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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916958
Clone id YMU001_000094_A06
Library
Length 514
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000094_A06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CTTGATCTTATTGCCCTGACACCATCCATCACCACTGCCTGAACTTGCCTAACTTTTTTC
TTGCTTGTTGAATCTTCTTCAGGTTTAAGAGATGGAATGTCAGTAGACTCTATCTCACAC
AAGGTTCTCCTTTTGTGAAGTGAAAAATCAGTCTCTCCAATAGCATTCTCTGACTGGCTC
CAGCTTGCATCATCATGACCGGATTCACTGTCATTATGGCCTCCCAGTAAACATAATTCT
ACCTCATCAGTATCCCCTGGAATACTTTGCATAGCACCTGATGAACCATCTCTGAGAGCC
TTCCTCTCCTCCCTATCCACTAGCCTGACACAACTCGAATGATCTGGGCTTTTAAATCGA
TTTTCTAAGACAGCGCTCCTGTAATGACCCTCCCCATTGACCTGTAAGAACGCGGAATTG
CAGTGATTGTGTGCAACTTTTTTACTGTTCTTTCTAGCTTGGCATGCAATGGCACCTCTC
AAGCTGTTGACTGCTTTACCAACACCTCCCTGCT
■■Homology search results ■■ -
sp_hit_id Q14152
Definition sp|Q14152|EIF3A_HUMAN Eukaryotic translation initiation factor 3 subunit A OS=Homo sapiens
Align length 93
Score (bit) 31.6
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916958|Adiantum capillus-veneris mRNA, clone:
YMU001_000094_A06.
         (514 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q14152|EIF3A_HUMAN Eukaryotic translation initiation factor 3...    32   2.2  
sp|Q8C4S8|DEN2A_MOUSE DENN domain-containing protein 2A OS=Mus m...    31   3.8  
sp|Q55GJ2|IREA_DICDI Probable serine/threonine-protein kinase ir...    31   3.9  
sp|Q5E9F6|VPS72_BOVIN Vacuolar protein sorting-associated protei...    30   6.5  
sp|Q8IN44|TOTA_DROME Protein Turandot A OS=Drosophila melanogast...    30   6.5  
sp|Q5PQJ5|RHG29_RAT Rho GTPase-activating protein 29 OS=Rattus n...    30   8.5  
sp|Q8CGF1|RHG29_MOUSE Rho GTPase-activating protein 29 OS=Mus mu...    30   8.5  
sp|A4J5Z5|HSLU_DESRM ATP-dependent hsl protease ATP-binding subu...    30   8.5  
sp|Q13439|GOGA4_HUMAN Golgin subfamily A member 4 OS=Homo sapien...    30   8.5  

>sp|Q14152|EIF3A_HUMAN Eukaryotic translation initiation factor 3
            subunit A OS=Homo sapiens GN=EIF3A PE=1 SV=1
          Length = 1382

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
 Frame = -3

Query: 314  REERKALRDGSSGAMQSIPGDTDEVELCLLGGHNDSE--SGHDDASWSQSENAIGETDFS 141
            REE + L D S     S  GD D       G   DSE   G  +  W + E   G  +  
Sbjct: 872  REEERRLGDSSLSRKDSRWGDRDSEGTWRKGPEADSEWRRGPPEKEWRRGE---GRDEDR 928

Query: 140  LHKR-----RTLCEIESTDIPSLKPEEDSTSKK 57
             H+R     R L + E  + PSL+P++D   ++
Sbjct: 929  SHRRDEERPRRLGDDEDRE-PSLRPDDDRVPRR 960


>sp|Q8C4S8|DEN2A_MOUSE DENN domain-containing protein 2A OS=Mus
           musculus GN=Dennd2a PE=2 SV=1
          Length = 1000

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 19/35 (54%), Positives = 24/35 (68%)
 Frame = -3

Query: 359 RFKSPDHSSCVRLVDREERKALRDGSSGAMQSIPG 255
           RF+S DH S +R V R E KAL+DGS+G    +PG
Sbjct: 153 RFQS-DHLSVLRQVKRLE-KALKDGSAGLDPQMPG 185


>sp|Q55GJ2|IREA_DICDI Probable serine/threonine-protein kinase ireA
           OS=Dictyostelium discoideum GN=ireA PE=3 SV=1
          Length = 984

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 16/53 (30%), Positives = 35/53 (66%)
 Frame = -1

Query: 298 LSEMVHQVLCKVFQGILMR*NYVYWEAIMTVNPVMMMQAGASQRMLLERLIFH 140
           LS+ ++++  K  +  ++  ++ YWE I+T +PV  + A +S++ +L++L FH
Sbjct: 260 LSQRMYKIYIKKPEKTVVGISHNYWEHILTSSPV-SIYAYSSKKHILKKLDFH 311


>sp|Q5E9F6|VPS72_BOVIN Vacuolar protein sorting-associated protein
           72 homolog OS=Bos taurus GN=VPS72 PE=2 SV=1
          Length = 364

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 6/104 (5%)
 Frame = -3

Query: 323 LVDREERKALRDGSSGAMQSIPGDTDEVELCLLGGHNDSESGHD---DASWSQSENAIGE 153
           L+++EE       + G      GD DE +    G  +D+E   D   D       ++ GE
Sbjct: 20  LLEKEEEDEFYQTTYGGFTEESGD-DEYQ----GDQSDTEDEVDSDFDIDEGDEPSSDGE 74

Query: 152 TDFSLHKRRTLCEIESTDIPSLKPEEDST---SKKKVRQVQAVV 30
            +    KRR + +     + SL+P + ST   S +K R+ +A++
Sbjct: 75  AEEPRRKRRVVTKAYKEPLKSLRPRKVSTPAGSSQKTREEKALL 118


>sp|Q8IN44|TOTA_DROME Protein Turandot A OS=Drosophila melanogaster
           GN=TotA PE=1 SV=1
          Length = 129

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = -3

Query: 236 LCLLGGHNDSESGHDDASWSQSENAIGETDFSLHKRRTLCEIESTDIPSLKPEEDSTSKK 57
           LC+  G++D +   D+   ++      + D  ++  + L +I     PSL PEE  +  K
Sbjct: 18  LCM--GYSDEDREADNLRIAEIIKNAQDDDSKINSTQELLDIYRRLYPSLTPEERESIDK 75

Query: 56  KVRQ-VQAVVMDGV 18
            V +   A+++DGV
Sbjct: 76  FVNEHTDAIIIDGV 89


>sp|Q5PQJ5|RHG29_RAT Rho GTPase-activating protein 29 OS=Rattus
           norvegicus GN=Arhgap29 PE=2 SV=2
          Length = 1266

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
 Frame = -3

Query: 230 LLGGHNDSESGHDDAS--WSQSENAIGETDFSLHKRRTLC-----EIESTDIPSLKPEED 72
           LLG  N+ E    +    W Q +N + ET+ +L K + LC     E E       + EE+
Sbjct: 288 LLGRKNEMEKQRKEIKELWKQQQNKLLETETALKKAKLLCMQRQDEYEKAKSSMFRAEEE 347

Query: 71  STS 63
             S
Sbjct: 348 QLS 350


>sp|Q8CGF1|RHG29_MOUSE Rho GTPase-activating protein 29 OS=Mus
           musculus GN=Arhgap29 PE=1 SV=1
          Length = 1266

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
 Frame = -3

Query: 230 LLGGHNDSESGHDDAS--WSQSENAIGETDFSLHKRRTLC-----EIESTDIPSLKPEED 72
           LLG  N+ E    +    W Q +N + ET+ +L K + LC     E E       + EE+
Sbjct: 293 LLGRKNEMEKQRKEIKDLWKQQQNKLLETETALKKAKLLCMQRQDEYEKAKSSMFRAEEE 352

Query: 71  STS 63
             S
Sbjct: 353 QLS 355


>sp|A4J5Z5|HSLU_DESRM ATP-dependent hsl protease ATP-binding subunit
           hslU OS=Desulfotomaculum reducens (strain MI-1) GN=hslU
           PE=3 SV=1
          Length = 466

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 21/71 (29%), Positives = 34/71 (47%)
 Frame = -3

Query: 230 LLGGHNDSESGHDDASWSQSENAIGETDFSLHKRRTLCEIESTDIPSLKPEEDSTSKKKV 51
           L GG  D++   +D SW Q  + I     +L ++ + CE+E  D   ++ E+ ST   +V
Sbjct: 152 LFGGVQDTQQ--EDKSWEQQNSRIKFERETLREKMSRCELEK-DYLEIEVEDQSTPMLEV 208

Query: 50  RQVQAVVMDGV 18
                V   GV
Sbjct: 209 FSNSGVEEMGV 219


>sp|Q13439|GOGA4_HUMAN Golgin subfamily A member 4 OS=Homo sapiens
           GN=GOLGA4 PE=1 SV=1
          Length = 2230

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 23/62 (37%), Positives = 29/62 (46%)
 Frame = -3

Query: 392 EGHYRSAVLENRFKSPDHSSCVRLVDREERKALRDGSSGAMQSIPGDTDEVELCLLGGHN 213
           E  +RS + E+ F+S    S VR   RE    L   SS A    P D D  E   L G++
Sbjct: 73  ESLFRSPIKESLFRSSSKESLVRTSSRESLNRLDLDSSTASFDPPSDMDS-EAEDLVGNS 131

Query: 212 DS 207
           DS
Sbjct: 132 DS 133
tr_hit_id A8XG52
Definition tr|A8XG52|A8XG52_CAEBR Putative uncharacterized protein OS=Caenorhabditis briggsae
Align length 128
Score (bit) 37.7
E-value 0.33
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916958|Adiantum capillus-veneris mRNA, clone:
YMU001_000094_A06.
         (514 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8XG52|A8XG52_CAEBR Putative uncharacterized protein OS=Caeno...    38   0.33 
tr|A3K1A5|A3K1A5_9RHOB Putative uncharacterized protein OS=Sagit...    37   0.74 
tr|Q7ULT6|Q7ULT6_RHOBA Putative uncharacterized protein OS=Rhodo...    35   1.6  
tr|B8LCC3|B8LCC3_THAPS Predicted protein OS=Thalassiosira pseudo...    35   2.1  
tr|A4T203|A4T203_MYCGI Heavy metal translocating P-type ATPase O...    34   3.7  
tr|Q0CGX0|Q0CGX0_ASPTN Predicted protein OS=Aspergillus terreus ...    34   4.8  
tr|Q7UML2|Q7UML2_RHOBA BatB OS=Rhodopirellula baltica GN=batB PE...    33   6.2  
tr|Q21TC5|Q21TC5_RHOFD Formate dehydrogenase, alpha subunit OS=R...    33   8.1  
tr|A9RWL7|A9RWL7_PHYPA Predicted protein OS=Physcomitrella paten...    33   8.1  
tr|B0DM07|B0DM07_LACBS Predicted protein OS=Laccaria bicolor (st...    33   8.1  

>tr|A8XG52|A8XG52_CAEBR Putative uncharacterized protein
           OS=Caenorhabditis briggsae GN=CBG12605 PE=4 SV=1
          Length = 283

 Score = 37.7 bits (86), Expect = 0.33
 Identities = 29/128 (22%), Positives = 58/128 (45%)
 Frame = -3

Query: 386 HYRSAVLENRFKSPDHSSCVRLVDREERKALRDGSSGAMQSIPGDTDEVELCLLGGHNDS 207
           H++S   + R +  D+    R   R   + +++GSSG     P + +   L L GG    
Sbjct: 148 HHKSG--DKRHRDQDYKDRDRAKRRHHDEPIKNGSSGVPPLAPNNENGNGLPLFGGR--- 202

Query: 206 ESGHDDASWSQSENAIGETDFSLHKRRTLCEIESTDIPSLKPEEDSTSKKKVRQVQAVVM 27
           ++G +     + E  I      L ++  +   +  +I +LK ++ +  KK   +VQ +V 
Sbjct: 203 DNGENMEKQQRMEEEIRRLKAQLAEKEVMIFDKDKEISNLKADKYNLEKKHRERVQQLVK 262

Query: 26  DGVRAIRS 3
           +   +IR+
Sbjct: 263 EKEESIRA 270


>tr|A3K1A5|A3K1A5_9RHOB Putative uncharacterized protein
           OS=Sagittula stellata E-37 GN=SSE37_03625 PE=4 SV=1
          Length = 529

 Score = 36.6 bits (83), Expect = 0.74
 Identities = 29/100 (29%), Positives = 40/100 (40%), Gaps = 5/100 (5%)
 Frame = -3

Query: 500 GKAVNSLRGAIACQARKNSKKVAHNHCNSAFLQVNGEGHYRSAVLENRFKSPDHSSCVR- 324
           G+A  +L  A A  AR       H     AF  +      R AV E   ++PD  +  R 
Sbjct: 71  GQAEAALTMARALAARYPDAATPHEALYHAFTALRRPAEARDAVAEALCRTPDKPTLYRD 130

Query: 323 ----LVDREERKALRDGSSGAMQSIPGDTDEVELCLLGGH 216
               L+D  E  ALR  +  A  ++P D   V L  +  H
Sbjct: 131 LARTLMDLGEMAALRAPAEAAADALPDDPHAVRLAAVAAH 170


>tr|Q7ULT6|Q7ULT6_RHOBA Putative uncharacterized protein
           OS=Rhodopirellula baltica GN=RB9298 PE=4 SV=1
          Length = 330

 Score = 35.4 bits (80), Expect = 1.6
 Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
 Frame = -3

Query: 293 RDGSSGAMQSIPGDTDEVELCLLGGHNDSESGHDDASWSQSENAIGETDFSLHKRRTLCE 114
           RD       ++P +TDE+  C LGG   +E+GH +    +   A   T FS +K + LCE
Sbjct: 199 RDAKHSGTMTMPINTDEI--CALGGDFKTETGHTEWIDGRVHQAGVTTVFSPNK-KVLCE 255

Query: 113 IEST--DIPSLKPEEDSTSKKKVRQVQAV 33
           I     DI      E  +    VR   AV
Sbjct: 256 ISGVEYDIDFTNMREGKSPPAGVRTYAAV 284


>tr|B8LCC3|B8LCC3_THAPS Predicted protein OS=Thalassiosira
           pseudonana CCMP1335 GN=THAPSDRAFT_25096 PE=4 SV=1
          Length = 1023

 Score = 35.0 bits (79), Expect = 2.1
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
 Frame = -3

Query: 353 KSPDHSSCVRLVDREERKALRDGSSGAMQSIPGDTDEVELCLL----GGHNDSESGHDDA 186
           ++P     +R V   +     DG +GA  S+P  T  V++ ++     G   + +  DD 
Sbjct: 390 RAPSTGGGLRKVQSVDELLGLDGENGASPSLPSSTPSVQIIMINQTTNGTKTNSTDEDDT 449

Query: 185 SWSQSENAIGETDFS 141
           S + S N + ET  S
Sbjct: 450 SLANSSNFVHETSIS 464


>tr|A4T203|A4T203_MYCGI Heavy metal translocating P-type ATPase
           OS=Mycobacterium gilvum (strain PYR-GCK) GN=Mflv_2822
           PE=3 SV=1
          Length = 870

 Score = 34.3 bits (77), Expect = 3.7
 Identities = 32/104 (30%), Positives = 46/104 (44%)
 Frame = -3

Query: 512 QGGVGKAVNSLRGAIACQARKNSKKVAHNHCNSAFLQVNGEGHYRSAVLENRFKSPDHSS 333
           Q GV ++   +R  IAC A +N +KV         L  +G   +R+  L+     PD   
Sbjct: 9   QIGVDESYAHMR-IIACMADRNGEKVGR-------LGADGAPTHRTLALDLTDLLPDSDE 60

Query: 332 CVRLVDREERKALRDGSSGAMQSIPGDTDEVELCLLGGHNDSES 201
             R  DR  R  + DG       I GDT +  LC+   H D+E+
Sbjct: 61  --RCADRLTRGLVDDGIIEQAHVIDGDTPKPRLCV---HYDAEA 99


>tr|Q0CGX0|Q0CGX0_ASPTN Predicted protein OS=Aspergillus terreus
           (strain NIH 2624) GN=ATEG_07072 PE=4 SV=1
          Length = 1127

 Score = 33.9 bits (76), Expect = 4.8
 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
 Frame = -3

Query: 239 ELCLLGG---HNDSESGHDDASWSQSENAIGETDFSLHKRRTLCEIESTDIPSLKPEEDS 69
           E CL  G   H D   G   A   +S ++ G +   LH R       S D+  ++PEE  
Sbjct: 764 EFCLDDGGERHFDKRQGLSSAQSHRSSHSHGHSHSHLHHRGAAA---SQDLIVVEPEETD 820

Query: 68  TSKKKVRQVQAVVMDGVR 15
            +K+    ++ + M+G R
Sbjct: 821 LTKRGASSIKEITMEGYR 838


>tr|Q7UML2|Q7UML2_RHOBA BatB OS=Rhodopirellula baltica GN=batB PE=4
           SV=1
          Length = 747

 Score = 33.5 bits (75), Expect = 6.2
 Identities = 31/106 (29%), Positives = 41/106 (38%), Gaps = 10/106 (9%)
 Frame = -3

Query: 353 KSPDHSSCVRLVDREERKALRDGSS-------GAMQSIPGDTDEVELCLLGGHNDSESGH 195
           +S D SS      ++E K   D SS       G  QS  GD +E E    G  +      
Sbjct: 558 QSEDESS------KDEAKPSEDNSSENQQDQNGEEQSASGDQNESESASDGAESQENDSQ 611

Query: 194 DDASWSQSENAIGETDFSLHKRRTLCE---IESTDIPSLKPEEDST 66
           + ++  Q EN     D          E    +S D P+  PEEDST
Sbjct: 612 ESSAGEQQENQQQNGDDGNESESAESEQASAQSGDDPNQMPEEDST 657


>tr|Q21TC5|Q21TC5_RHOFD Formate dehydrogenase, alpha subunit
           OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC
           BAA-621 / T118) GN=Rfer_3269 PE=4 SV=1
          Length = 942

 Score = 33.1 bits (74), Expect = 8.1
 Identities = 30/111 (27%), Positives = 44/111 (39%), Gaps = 10/111 (9%)
 Frame = -3

Query: 398 NGEGHYRSAVLENRFKSPDHSSCVRLVDREERKALRDG-SSGAMQSIPGDTDEVELCLLG 222
           N E +    ++   F S +   C RL       AL +G  SGA+ +   D D  EL L+ 
Sbjct: 361 NEEAYLFQKLVRTGFGSNNVDHCTRLCHASSVAALLEGIGSGAVSNQVNDVDHAELILVI 420

Query: 221 GHNDSESGHDDASWSQSENAIG---------ETDFSLHKRRTLCEIESTDI 96
           G N + +    A+W ++    G          TD   H  R L     TD+
Sbjct: 421 GSNTAGNHPVAATWMKNAAKRGLKIVTADPRGTDLDKHAWRKLQFKADTDV 471


>tr|A9RWL7|A9RWL7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_71500 PE=4 SV=1
          Length = 264

 Score = 33.1 bits (74), Expect = 8.1
 Identities = 34/124 (27%), Positives = 51/124 (41%), Gaps = 17/124 (13%)
 Frame = -3

Query: 344 DHSSCVRLVDREERKALRDGSSGAMQSIPGDTDEV------ELCLLGGHND--------S 207
           DH        R E K L DGS+ A +   G  +EV      EL  LG   D         
Sbjct: 15  DHGQPYITTTRMETKVLDDGSAYARRDYGGTKEEVLSRDEGELRKLGTLQDDERILGIYE 74

Query: 206 ESGHDDASWSQSENAIGETD--FSLHKRRTLCEIESTDIPSLKPE-EDSTSKKKVRQVQA 36
           E+G +D+    +   +G+ D    +H R     +ES   P +  E    T+ KKV+ V  
Sbjct: 75  ENGLEDSLELITSIGLGDYDKIVEIHSREVYTMLESFQAPEVTVETRYKTADKKVKPVAG 134

Query: 35  VVMD 24
            +++
Sbjct: 135 PLLE 138


>tr|B0DM07|B0DM07_LACBS Predicted protein OS=Laccaria bicolor
           (strain S238N-H82) GN=LACBIDRAFT_304619 PE=4 SV=1
          Length = 204

 Score = 33.1 bits (74), Expect = 8.1
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
 Frame = -3

Query: 431 HNHCNSAFLQV---NGEGHYRSAVLENRFKSPDHSSC---VRLVDREERKALRDGSSGAM 270
           H +CN+ F  +   N   HY + V +  F+S  H +C   V++V + ++K + D S   +
Sbjct: 97  HENCNNCFQCLAVKNWFSHYNNTVDDLIFRSNLHRTCTPMVKVVSKAKKKGVNDTSQDEV 156

Query: 269 QSIPG 255
            + PG
Sbjct: 157 FTFPG 161