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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916929
Clone id YMU001_000093_F10
Library
Length 561
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000093_F10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTGTTTTTAGTTCAAACATTTCTAAAGGACGATTAAAAAACCAAAAGCATAAAACAGAGT
TTAGGCAGTCATATTTGTATCAATTAGCGCTTATTTCCTGCAAAAAGAGACTAGACCGTC
AACACCAGGCCTTCAAAGCCCAATAATAGAACGTGTAGCGCTAGCAAGCTAGACAAACCG
TACGTATCGCCTGGTACCAGATGCTCCCACAGGATACTAGCTCATCAAAAGCAGTCTTTA
AAAGTGACCGATAAGTAAACAAGAAGTTGTATATCTCATCTTGGCCTGCGCCGGGAATCC
CTTGAACCACGAGGTGACGAACTGTAGTTTCCATAGTCATGAGAGTAACCAACAGGAGAA
ACTGGCTCTTCTCTATGTTCTCTGCCACTGTATGCTGGTGCACTCCCATGCTGAGAACCC
TGTCCTCCCCCCCGTCCAGAGAAAAGATTTGTGCGTAGCCTTGTAAGGACCTGAACCAGC
GCAGGCTCAACCAGACCTGACTCCCCAGAAACCTGTACAAGTTCACTATTATCATCTGCA
CAGCTGGGAAGCTCCTCCTTC
■■Homology search results ■■ -
sp_hit_id Q6C457
Definition sp|Q6C457|UTP10_YARLI U3 small nucleolar RNA-associated protein 10 OS=Yarrowia lipolytica
Align length 59
Score (bit) 30.8
E-value 4.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916929|Adiantum capillus-veneris mRNA, clone:
YMU001_000093_F10.
         (561 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6C457|UTP10_YARLI U3 small nucleolar RNA-associated protein ...    31   4.7  
sp|Q5T197|DCST1_HUMAN DC-STAMP domain-containing protein 1 OS=Ho...    30   6.2  
sp|P19087|GNAT2_HUMAN Guanine nucleotide-binding protein G(t) su...    30   8.1  

>sp|Q6C457|UTP10_YARLI U3 small nucleolar RNA-associated protein 10
           OS=Yarrowia lipolytica GN=UTP10 PE=3 SV=1
          Length = 1635

 Score = 30.8 bits (68), Expect = 4.7
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = +2

Query: 260 QEVVYLILACAGN--PLNHEVTNCSFHSHESNQQEKLALLYVLCHCMLVHSHAENPVLP 430
           Q   Y++L   GN  PLN EV N    +  +N  +K     +LC   +     E  VLP
Sbjct: 250 QIAAYMVLTVLGNKMPLNKEVFNALVETIAANWTQKAIKSGILCITQMYQQKQEPEVLP 308


>sp|Q5T197|DCST1_HUMAN DC-STAMP domain-containing protein 1 OS=Homo
           sapiens GN=DCST1 PE=2 SV=1
          Length = 706

 Score = 30.4 bits (67), Expect = 6.2
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +3

Query: 9   SSNISKGRLKNQKHKTEFRQSYLYQLALISCKKRLDRQHQ 128
           +S +     K  + KT+ R SY+   A++SC++  DR+H+
Sbjct: 229 ASRLHLSTQKMYELKTKLRCSYVVNQAILSCRRWFDRKHE 268


>sp|P19087|GNAT2_HUMAN Guanine nucleotide-binding protein G(t)
           subunit alpha-2 OS=Homo sapiens GN=GNAT2 PE=2 SV=4
          Length = 354

 Score = 30.0 bits (66), Expect = 8.1
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = -2

Query: 548 PSCADDNSELVQV--SGESGLVEPALVQVLTRL 456
           PSCADD  +L  +  S E G + P LV+V+ RL
Sbjct: 98  PSCADDGRQLNNLADSIEEGTMPPELVEVIRRL 130
tr_hit_id B8LK75
Definition tr|B8LK75|B8LK75_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 40
Score (bit) 51.2
E-value 4.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916929|Adiantum capillus-veneris mRNA, clone:
YMU001_000093_F10.
         (561 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8LK75|B8LK75_PICSI Putative uncharacterized protein OS=Picea...    51   4e-05
tr|Q4U4H1|Q4U4H1_9ROSI KH domain-containing protein (Fragment) O...    47   7e-04
tr|Q0WNX3|Q0WNX3_ARATH Putative uncharacterized protein At5g1527...    47   0.001
tr|A7PMY5|A7PMY5_VITVI Chromosome chr14 scaffold_21, whole genom...    46   0.002
tr|A7NUF5|A7NUF5_VITVI Chromosome chr18 scaffold_1, whole genome...    45   0.002
tr|A5AYY7|A5AYY7_VITVI Putative uncharacterized protein OS=Vitis...    45   0.002
tr|A7Q161|A7Q161_VITVI Chromosome chr10 scaffold_43, whole genom...    45   0.003
tr|A5ATM4|A5ATM4_VITVI Putative uncharacterized protein OS=Vitis...    45   0.003
tr|Q14K66|Q14K66_PLAAC Putative nucleic acid binding protein (Fr...    44   0.005
tr|A9RYT2|A9RYT2_PHYPA Predicted protein (Fragment) OS=Physcomit...    44   0.008
tr|Q60D29|Q60D29_SOLDE KH domain containing protein OS=Solanum d...    43   0.010
tr|Q5NRN6|Q5NRN6_SOLDE KH domain containing protein, putative OS...    43   0.010
tr|A9PE42|A9PE42_POPTR Putative uncharacterized protein OS=Popul...    43   0.010
tr|A7PAQ3|A7PAQ3_VITVI Chromosome chr14 scaffold_9, whole genome...    43   0.010
tr|A5BVB2|A5BVB2_VITVI Putative uncharacterized protein (Fragmen...    43   0.010
tr|A7QEB2|A7QEB2_VITVI Chromosome chr1 scaffold_84, whole genome...    42   0.017
tr|A5C0V3|A5C0V3_VITVI Putative uncharacterized protein OS=Vitis...    42   0.017
tr|Q8S7G1|Q8S7G1_ORYSA Putative nucleic acid binding protein OS=...    42   0.023
tr|Q10KN9|Q10KN9_ORYSJ Os03g0376800 protein OS=Oryza sativa subs...    42   0.023
tr|B8AQL7|B8AQL7_ORYSI Putative uncharacterized protein OS=Oryza...    42   0.023
tr|A2XHA9|A2XHA9_ORYSI Putative uncharacterized protein OS=Oryza...    42   0.023
tr|Q9FNK3|Q9FNK3_ARATH Arabidopsis thaliana genomic DNA, chromos...    42   0.030
tr|Q9ASX3|Q9ASX3_ARATH AT5g46190/MCL19_25 (Fragment) OS=Arabidop...    42   0.030
tr|Q5NB89|Q5NB89_ORYSJ HEN4-like OS=Oryza sativa subsp. japonica...    41   0.050
tr|Q0JP89|Q0JP89_ORYSJ Os01g0235800 protein (Fragment) OS=Oryza ...    41   0.050
tr|B8AB32|B8AB32_ORYSI Putative uncharacterized protein OS=Oryza...    41   0.050
tr|A2ZR31|A2ZR31_ORYSJ Putative uncharacterized protein OS=Oryza...    41   0.050
tr|A7QM31|A7QM31_VITVI Chromosome undetermined scaffold_123, who...    40   0.086
tr|A5BXI6|A5BXI6_VITVI Putative uncharacterized protein OS=Vitis...    40   0.086
tr|A5AKJ4|A5AKJ4_VITVI Putative uncharacterized protein OS=Vitis...    40   0.086

>tr|B8LK75|B8LK75_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 650

 Score = 51.2 bits (121), Expect = 4e-05
 Identities = 22/40 (55%), Positives = 30/40 (75%)
 Frame = -2

Query: 560 KEELPSCADDNSELVQVSGESGLVEPALVQVLTRLRTNLF 441
           K+E P C  +N ELVQV+GE G+ + AL+Q+L RLR N+F
Sbjct: 437 KDERPICVSENEELVQVTGEPGVAKDALIQILKRLRENIF 476


>tr|Q4U4H1|Q4U4H1_9ROSI KH domain-containing protein (Fragment)
           OS=Betula platyphylla PE=2 SV=1
          Length = 166

 Score = 47.0 bits (110), Expect = 7e-04
 Identities = 21/40 (52%), Positives = 30/40 (75%)
 Frame = -2

Query: 560 KEELPSCADDNSELVQVSGESGLVEPALVQVLTRLRTNLF 441
           KE LP  A ++ E+VQ+SG+  + + AL+QV+TRLR NLF
Sbjct: 44  KENLPKVASEDDEMVQISGDLDVAKDALMQVVTRLRANLF 83


>tr|Q0WNX3|Q0WNX3_ARATH Putative uncharacterized protein At5g15270
           OS=Arabidopsis thaliana GN=At5g15270 PE=2 SV=1
          Length = 548

 Score = 46.6 bits (109), Expect = 0.001
 Identities = 20/40 (50%), Positives = 29/40 (72%)
 Frame = -2

Query: 560 KEELPSCADDNSELVQVSGESGLVEPALVQVLTRLRTNLF 441
           KE LP  A D+ E+VQ+SGE  + + AL+Q+ +RLR N+F
Sbjct: 408 KENLPKVASDDDEMVQISGELDVAKEALIQITSRLRANVF 447



 Score = 37.0 bits (84), Expect = 0.73
 Identities = 16/35 (45%), Positives = 26/35 (74%)
 Frame = -2

Query: 551 LPSCADDNSELVQVSGESGLVEPALVQVLTRLRTN 447
           +P CA ++ EL+Q+SGE  +V+ AL+Q+ +RL  N
Sbjct: 188 MPLCALNSDELIQISGEVLIVKKALLQIASRLHEN 222


>tr|A7PMY5|A7PMY5_VITVI Chromosome chr14 scaffold_21, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00020994001
           PE=4 SV=1
          Length = 548

 Score = 45.8 bits (107), Expect = 0.002
 Identities = 20/40 (50%), Positives = 29/40 (72%)
 Frame = -2

Query: 560 KEELPSCADDNSELVQVSGESGLVEPALVQVLTRLRTNLF 441
           KE LP  A ++ E+VQ++G+  + + AL+QV TRLR NLF
Sbjct: 407 KENLPKVASEDDEMVQIAGDLDVAKDALIQVTTRLRANLF 446



 Score = 42.4 bits (98), Expect = 0.017
 Identities = 20/37 (54%), Positives = 25/37 (67%)
 Frame = -2

Query: 557 EELPSCADDNSELVQVSGESGLVEPALVQVLTRLRTN 447
           + LPSCA  + ELVQ+SGE  LV  AL Q+ +RL  N
Sbjct: 178 DHLPSCALSSDELVQISGEPSLVRKALYQIASRLHDN 214


>tr|A7NUF5|A7NUF5_VITVI Chromosome chr18 scaffold_1, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00015027001
           PE=4 SV=1
          Length = 667

 Score = 45.4 bits (106), Expect = 0.002
 Identities = 19/40 (47%), Positives = 30/40 (75%)
 Frame = -2

Query: 560 KEELPSCADDNSELVQVSGESGLVEPALVQVLTRLRTNLF 441
           K+++P CA +N E+VQ++GE   V+ AL+Q+ TRLR + F
Sbjct: 458 KDQIPKCASENEEVVQINGEFEAVQEALLQITTRLRHHHF 497


>tr|A5AYY7|A5AYY7_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_026793 PE=4 SV=1
          Length = 709

 Score = 45.4 bits (106), Expect = 0.002
 Identities = 19/40 (47%), Positives = 30/40 (75%)
 Frame = -2

Query: 560 KEELPSCADDNSELVQVSGESGLVEPALVQVLTRLRTNLF 441
           K+++P CA +N E+VQ++GE   V+ AL+Q+ TRLR + F
Sbjct: 458 KDQIPKCASENEEVVQINGEFEAVQEALLQITTRLRHHHF 497


>tr|A7Q161|A7Q161_VITVI Chromosome chr10 scaffold_43, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00028326001
           PE=4 SV=1
          Length = 623

 Score = 44.7 bits (104), Expect = 0.003
 Identities = 21/36 (58%), Positives = 25/36 (69%)
 Frame = -2

Query: 560 KEELPSCADDNSELVQVSGESGLVEPALVQVLTRLR 453
           K E P CAD N EL++V GE G V  ALVQ++ RLR
Sbjct: 425 KSERPKCADANDELIEVVGEVGSVRDALVQIVLRLR 460


>tr|A5ATM4|A5ATM4_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_042181 PE=4 SV=1
          Length = 637

 Score = 44.7 bits (104), Expect = 0.003
 Identities = 21/36 (58%), Positives = 25/36 (69%)
 Frame = -2

Query: 560 KEELPSCADDNSELVQVSGESGLVEPALVQVLTRLR 453
           K E P CAD N EL++V GE G V  ALVQ++ RLR
Sbjct: 425 KSERPKCADANDELIEVVGEVGSVRDALVQIVLRLR 460


>tr|Q14K66|Q14K66_PLAAC Putative nucleic acid binding protein
           (Fragment) OS=Platanus acerifolia GN=nabp PE=2 SV=1
          Length = 288

 Score = 44.3 bits (103), Expect = 0.005
 Identities = 19/40 (47%), Positives = 28/40 (70%)
 Frame = -2

Query: 560 KEELPSCADDNSELVQVSGESGLVEPALVQVLTRLRTNLF 441
           KE LP  A ++ E+VQ++G+  +   AL+QV TRL+TN F
Sbjct: 220 KENLPKVASEDDEMVQITGDLDVARNALIQVTTRLKTNFF 259


>tr|A9RYT2|A9RYT2_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_31719 PE=4 SV=1
          Length = 427

 Score = 43.5 bits (101), Expect = 0.008
 Identities = 20/40 (50%), Positives = 27/40 (67%)
 Frame = -2

Query: 560 KEELPSCADDNSELVQVSGESGLVEPALVQVLTRLRTNLF 441
           K+ LP CA D  ELVQ+ G++ +   AL QV++RLR N F
Sbjct: 383 KDTLPRCALDTDELVQIVGDTTVAREALFQVISRLRNNAF 422



 Score = 36.2 bits (82), Expect = 1.2
 Identities = 17/38 (44%), Positives = 25/38 (65%)
 Frame = -2

Query: 560 KEELPSCADDNSELVQVSGESGLVEPALVQVLTRLRTN 447
           K++LP CA    ELVQVSG+   ++ AL+ +  RL+ N
Sbjct: 146 KDQLPGCALPTDELVQVSGDVSTLKKALLFISARLQEN 183