BP916957 |
Clone id |
YMU001_000094_A05 |
Library |
YMU01 |
Length |
475 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000094_A05. |
Accession |
BP916957 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL2872Contig1 |
Sequence |
GGAACTGTGTGGTCACGTGTGTACATTGTCAAGCAGTGCTTTGGAGTGAGGACTATGCGA TGATTGGGCTACAATCAAGGTTCCGGGGTATAGTACCACTCTCCTTCCTTGGACACATCT TGTCCTTCAAATCAGGGTTCCTAGTTATGGTACTCCCCTCCTACCTTCATGACTTGAGGT ATCTCAATTTGTCGTTTTATCTCAAGGGCACCAGATTAGTTATTTTATTATACGGCACCT TGCTTGCCATGATCCACAGACTTTTGTCTTGTCTCCTCAGAAAGTAAAGCTATCGACTAC ATCATCAAATTGCTACTCCTTGCAGGATAGCACTGCAGTATTTGTGAAGCTGATCGGTAT TCCTCACTGTCAAAACAGGCTAAATGTCAATAGTCTGCCTTTTCGGGCTTCAAAGGTAGC AAATCGGGCAGTCTAAATCTCTTTGGTAGCTGGAAAACTTTGTAAGTATATAGCT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P0A3X6 |
Definition |
sp|P0A3X6|CAPP_THEVL Phosphoenolpyruvate carboxylase OS=Thermosynechococcus vulcanus |
Align length |
75 |
Score (bit) |
32.3 |
E-value |
1.1 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A0SHP0 |
Definition |
tr|A0SHP0|A0SHP0_ORYSJ Chloroplast nucleoid DNA-binding protein (Fragment) OS=Oryza sativa subsp. japonica |
Align length |
78 |
Score (bit) |
34.7 |
E-value |
2.4 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP916957|Adiantum capillus-veneris mRNA, clone: YMU001_000094_A05. (475 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A0SHP0|A0SHP0_ORYSJ Chloroplast nucleoid DNA-binding protein ... 35 2.4 tr|Q1WNV4|Q1WNV4_9SALA NADH-ubiquinone oxidoreductase chain 2 OS... 34 3.2 tr|Q1WNU9|Q1WNU9_9SALA NADH-ubiquinone oxidoreductase chain 2 OS... 34 4.2 tr|B7BAF5|B7BAF5_9PORP Putative uncharacterized protein OS=Parab... 33 5.4 tr|A7AFH2|A7AFH2_9PORP Putative uncharacterized protein OS=Parab... 33 5.4 tr|Q1WNV3|Q1WNV3_9SALA NADH-ubiquinone oxidoreductase chain 2 OS... 33 7.1 tr|Q1WNU4|Q1WNU4_9SALA NADH-ubiquinone oxidoreductase chain 2 OS... 33 7.1 tr|Q2R8V2|Q2R8V2_ORYSJ Eukaryotic aspartyl protease family prote... 33 9.2 tr|A3C9R0|A3C9R0_ORYSJ Putative uncharacterized protein OS=Oryza... 33 9.2 tr|A2ZCM6|A2ZCM6_ORYSI Putative uncharacterized protein OS=Oryza... 33 9.2 tr|A0SHQ4|A0SHQ4_ORYRU Chloroplast nucleoid DNA-binding protein ... 33 9.2 tr|A0SHQ0|A0SHQ0_ORYRU Chloroplast nucleoid DNA-binding protein ... 33 9.2 tr|A0SHP9|A0SHP9_ORYRU Chloroplast nucleoid DNA-binding protein ... 33 9.2 tr|A0SHP8|A0SHP8_ORYRU Chloroplast nucleoid DNA-binding protein ... 33 9.2 tr|A0SHP7|A0SHP7_ORYRU Chloroplast nucleoid DNA-binding protein ... 33 9.2 tr|A0SHP6|A0SHP6_ORYRU Chloroplast nucleoid DNA-binding protein ... 33 9.2 tr|A0SHP5|A0SHP5_ORYSI Chloroplast nucleoid DNA-binding protein ... 33 9.2 tr|A0SHP4|A0SHP4_ORYSI Chloroplast nucleoid DNA-binding protein ... 33 9.2 tr|A0SHP3|A0SHP3_ORYSI Chloroplast nucleoid DNA-binding protein ... 33 9.2 tr|A0SHP2|A0SHP2_ORYSI Chloroplast nucleoid DNA-binding protein ... 33 9.2 tr|A0SHP1|A0SHP1_ORYSJ Chloroplast nucleoid DNA-binding protein ... 33 9.2 tr|A0SHN9|A0SHN9_ORYSJ Chloroplast nucleoid DNA-binding protein ... 33 9.2 tr|A0SHN8|A0SHN8_ORYSJ Chloroplast nucleoid DNA-binding protein ... 33 9.2 tr|A0SHN7|A0SHN7_ORYNI Chloroplast nucleoid DNA-binding protein ... 33 9.2 tr|A0SHN5|A0SHN5_9ORYZ Chloroplast nucleoid DNA-binding protein ... 33 9.2 tr|A0SHN4|A0SHN4_9ORYZ Chloroplast nucleoid DNA-binding protein ... 33 9.2 tr|A0SHN1|A0SHN1_9ORYZ Chloroplast nucleoid DNA-binding protein ... 33 9.2 tr|A0SHN0|A0SHN0_9ORYZ Chloroplast nucleoid DNA-binding protein ... 33 9.2 tr|A0SHM9|A0SHM9_9ORYZ Chloroplast nucleoid DNA-binding protein ... 33 9.2
>tr|A0SHP0|A0SHP0_ORYSJ Chloroplast nucleoid DNA-binding protein (Fragment) OS=Oryza sativa subsp. japonica PE=4 SV=1 Length = 321
Score = 34.7 bits (78), Expect = 2.4 Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 1/78 (1%) Frame = +2
Query: 182 SQFVVLSQGHQISYFIIRHLACH-DPQTFVLSPQKVKLSTTSSNCYSLQDSTAVFVKLIG 358 +Q V + G IS+ CH +P+TF L + S+ C + T++ + Sbjct: 13 TQIVEIDTGSSISWVFCECDGCHTNPRTF--------LQSRSTTCAKVSCGTSMCLLGGS 64
Query: 359 IPHCQNRLNVNSLPFRAS 412 PHCQ+ N PFR S Sbjct: 65 DPHCQDSENYPDCPFRVS 82
>tr|Q1WNV4|Q1WNV4_9SALA NADH-ubiquinone oxidoreductase chain 2 OS=Plethodon electromorphus GN=ND2 PE=3 SV=1 Length = 346
Score = 34.3 bits (77), Expect = 3.2 Identities = 22/58 (37%), Positives = 32/58 (55%) Frame = +3
Query: 72 QSRFRGIVPLSFLGHILSFKSGFLVMVLPSYLHDLRYLNLSFYLKGTRLVILLYGTLL 245 QS R I+ S + H+ G++++V+P YL L LNL YL T + L+ TLL Sbjct: 172 QSHLRKIMAFSSIAHL-----GWMIIVVP-YLPSLTLLNLMMYLLMTSSIFLMMMTLL 223
>tr|Q1WNU9|Q1WNU9_9SALA NADH-ubiquinone oxidoreductase chain 2 OS=Plethodon richmondi GN=ND2 PE=3 SV=1 Length = 346
Score = 33.9 bits (76), Expect = 4.2 Identities = 22/58 (37%), Positives = 32/58 (55%) Frame = +3
Query: 72 QSRFRGIVPLSFLGHILSFKSGFLVMVLPSYLHDLRYLNLSFYLKGTRLVILLYGTLL 245 QS R I+ S + H+ G++++V+P YL L LNL YL T + L+ TLL Sbjct: 172 QSHLRKIMAFSSIAHL-----GWMIIVVP-YLPSLTLLNLLVYLMMTSSIFLMMMTLL 223
>tr|B7BAF5|B7BAF5_9PORP Putative uncharacterized protein OS=Parabacteroides johnsonii DSM 18315 GN=PRABACTJOHN_02012 PE=4 SV=1 Length = 609
Score = 33.5 bits (75), Expect = 5.4 Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 7/76 (9%) Frame = +2
Query: 227 IIRHLACHDPQTFVLSPQKVKLSTTSSNCYSLQDSTAVFVKLI-------GIPHCQNRLN 385 I+ L DP+TF+ S + LS T S ++ A V I GI +C +R + Sbjct: 182 ILNQLKLRDPKTFISSFDRPNLSLTIRRGLSKKEKIAAIVHFINRHHRQSGIIYCMSRNS 241
Query: 386 VNSLPFRASKVANRAV 433 SL S+ + RAV Sbjct: 242 TESLVEELSEYSIRAV 257
>tr|A7AFH2|A7AFH2_9PORP Putative uncharacterized protein OS=Parabacteroides merdae ATCC 43184 GN=PARMER_02162 PE=4 SV=1 Length = 621
Score = 33.5 bits (75), Expect = 5.4 Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 7/76 (9%) Frame = +2
Query: 227 IIRHLACHDPQTFVLSPQKVKLSTTSSNCYSLQDSTAVFVKLI-------GIPHCQNRLN 385 I+ L DP+TF+ S + LS T S ++ A V I GI +C +R + Sbjct: 194 ILNQLKLRDPKTFISSFDRPNLSLTIRRGLSKKEKIAAIVHFINRHHRQSGIIYCMSRNS 253
Query: 386 VNSLPFRASKVANRAV 433 SL S+ + RAV Sbjct: 254 TESLVEELSEYSIRAV 269
>tr|Q1WNV3|Q1WNV3_9SALA NADH-ubiquinone oxidoreductase chain 2 OS=Plethodon hoffmani GN=ND2 PE=3 SV=1 Length = 346
Score = 33.1 bits (74), Expect = 7.1 Identities = 21/58 (36%), Positives = 32/58 (55%) Frame = +3
Query: 72 QSRFRGIVPLSFLGHILSFKSGFLVMVLPSYLHDLRYLNLSFYLKGTRLVILLYGTLL 245 QS R I+ S + H+ G++++V+P YL L LNL Y+ T + L+ TLL Sbjct: 172 QSHLRKIMAFSSIAHL-----GWMIIVMP-YLPSLTLLNLLVYMLMTTSIFLMMMTLL 223
>tr|Q1WNU4|Q1WNU4_9SALA NADH-ubiquinone oxidoreductase chain 2 OS=Plethodon virginia GN=ND2 PE=3 SV=1 Length = 346
Score = 33.1 bits (74), Expect = 7.1 Identities = 21/58 (36%), Positives = 32/58 (55%) Frame = +3
Query: 72 QSRFRGIVPLSFLGHILSFKSGFLVMVLPSYLHDLRYLNLSFYLKGTRLVILLYGTLL 245 QS R I+ S + H+ G++++V+P YL L LNL Y+ T + L+ TLL Sbjct: 172 QSHLRKIMAFSSIAHL-----GWMIIVMP-YLPSLTMLNLLVYMLMTTSIFLMMMTLL 223
>tr|Q2R8V2|Q2R8V2_ORYSJ Eukaryotic aspartyl protease family protein, expressed OS=Oryza sativa subsp. japonica GN=Os11g0215400 PE=4 SV=1 Length = 428
Score = 32.7 bits (73), Expect = 9.2 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 1/78 (1%) Frame = +2
Query: 182 SQFVVLSQGHQISYFIIRHLACH-DPQTFVLSPQKVKLSTTSSNCYSLQDSTAVFVKLIG 358 +Q V + G S+ CH +P+TF L + S+ C + T++ + Sbjct: 94 TQIVEIDTGSSTSWVFCECDGCHTNPRTF--------LQSRSTTCAKVSCGTSMCLLGGS 145
Query: 359 IPHCQNRLNVNSLPFRAS 412 PHCQ+ N PFR S Sbjct: 146 DPHCQDSENYPDCPFRVS 163
>tr|A3C9R0|A3C9R0_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_032032 PE=4 SV=1 Length = 453
Score = 32.7 bits (73), Expect = 9.2 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 1/78 (1%) Frame = +2
Query: 182 SQFVVLSQGHQISYFIIRHLACH-DPQTFVLSPQKVKLSTTSSNCYSLQDSTAVFVKLIG 358 +Q V + G S+ CH +P+TF L + S+ C + T++ + Sbjct: 94 TQIVEIDTGSSTSWVFCECDGCHTNPRTF--------LQSRSTTCAKVSCGTSMCLLGGS 145
Query: 359 IPHCQNRLNVNSLPFRAS 412 PHCQ+ N PFR S Sbjct: 146 DPHCQDSENYPDCPFRVS 163
>tr|A2ZCM6|A2ZCM6_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_35532 PE=4 SV=1 Length = 428
Score = 32.7 bits (73), Expect = 9.2 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 1/78 (1%) Frame = +2
Query: 182 SQFVVLSQGHQISYFIIRHLACH-DPQTFVLSPQKVKLSTTSSNCYSLQDSTAVFVKLIG 358 +Q V + G S+ CH +P+TF L + S+ C + T++ + Sbjct: 94 TQIVEIDTGSSTSWVFCECDGCHTNPRTF--------LQSRSTTCAKVSCGTSMCLLGGS 145
Query: 359 IPHCQNRLNVNSLPFRAS 412 PHCQ+ N PFR S Sbjct: 146 DPHCQDSENYPDCPFRVS 163
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