uncharacterized protein AT4g3788...    53   7e-06
tr|Q9LXC7|Q9LXC7_ARATH Putative uncharacterized protein F17I14_1...    53   7e-06
tr|Q86A99|Q86A99_DICDI Similar to Arabidopsis thaliana (Mouse-ea...    53   9e-06
tr|Q555R9|Q555R9_DICDI Putative uncharacterized protein OS=Dicty...    53   9e-06
tr|A7ELW7|A7ELW7_SCLS1 Putative uncharacterized protein OS=Scler...    52   1e-05
tr|B6QKJ4|B6QKJ4_PENMA Regulator of gluconeogenesis Rmd5, putati...    52   2e-05
tr|B6QKJ3|B6QKJ3_PENMA Regulator of gluconeogenesis Rmd5, putati...    52   2e-05
tr|A8JF09|A8JF09_CHLRE Predicted protein (Fragment) OS=Chlamydom...    50   4e-05
tr|B8MGQ5|B8MGQ5_9EURO Regulator of gluconeogenesis Rmd5, putati...    50   4e-05
tr|B2A9T7|B2A9T7_PODAN Predicted CDS Pa_1_1750 OS=Podospora anse...    49   1e-04
tr|B2W4S3|B2W4S3_PYRTR Putative uncharacterized protein OS=Pyren...    49   2e-04
tr|Q1DXN7|Q1DXN7_COCIM Putative uncharacterized protein OS=Cocci...    48   2e-04
tr|B6AIC5|B6AIC5_9CRYT Putative uncharacterized protein OS=Crypt...    47   6e-04
tr|O59668|O59668_SCHPO Ubiquitin-protein ligase E3 (Predicted) O...    47   6e-04
tr|B6H8C4|B6H8C4_PENCH Pc16g09290 protein OS=Penicillium chrysog...    47   6e-04
tr|Q6TLH0|Q6TLH0_DANRE Putative uncharacterized protein OS=Danio...    46   8e-04

>tr|A9RK55|A9RK55_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_203246 PE=4 SV=1
          Length = 385

 Score = 64.7 bits (156), Expect = 2e-09
 Identities = 29/42 (69%), Positives = 33/42 (78%), Gaps = 2/42 (4%)
 Frame = -3

Query: 494 MPCGHVLCKQSLQKL--S*SRNFKCPYCPFEVTMANCKPIYF 375
           M CGHVLCKQS+QKL  S SR FKCPYCPFE + + C+ IYF
Sbjct: 344 MRCGHVLCKQSIQKLTKSNSRMFKCPYCPFETSASQCRQIYF 385


>tr|A9SBV1|A9SBV1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_210613 PE=4 SV=1
          Length = 385

 Score = 62.4 bits (150), Expect = 1e-08
 Identities = 29/42 (69%), Positives = 31/42 (73%), Gaps = 2/42 (4%)
 Frame = -3

Query: 494 MPCGHVLCKQSLQKL--S*SRNFKCPYCPFEVTMANCKPIYF 375
           M CGHVLCKQS+QKL  S SR FKCPYCP E T   C+ IYF
Sbjct: 344 MCCGHVLCKQSIQKLTKSNSRMFKCPYCPLETTANQCRQIYF 385


>tr|A7QSA7|A7QSA7_VITVI Chromosome chr3 scaffold_157, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00005751001
           PE=4 SV=1
          Length = 383

 Score = 62.0 bits (149), Expect = 1e-08
 Identities = 28/42 (66%), Positives = 31/42 (73%), Gaps = 2/42 (4%)
 Frame = -3

Query: 494 MPCGHVLCKQSLQKLS*S--RNFKCPYCPFEVTMANCKPIYF 375
           MPCGHVLCKQS+ KLS S  R FKCPYCP E T+  C  +YF
Sbjct: 342 MPCGHVLCKQSIMKLSKSSTRMFKCPYCPNESTVGQCMQLYF 383


>tr|A5BZB1|A5BZB1_VITVI Putative uncharacterized protein (Fragment)
           OS=Vitis vinifera GN=VITISV_029625 PE=4 SV=1
          Length = 153

 Score = 62.0 bits (149), Expect = 1e-08
 Identities = 28/42 (66%), Positives = 31/42 (73%), Gaps = 2/42 (4%)
 Frame = -3

Query: 494 MPCGHVLCKQSLQKLS*S--RNFKCPYCPFEVTMANCKPIYF 375
           MPCGHVLCKQS+ KLS S  R FKCPYCP E T+  C  +YF
Sbjct: 112 MPCGHVLCKQSIMKLSKSSTRMFKCPYCPNESTVGQCTQLYF 153


>tr|A9S551|A9S551_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_105796 PE=4 SV=1
          Length = 384

 Score = 60.8 bits (146), Expect = 3e-08
 Identities = 27/42 (64%), Positives = 32/42 (76%), Gaps = 2/42 (4%)
 Frame = -3

Query: 494 MPCGHVLCKQSLQKL--S*SRNFKCPYCPFEVTMANCKPIYF 375
           M CGHVLCKQS+QKL  S SR FKCPYCP E++   C+ I+F
Sbjct: 343 MRCGHVLCKQSIQKLAKSNSRTFKCPYCPQEISATQCRQIHF 384


>tr|A2Q1B6|A2Q1B6_MEDTR Zinc finger, RING-type (Fragment)
           OS=Medicago truncatula GN=MtrDRAFT_AC148396g12v2 PE=4
           SV=1
          Length = 166

 Score = 59.7 bits (143), Expect = 7e-08
 Identities = 25/42 (59%), Positives = 33/42 (78%), Gaps = 2/42 (4%)
 Frame = -3

Query: 494 MPCGHVLCKQSLQKLS*S--RNFKCPYCPFEVTMANCKPIYF 375
           +PC HVLCKQS+ KLS +  R FKCPYCP E T+A+C+ ++F
Sbjct: 125 LPCLHVLCKQSIMKLSKNSTRTFKCPYCPAEATVAHCRQVFF 166


>tr|A9P7T7|A9P7T7_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 384

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 26/42 (61%), Positives = 31/42 (73%), Gaps = 2/42 (4%)
 Frame = -3

Query: 494 MPCGHVLCKQSLQKLS*--SRNFKCPYCPFEVTMANCKPIYF 375
           +PC HVLCKQS+ KLS   SR FKCPYCP E + A C+ +YF
Sbjct: 343 LPCLHVLCKQSIMKLSKGSSRAFKCPYCPAEASAAQCRQLYF 384


>tr|Q9ZQ45|Q9ZQ45_ARATH Expressed protein (At2g22690) (RING finger
           family protein) OS=Arabidopsis thaliana GN=At2g22690
           PE=2 SV=1
          Length = 381

 Score = 57.8 bits (138), Expect = 3e-07
 Identities = 23/42 (54%), Positives = 32/42 (76%), Gaps = 2/42 (4%)
 Frame = -3

Query: 494 MPCGHVLCKQSLQKLS*--SRNFKCPYCPFEVTMANCKPIYF 375
           + CGHVLCKQS+ ++S   SR+FKCPYCP ++  + CK +YF
Sbjct: 340 LACGHVLCKQSINRMSRNGSRSFKCPYCPTDIDASQCKQLYF 381


>tr|Q8LA81|Q8LA81_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 381

 Score = 57.8 bits (138), Expect = 3e-07
 Identities = 23/42 (54%), Positives = 32/42 (76%), Gaps = 2/42 (4%)
 Frame = -3

Query: 494 MPCGHVLCKQSLQKLS*--SRNFKCPYCPFEVTMANCKPIYF 375
           + CGHVLCKQS+ ++S   SR+FKCPYCP ++  + CK +YF
Sbjct: 340 LACGHVLCKQSINRMSRNGSRSFKCPYCPTDIDASQCKQLYF 381


>tr|A9S273|A9S273_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_73603 PE=4 SV=1
          Length = 386

 Score = 57.4 bits (137), Expect = 4e-07
 Identities = 23/41 (56%), Positives = 33/41 (80%), Gaps = 2/41 (4%)
 Frame = -3

Query: 494 MPCGHVLCKQSLQKL--S*SRNFKCPYCPFEVTMANCKPIY 378
           +PCGHVLC+QS+QKL  + +R FKCPYCP E T++ C+ ++
Sbjct: 345 LPCGHVLCRQSIQKLAKAPTRTFKCPYCPSETTLSLCQQLH 385