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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916955
Clone id YMU001_000094_A02
Library
Length 171
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000094_A02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ATGTGGATTCTCTGATAAAGAACTGGCCTAGTTCCATCAGAAGGAAGACCTTGTGCTTCC
AGTTCTTCTTATAGTTCTGAAACCAGCATGTTGCTGGCCGATTAAGGCTTGCGGACTTGC
GGTACTGATTCTGCAAGCATATCTTTCCGAAGCTTCTCCATGATCATCATG
■■Homology search results ■■ -
sp_hit_id P59759
Definition sp|P59759|MKL2_MOUSE MKL/myocardin-like protein 2 OS=Mus musculus
Align length 34
Score (bit) 32.7
E-value 0.58
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916955|Adiantum capillus-veneris mRNA, clone:
YMU001_000094_A02.
         (171 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P59759|MKL2_MOUSE MKL/myocardin-like protein 2 OS=Mus musculu...    33   0.58 
sp|Q9ULH7|MKL2_HUMAN MKL/myocardin-like protein 2 OS=Homo sapien...    33   0.58 
sp|A4QJI9|RPOC2_AETGR DNA-directed RNA polymerase subunit beta''...    29   6.4  
sp|A4QJA5|RPOC2_AETCO DNA-directed RNA polymerase subunit beta''...    29   6.4  
sp|Q8AYC1|MRTFB_XENLA Myocardin-related transcription factor B O...    29   8.3  

>sp|P59759|MKL2_MOUSE MKL/myocardin-like protein 2 OS=Mus musculus
           GN=Mkl2 PE=1 SV=1
          Length = 1080

 Score = 32.7 bits (73), Expect = 0.58
 Identities = 16/34 (47%), Positives = 23/34 (67%)
 Frame = -2

Query: 107 P*SASNMLVSEL*EELEAQGLPSDGTRPVLYQRI 6
           P S  ++ VSEL  EL+ +GLP  GT+P L +R+
Sbjct: 380 PSSLDDLKVSELKTELKLRGLPVSGTKPDLIERL 413


>sp|Q9ULH7|MKL2_HUMAN MKL/myocardin-like protein 2 OS=Homo sapiens
           GN=MKL2 PE=1 SV=3
          Length = 1088

 Score = 32.7 bits (73), Expect = 0.58
 Identities = 16/34 (47%), Positives = 23/34 (67%)
 Frame = -2

Query: 107 P*SASNMLVSEL*EELEAQGLPSDGTRPVLYQRI 6
           P S  ++ VSEL  EL+ +GLP  GT+P L +R+
Sbjct: 386 PSSLDDLKVSELKTELKLRGLPVSGTKPDLIERL 419


>sp|A4QJI9|RPOC2_AETGR DNA-directed RNA polymerase subunit beta''
            OS=Aethionema grandiflora GN=rpoC2 PE=3 SV=1
          Length = 1383

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = -3

Query: 148  GKICLQNQYRKSASLNRPATCWF---QNYKKNWKHKVFLLMELGQFF 17
            G+IC ++ Y  +  LN     W+   QNY  N+  ++  ++ LGQFF
Sbjct: 1025 GRICNRDPY-SNVVLNPFKLNWYFLHQNYHHNYCEEISTIISLGQFF 1070


>sp|A4QJA5|RPOC2_AETCO DNA-directed RNA polymerase subunit beta''
            OS=Aethionema cordifolium GN=rpoC2 PE=3 SV=1
          Length = 1385

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = -3

Query: 148  GKICLQNQYRKSASLNRPATCWF---QNYKKNWKHKVFLLMELGQFF 17
            G+IC ++ Y  +  LN     W+   QNY  N+  ++  L+ LGQFF
Sbjct: 1027 GRICNRDPY-SNVVLNPFKLNWYFLHQNYHHNYCEEMSTLISLGQFF 1072


>sp|Q8AYC1|MRTFB_XENLA Myocardin-related transcription factor B
           OS=Xenopus laevis GN=mrtfb PE=2 SV=1
          Length = 1067

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = -2

Query: 107 P*SASNMLVSEL*EELEAQGLPSDGTRPVLYQRI 6
           P S  +M V+EL  EL+ +GLP  GT+  L +R+
Sbjct: 387 PSSLDDMKVAELKMELKLRGLPVSGTKMDLIERL 420
tr_hit_id A9RZV2
Definition tr|A9RZV2|A9RZV2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 53
Score (bit) 68.9
E-value 1.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916955|Adiantum capillus-veneris mRNA, clone:
YMU001_000094_A02.
         (171 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RZV2|A9RZV2_PHYPA Predicted protein OS=Physcomitrella paten...    69   1e-10
tr|Q9M8Y2|Q9M8Y2_ARATH T6K12.12 protein OS=Arabidopsis thaliana ...    57   6e-07
tr|A7PZ38|A7PZ38_VITVI Chromosome chr4 scaffold_39, whole genome...    56   8e-07
tr|Q8LNP4|Q8LNP4_ORYSJ Putative chloroplast RNA processing prote...    56   1e-06
tr|Q8H902|Q8H902_ORYSJ Putative DNA binding domain containing pr...    56   1e-06
tr|B8BHB8|B8BHB8_ORYSI Putative uncharacterized protein OS=Oryza...    56   1e-06
tr|A3C5H7|A3C5H7_ORYSJ Putative uncharacterized protein OS=Oryza...    56   1e-06
tr|Q5DTZ3|Q5DTZ3_MOUSE MKIAA1243 protein (Fragment) OS=Mus muscu...    33   9.2  
tr|A3KMF2|A3KMF2_MOUSE Mkl2 protein (Fragment) OS=Mus musculus G...    33   9.2  
tr|B4DGT8|B4DGT8_HUMAN Putative uncharacterized protein OS=Homo ...    33   9.2  

>tr|A9RZV2|A9RZV2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_207299 PE=4 SV=1
          Length = 803

 Score = 68.9 bits (167), Expect = 1e-10
 Identities = 33/53 (62%), Positives = 44/53 (83%)
 Frame = -2

Query: 164 IMEKLRKDMLAESVPQVRKP*SASNMLVSEL*EELEAQGLPSDGTRPVLYQRI 6
           ++E+L+KD   +   Q+RKP +AS MLVSEL +ELEAQGLP++GTRPVLYQR+
Sbjct: 444 VIERLKKDTRGDVGYQIRKPKAASKMLVSELKDELEAQGLPTEGTRPVLYQRV 496


>tr|Q9M8Y2|Q9M8Y2_ARATH T6K12.12 protein OS=Arabidopsis thaliana
           GN=At3g04260 PE=4 SV=1
          Length = 913

 Score = 56.6 bits (135), Expect = 6e-07
 Identities = 31/55 (56%), Positives = 41/55 (74%)
 Frame = -2

Query: 170 MMIMEKLRKDMLAESVPQVRKP*SASNMLVSEL*EELEAQGLPSDGTRPVLYQRI 6
           M ++E+LR  +   ++  + KP +AS M+VSEL EELEAQGLP DGTR VLYQR+
Sbjct: 514 MRVVERLRNIIKGPAL-NLLKPKAASKMVVSELKEELEAQGLPIDGTRNVLYQRV 567


>tr|A7PZ38|A7PZ38_VITVI Chromosome chr4 scaffold_39, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00026730001
           PE=4 SV=1
          Length = 818

 Score = 56.2 bits (134), Expect = 8e-07
 Identities = 31/53 (58%), Positives = 39/53 (73%)
 Frame = -2

Query: 164 IMEKLRKDMLAESVPQVRKP*SASNMLVSEL*EELEAQGLPSDGTRPVLYQRI 6
           + E+LRK ++        KP +AS M+VSEL EELEAQGLP+DGTR VLYQR+
Sbjct: 507 VEERLRK-IIKGPDQNALKPKAASKMIVSELKEELEAQGLPTDGTRNVLYQRV 558


>tr|Q8LNP4|Q8LNP4_ORYSJ Putative chloroplast RNA processing protein
           OS=Oryza sativa subsp. japonica GN=OSJNBa0042E19.39 PE=4
           SV=1
          Length = 730

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 30/53 (56%), Positives = 40/53 (75%)
 Frame = -2

Query: 164 IMEKLRKDMLAESVPQVRKP*SASNMLVSEL*EELEAQGLPSDGTRPVLYQRI 6
           ++E+L+K ++      V KP +AS M+VSEL  ELEAQGLP+DGTR VLYQR+
Sbjct: 523 VIERLKK-LVVGPKKNVVKPKAASKMVVSELKTELEAQGLPTDGTRQVLYQRV 574


>tr|Q8H902|Q8H902_ORYSJ Putative DNA binding domain containing
           protein (SAP domain containing protein, expressed)
           OS=Oryza sativa subsp. japonica GN=OSJNBa0071K18.11 PE=4
           SV=1
          Length = 898

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 30/53 (56%), Positives = 40/53 (75%)
 Frame = -2

Query: 164 IMEKLRKDMLAESVPQVRKP*SASNMLVSEL*EELEAQGLPSDGTRPVLYQRI 6
           ++E+L+K ++      V KP +AS M+VSEL  ELEAQGLP+DGTR VLYQR+
Sbjct: 523 VIERLKK-LVVGPKKNVVKPKAASKMVVSELKTELEAQGLPTDGTRQVLYQRV 574


>tr|B8BHB8|B8BHB8_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_33922 PE=4 SV=1
          Length = 836

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 30/53 (56%), Positives = 40/53 (75%)
 Frame = -2

Query: 164 IMEKLRKDMLAESVPQVRKP*SASNMLVSEL*EELEAQGLPSDGTRPVLYQRI 6
           ++E+L+K ++      V KP +AS M+VSEL  ELEAQGLP+DGTR VLYQR+
Sbjct: 460 VIERLKK-LVVGPKKNVVKPKAASKMVVSELKTELEAQGLPTDGTRQVLYQRV 511


>tr|A3C5H7|A3C5H7_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_030549 PE=4 SV=1
          Length = 764

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 30/53 (56%), Positives = 40/53 (75%)
 Frame = -2

Query: 164 IMEKLRKDMLAESVPQVRKP*SASNMLVSEL*EELEAQGLPSDGTRPVLYQRI 6
           ++E+L+K ++      V KP +AS M+VSEL  ELEAQGLP+DGTR VLYQR+
Sbjct: 389 VIERLKK-LVVGPKKNVVKPKAASKMVVSELKTELEAQGLPTDGTRQVLYQRV 440


>tr|Q5DTZ3|Q5DTZ3_MOUSE MKIAA1243 protein (Fragment) OS=Mus musculus
           GN=Mkl2 PE=2 SV=1
          Length = 1080

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 16/34 (47%), Positives = 23/34 (67%)
 Frame = -2

Query: 107 P*SASNMLVSEL*EELEAQGLPSDGTRPVLYQRI 6
           P S  ++ VSEL  EL+ +GLP  GT+P L +R+
Sbjct: 380 PSSLDDLKVSELKTELKLRGLPVSGTKPDLIERL 413


>tr|A3KMF2|A3KMF2_MOUSE Mkl2 protein (Fragment) OS=Mus musculus
           GN=Mkl2 PE=2 SV=1
          Length = 1079

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 16/34 (47%), Positives = 23/34 (67%)
 Frame = -2

Query: 107 P*SASNMLVSEL*EELEAQGLPSDGTRPVLYQRI 6
           P S  ++ VSEL  EL+ +GLP  GT+P L +R+
Sbjct: 379 PSSLDDLKVSELKTELKLRGLPVSGTKPDLIERL 412


>tr|B4DGT8|B4DGT8_HUMAN Putative uncharacterized protein OS=Homo
           sapiens GN=MKL2 PE=2 SV=1
          Length = 1099

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 16/34 (47%), Positives = 23/34 (67%)
 Frame = -2

Query: 107 P*SASNMLVSEL*EELEAQGLPSDGTRPVLYQRI 6
           P S  ++ VSEL  EL+ +GLP  GT+P L +R+
Sbjct: 397 PSSLDDLKVSELKTELKLRGLPVSGTKPDLIERL 430