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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916954
Clone id YMU001_000094_A01
Library
Length 362
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000094_A01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GATGCAGATTATACAGATGTGCCGATGTCGAGGTACATGCATAATGATGCATGTGGGTGA
CTGCAAGTTAGCCCTTTGATTGACCAGCATGCACTTACTTCTGTATGTTCACTGTGATGA
AAATTCTCTGTATAACGGCCGCCAAAAATCTTGAAATGCTCCAATTAGCCATGACAACTG
ATGATCGGTCTGCTTTGGGCACATTCCGAGTTTTTGGGAAAGACAAGTCTTCTTGCGTAT
CCTCATGAAGTGCATCTTCGCCTGCACGCTTGCACAGTATACATAGCCACATTGAAGTTG
AAAGGACTAATGCAGAAAAGCTATCCAACACATGCAGACGATTGAACGCTCCCTGCCGAG
AA
■■Homology search results ■■ -
sp_hit_id Q12212
Definition sp|Q12212|SIA1_YEAST Protein SIA1 OS=Saccharomyces cerevisiae
Align length 27
Score (bit) 30.8
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916954|Adiantum capillus-veneris mRNA, clone:
YMU001_000094_A01.
         (362 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q12212|SIA1_YEAST Protein SIA1 OS=Saccharomyces cerevisiae GN...    31   2.2  
sp|Q6DFC8|ZN395_XENLA Zinc finger protein 395 OS=Xenopus laevis ...    30   2.9  

>sp|Q12212|SIA1_YEAST Protein SIA1 OS=Saccharomyces cerevisiae
           GN=SIA1 PE=2 SV=1
          Length = 622

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -1

Query: 119 HHSEHTEVSACWSIKGLTCSHPHASLC 39
           H+    ++ + W+IKG++C H H + C
Sbjct: 530 HYKSFLDILSLWNIKGVSCGHEHNNDC 556


>sp|Q6DFC8|ZN395_XENLA Zinc finger protein 395 OS=Xenopus laevis
           GN=znf395 PE=2 SV=1
          Length = 498

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 20/62 (32%), Positives = 30/62 (48%)
 Frame = -2

Query: 334 HVLDSFSALVLSTSMWLCILCKRAGEDALHEDTQEDLSFPKTRNVPKADRSSVVMANWSI 155
           HV D     VL   + LC    R  ED    +TQ+ LS P  +++P +  ++   A  S+
Sbjct: 100 HVDDEVKLFVLELGLHLC----RKMEDVRLAETQKPLSSPIEQSLPTSPGATSTSAQRSV 155

Query: 154 SR 149
           SR
Sbjct: 156 SR 157
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916954|Adiantum capillus-veneris mRNA, clone:
YMU001_000094_A01.
         (362 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******