BP916957
Clone id YMU001_000094_A05
Library
Length 475
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000094_A05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
GGAACTGTGTGGTCACGTGTGTACATTGTCAAGCAGTGCTTTGGAGTGAGGACTATGCGA
TGATTGGGCTACAATCAAGGTTCCGGGGTATAGTACCACTCTCCTTCCTTGGACACATCT
TGTCCTTCAAATCAGGGTTCCTAGTTATGGTACTCCCCTCCTACCTTCATGACTTGAGGT
ATCTCAATTTGTCGTTTTATCTCAAGGGCACCAGATTAGTTATTTTATTATACGGCACCT
TGCTTGCCATGATCCACAGACTTTTGTCTTGTCTCCTCAGAAAGTAAAGCTATCGACTAC
ATCATCAAATTGCTACTCCTTGCAGGATAGCACTGCAGTATTTGTGAAGCTGATCGGTAT
TCCTCACTGTCAAAACAGGCTAAATGTCAATAGTCTGCCTTTTCGGGCTTCAAAGGTAGC
AAATCGGGCAGTCTAAATCTCTTTGGTAGCTGGAAAACTTTGTAAGTATATAGCT
■■Homology search results ■■ -
sp_hit_id P0A3X6
Definition sp|P0A3X6|CAPP_THEVL Phosphoenolpyruvate carboxylase OS=Thermosynechococcus vulcanus
Align length 75
Score (bit) 32.3
E-value 1.1
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916957|Adiantum capillus-veneris mRNA, clone:
YMU001_000094_A05.
(475 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P0A3X6|CAPP_THEVL Phosphoenolpyruvate carboxylase OS=Thermosy... 32 1.1
sp|P0A3X5|CAPP_THEEB Phosphoenolpyruvate carboxylase OS=Thermosy... 32 1.1
sp|Q83QD0|SDAC_SHIFL Serine transporter OS=Shigella flexneri GN=... 29 9.3
sp|P0AAD6|SDAC_ECOLI Serine transporter OS=Escherichia coli (str... 29 9.3
sp|P0AAD7|SDAC_ECO57 Serine transporter OS=Escherichia coli O157... 29 9.3
sp|A1VL96|GLGA_POLNA Glycogen synthase OS=Polaromonas naphthalen... 29 9.3

>sp|P0A3X6|CAPP_THEVL Phosphoenolpyruvate carboxylase
OS=Thermosynechococcus vulcanus GN=ppc PE=3 SV=1
Length = 1011

Score = 32.3 bits (72), Expect = 1.1
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Frame = +2

Query: 194 VLSQGHQISYFI-----IRHLACHDPQTFVLSPQKVKLSTTSSNCYSLQDSTAVFVKLIG 358
++S H++S + + DP T + Q + L T + L+ + AV +L
Sbjct: 574 IISMSHEVSDLLEVLLFAKEAGLFDPATGASTLQAIPLFETVED---LKHAPAVLTQLFS 630

Query: 359 IPHCQNRLNVNSLPF 403
+P C++ L NS PF
Sbjct: 631 LPFCRSYLGSNSTPF 645


>sp|P0A3X5|CAPP_THEEB Phosphoenolpyruvate carboxylase
OS=Thermosynechococcus elongatus (strain BP-1) GN=ppc
PE=3 SV=1
Length = 1011

Score = 32.3 bits (72), Expect = 1.1
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Frame = +2

Query: 194 VLSQGHQISYFI-----IRHLACHDPQTFVLSPQKVKLSTTSSNCYSLQDSTAVFVKLIG 358
++S H++S + + DP T + Q + L T + L+ + AV +L
Sbjct: 574 IISMSHEVSDLLEVLLFAKEAGLFDPATGASTLQAIPLFETVED---LKHAPAVLTQLFS 630

Query: 359 IPHCQNRLNVNSLPF 403
+P C++ L NS PF
Sbjct: 631 LPFCRSYLGSNSTPF 645


>sp|Q83QD0|SDAC_SHIFL Serine transporter OS=Shigella flexneri
GN=sdaC PE=3 SV=1
Length = 429

Score = 29.3 bits (64), Expect = 9.3
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Frame = +3

Query: 102 SFLGHILSFKSGFLVMVLPSY--------LHDLRYLNLSFYLKGTRLVILLYGTLLAMIH 257
SFLGH L + GF MV+ S ++ L + F L T +V L ++L MI
Sbjct: 316 SFLGHYLGAREGFNGMVIKSLRGKGKSIEINKLNRITALFMLVTTWIVATLNPSILGMIE 375

Query: 258 RL 263
L
Sbjct: 376 TL 377


>sp|P0AAD6|SDAC_ECOLI Serine transporter OS=Escherichia coli (strain
K12) GN=sdaC PE=1 SV=1
Length = 429

Score = 29.3 bits (64), Expect = 9.3
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Frame = +3

Query: 102 SFLGHILSFKSGFLVMVLPSY--------LHDLRYLNLSFYLKGTRLVILLYGTLLAMIH 257
SFLGH L + GF MV+ S ++ L + F L T +V L ++L MI
Sbjct: 316 SFLGHYLGAREGFNGMVIKSLRGKGKSIEINKLNRITALFMLVTTWIVATLNPSILGMIE 375

Query: 258 RL 263
L
Sbjct: 376 TL 377


>sp|P0AAD7|SDAC_ECO57 Serine transporter OS=Escherichia coli O157:H7
GN=sdaC PE=2 SV=1
Length = 429

Score = 29.3 bits (64), Expect = 9.3
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Frame = +3

Query: 102 SFLGHILSFKSGFLVMVLPSY--------LHDLRYLNLSFYLKGTRLVILLYGTLLAMIH 257
SFLGH L + GF MV+ S ++ L + F L T +V L ++L MI
Sbjct: 316 SFLGHYLGAREGFNGMVIKSLRGKGKSIEINKLNRITALFMLVTTWIVATLNPSILGMIE 375

Query: 258 RL 263
L
Sbjct: 376 TL 377


>sp|A1VL96|GLGA_POLNA Glycogen synthase OS=Polaromonas
naphthalenivorans (strain CJ2) GN=glgA PE=3 SV=1
Length = 494

Score = 29.3 bits (64), Expect = 9.3
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Frame = +3

Query: 30 QAVLWSEDYAMIGLQSRFRGIVPLSFLGHILSFKSGF-----LVMVLPSYLHDL 176
Q + +D+ ++GL SR V L F G + K+G + V P+Y H++
Sbjct: 172 QGLFDEDDFHLLGLPSRLMVPVGLEFHGQLSFMKAGLKYAHRITTVSPTYAHEI 225


tr_hit_id A0SHP0
Definition tr|A0SHP0|A0SHP0_ORYSJ Chloroplast nucleoid DNA-binding protein (Fragment) OS=Oryza sativa subsp. japonica
Align length 78
Score (bit) 34.7
E-value 2.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916957|Adiantum capillus-veneris mRNA, clone:
YMU001_000094_A05.
(475 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A0SHP0|A0SHP0_ORYSJ Chloroplast nucleoid DNA-binding protein ... 35 2.4
tr|Q1WNV4|Q1WNV4_9SALA NADH-ubiquinone oxidoreductase chain 2 OS... 34 3.2
tr|Q1WNU9|Q1WNU9_9SALA NADH-ubiquinone oxidoreductase chain 2 OS... 34 4.2
tr|B7BAF5|B7BAF5_9PORP Putative uncharacterized protein OS=Parab... 33 5.4
tr|A7AFH2|A7AFH2_9PORP Putative uncharacterized protein OS=Parab... 33 5.4
tr|Q1WNV3|Q1WNV3_9SALA NADH-ubiquinone oxidoreductase chain 2 OS... 33 7.1
tr|Q1WNU4|Q1WNU4_9SALA NADH-ubiquinone oxidoreductase chain 2 OS... 33 7.1
tr|Q2R8V2|Q2R8V2_ORYSJ Eukaryotic aspartyl protease family prote... 33 9.2
tr|A3C9R0|A3C9R0_ORYSJ Putative uncharacterized protein OS=Oryza... 33 9.2
tr|A2ZCM6|A2ZCM6_ORYSI Putative uncharacterized protein OS=Oryza... 33 9.2
tr|A0SHQ4|A0SHQ4_ORYRU Chloroplast nucleoid DNA-binding protein ... 33 9.2
tr|A0SHQ0|A0SHQ0_ORYRU Chloroplast nucleoid DNA-binding protein ... 33 9.2
tr|A0SHP9|A0SHP9_ORYRU Chloroplast nucleoid DNA-binding protein ... 33 9.2
tr|A0SHP8|A0SHP8_ORYRU Chloroplast nucleoid DNA-binding protein ... 33 9.2
tr|A0SHP7|A0SHP7_ORYRU Chloroplast nucleoid DNA-binding protein ... 33 9.2
tr|A0SHP6|A0SHP6_ORYRU Chloroplast nucleoid DNA-binding protein ... 33 9.2
tr|A0SHP5|A0SHP5_ORYSI Chloroplast nucleoid DNA-binding protein ... 33 9.2
tr|A0SHP4|A0SHP4_ORYSI Chloroplast nucleoid DNA-binding protein ... 33 9.2
tr|A0SHP3|A0SHP3_ORYSI Chloroplast nucleoid DNA-binding protein ... 33 9.2
tr|A0SHP2|A0SHP2_ORYSI Chloroplast nucleoid DNA-binding protein ... 33 9.2
tr|A0SHP1|A0SHP1_ORYSJ Chloroplast nucleoid DNA-binding protein ... 33 9.2
tr|A0SHN9|A0SHN9_ORYSJ Chloroplast nucleoid DNA-binding protein ... 33 9.2
tr|A0SHN8|A0SHN8_ORYSJ Chloroplast nucleoid DNA-binding protein ... 33 9.2
tr|A0SHN7|A0SHN7_ORYNI Chloroplast nucleoid DNA-binding protein ... 33 9.2
tr|A0SHN5|A0SHN5_9ORYZ Chloroplast nucleoid DNA-binding protein ... 33 9.2
tr|A0SHN4|A0SHN4_9ORYZ Chloroplast nucleoid DNA-binding protein ... 33 9.2
tr|A0SHN1|A0SHN1_9ORYZ Chloroplast nucleoid DNA-binding protein ... 33 9.2
tr|A0SHN0|A0SHN0_9ORYZ Chloroplast nucleoid DNA-binding protein ... 33 9.2
tr|A0SHM9|A0SHM9_9ORYZ Chloroplast nucleoid DNA-binding protein ... 33 9.2

>tr|A0SHP0|A0SHP0_ORYSJ Chloroplast nucleoid DNA-binding protein
(Fragment) OS=Oryza sativa subsp. japonica PE=4 SV=1
Length = 321

Score = 34.7 bits (78), Expect = 2.4
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Frame = +2

Query: 182 SQFVVLSQGHQISYFIIRHLACH-DPQTFVLSPQKVKLSTTSSNCYSLQDSTAVFVKLIG 358
+Q V + G IS+ CH +P+TF L + S+ C + T++ +
Sbjct: 13 TQIVEIDTGSSISWVFCECDGCHTNPRTF--------LQSRSTTCAKVSCGTSMCLLGGS 64

Query: 359 IPHCQNRLNVNSLPFRAS 412
PHCQ+ N PFR S
Sbjct: 65 DPHCQDSENYPDCPFRVS 82


>tr|Q1WNV4|Q1WNV4_9SALA NADH-ubiquinone oxidoreductase chain 2
OS=Plethodon electromorphus GN=ND2 PE=3 SV=1
Length = 346

Score = 34.3 bits (77), Expect = 3.2
Identities = 22/58 (37%), Positives = 32/58 (55%)
Frame = +3

Query: 72 QSRFRGIVPLSFLGHILSFKSGFLVMVLPSYLHDLRYLNLSFYLKGTRLVILLYGTLL 245
QS R I+ S + H+ G++++V+P YL L LNL YL T + L+ TLL
Sbjct: 172 QSHLRKIMAFSSIAHL-----GWMIIVVP-YLPSLTLLNLMMYLLMTSSIFLMMMTLL 223


>tr|Q1WNU9|Q1WNU9_9SALA NADH-ubiquinone oxidoreductase chain 2
OS=Plethodon richmondi GN=ND2 PE=3 SV=1
Length = 346

Score = 33.9 bits (76), Expect = 4.2
Identities = 22/58 (37%), Positives = 32/58 (55%)
Frame = +3

Query: 72 QSRFRGIVPLSFLGHILSFKSGFLVMVLPSYLHDLRYLNLSFYLKGTRLVILLYGTLL 245
QS R I+ S + H+ G++++V+P YL L LNL YL T + L+ TLL
Sbjct: 172 QSHLRKIMAFSSIAHL-----GWMIIVVP-YLPSLTLLNLLVYLMMTSSIFLMMMTLL 223


>tr|B7BAF5|B7BAF5_9PORP Putative uncharacterized protein
OS=Parabacteroides johnsonii DSM 18315
GN=PRABACTJOHN_02012 PE=4 SV=1
Length = 609

Score = 33.5 bits (75), Expect = 5.4
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Frame = +2

Query: 227 IIRHLACHDPQTFVLSPQKVKLSTTSSNCYSLQDSTAVFVKLI-------GIPHCQNRLN 385
I+ L DP+TF+ S + LS T S ++ A V I GI +C +R +
Sbjct: 182 ILNQLKLRDPKTFISSFDRPNLSLTIRRGLSKKEKIAAIVHFINRHHRQSGIIYCMSRNS 241

Query: 386 VNSLPFRASKVANRAV 433
SL S+ + RAV
Sbjct: 242 TESLVEELSEYSIRAV 257


>tr|A7AFH2|A7AFH2_9PORP Putative uncharacterized protein
OS=Parabacteroides merdae ATCC 43184 GN=PARMER_02162
PE=4 SV=1
Length = 621

Score = 33.5 bits (75), Expect = 5.4
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Frame = +2

Query: 227 IIRHLACHDPQTFVLSPQKVKLSTTSSNCYSLQDSTAVFVKLI-------GIPHCQNRLN 385
I+ L DP+TF+ S + LS T S ++ A V I GI +C +R +
Sbjct: 194 ILNQLKLRDPKTFISSFDRPNLSLTIRRGLSKKEKIAAIVHFINRHHRQSGIIYCMSRNS 253

Query: 386 VNSLPFRASKVANRAV 433
SL S+ + RAV
Sbjct: 254 TESLVEELSEYSIRAV 269


>tr|Q1WNV3|Q1WNV3_9SALA NADH-ubiquinone oxidoreductase chain 2
OS=Plethodon hoffmani GN=ND2 PE=3 SV=1
Length = 346

Score = 33.1 bits (74), Expect = 7.1
Identities = 21/58 (36%), Positives = 32/58 (55%)
Frame = +3

Query: 72 QSRFRGIVPLSFLGHILSFKSGFLVMVLPSYLHDLRYLNLSFYLKGTRLVILLYGTLL 245
QS R I+ S + H+ G++++V+P YL L LNL Y+ T + L+ TLL
Sbjct: 172 QSHLRKIMAFSSIAHL-----GWMIIVMP-YLPSLTLLNLLVYMLMTTSIFLMMMTLL 223


>tr|Q1WNU4|Q1WNU4_9SALA NADH-ubiquinone oxidoreductase chain 2
OS=Plethodon virginia GN=ND2 PE=3 SV=1
Length = 346

Score = 33.1 bits (74), Expect = 7.1
Identities = 21/58 (36%), Positives = 32/58 (55%)
Frame = +3

Query: 72 QSRFRGIVPLSFLGHILSFKSGFLVMVLPSYLHDLRYLNLSFYLKGTRLVILLYGTLL 245
QS R I+ S + H+ G++++V+P YL L LNL Y+ T + L+ TLL
Sbjct: 172 QSHLRKIMAFSSIAHL-----GWMIIVMP-YLPSLTMLNLLVYMLMTTSIFLMMMTLL 223


>tr|Q2R8V2|Q2R8V2_ORYSJ Eukaryotic aspartyl protease family protein,
expressed OS=Oryza sativa subsp. japonica
GN=Os11g0215400 PE=4 SV=1
Length = 428

Score = 32.7 bits (73), Expect = 9.2
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Frame = +2

Query: 182 SQFVVLSQGHQISYFIIRHLACH-DPQTFVLSPQKVKLSTTSSNCYSLQDSTAVFVKLIG 358
+Q V + G S+ CH +P+TF L + S+ C + T++ +
Sbjct: 94 TQIVEIDTGSSTSWVFCECDGCHTNPRTF--------LQSRSTTCAKVSCGTSMCLLGGS 145

Query: 359 IPHCQNRLNVNSLPFRAS 412
PHCQ+ N PFR S
Sbjct: 146 DPHCQDSENYPDCPFRVS 163


>tr|A3C9R0|A3C9R0_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_032032 PE=4 SV=1
Length = 453

Score = 32.7 bits (73), Expect = 9.2
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Frame = +2

Query: 182 SQFVVLSQGHQISYFIIRHLACH-DPQTFVLSPQKVKLSTTSSNCYSLQDSTAVFVKLIG 358
+Q V + G S+ CH +P+TF L + S+ C + T++ +
Sbjct: 94 TQIVEIDTGSSTSWVFCECDGCHTNPRTF--------LQSRSTTCAKVSCGTSMCLLGGS 145

Query: 359 IPHCQNRLNVNSLPFRAS 412
PHCQ+ N PFR S
Sbjct: 146 DPHCQDSENYPDCPFRVS 163


>tr|A2ZCM6|A2ZCM6_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_35532 PE=4 SV=1
Length = 428

Score = 32.7 bits (73), Expect = 9.2
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Frame = +2

Query: 182 SQFVVLSQGHQISYFIIRHLACH-DPQTFVLSPQKVKLSTTSSNCYSLQDSTAVFVKLIG 358
+Q V + G S+ CH +P+TF L + S+ C + T++ +
Sbjct: 94 TQIVEIDTGSSTSWVFCECDGCHTNPRTF--------LQSRSTTCAKVSCGTSMCLLGGS 145

Query: 359 IPHCQNRLNVNSLPFRAS 412
PHCQ+ N PFR S
Sbjct: 146 DPHCQDSENYPDCPFRVS 163