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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916971
Clone id YMU001_000094_B09
Library
Length 520
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000094_B09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GAGTACCTGCGAGAGAGAGAGGCTCAATGTAACTCAAAATGATAATTGTATTATGGTTGA
GCTTGAACAACTTACAGTGAGTGTGTACAATGCCTCTTATATAGGCATAAAATAGATGAC
CTCATGGGTGACTTCATCAGATAATACATCATCCACTGTGTCAGTAGTCCTAGGTGGAAA
GTGAGCACATGCTACCACATGGGATACACATGCCCAATGCCATGTAGGCATCCTCAACAC
TAGAGAAGATGCGCACAAAGAAGCATAAGCGTAGGCCAAAGCCCACAGATCCCAACAATC
TGCAAATGATATTCTCATACAAGAATACCACTGTTGATCTAGTAGTATTATATGGCAATG
CCCTGGCTTCAACCGCACTTGCTCACATAATAGGTAGCCATCATGATGTACCTACTTGAC
CTATAAGTTATGTTTCGGAATGGACCCATGAAGTCCAATTCCCATTGCATATATACTCCT
AATGATCGTACTAGAGTCAGAGGTATCATGTCAGCTGCTG
■■Homology search results ■■ -
sp_hit_id Q9BY71
Definition sp|Q9BY71|LRRC3_HUMAN Leucine-rich repeat-containing protein 3 OS=Homo sapiens
Align length 17
Score (bit) 32.0
E-value 1.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916971|Adiantum capillus-veneris mRNA, clone:
YMU001_000094_B09.
         (520 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9BY71|LRRC3_HUMAN Leucine-rich repeat-containing protein 3 O...    32   1.8  
sp|O67258|SYK_AQUAE Lysyl-tRNA synthetase OS=Aquifex aeolicus GN...    30   6.8  
sp|Q92Q22|SYS_RHIME Seryl-tRNA synthetase OS=Rhizobium meliloti ...    30   6.9  
sp|Q7Z020|TRPA1_DROME Transient receptor potential cation channe...    30   8.8  
sp|Q46IK0|THIC_PROMT Thiamine biosynthesis protein thiC OS=Proch...    30   8.8  
sp|A2C559|THIC_PROM1 Thiamine biosynthesis protein thiC OS=Proch...    30   8.8  

>sp|Q9BY71|LRRC3_HUMAN Leucine-rich repeat-containing protein 3
           OS=Homo sapiens GN=LRRC3 PE=1 SV=1
          Length = 257

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 190 CYHMGYTCPMPCRHPQH 240
           C H+G  CP PCR P H
Sbjct: 26  CLHLGAACPQPCRCPDH 42


>sp|O67258|SYK_AQUAE Lysyl-tRNA synthetase OS=Aquifex aeolicus
           GN=lysS PE=3 SV=1
          Length = 597

 Score = 30.0 bits (66), Expect = 6.8
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
 Frame = -3

Query: 512 DMIPLTLVRSLGV----YMQWELDFMGPFRNITY 423
           DM    L ++LG     Y +WELDF  PF+ + Y
Sbjct: 382 DMFVYLLEKTLGTLKVKYGEWELDFSPPFKKVRY 415


>sp|Q92Q22|SYS_RHIME Seryl-tRNA synthetase OS=Rhizobium meliloti
           GN=serS PE=3 SV=1
          Length = 427

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -1

Query: 322 LYENIICRLLGSVGFGLRLCFFVRIFSSVEDAYMALGMCIPCG 194
           L+  ++    G +GFG R  + + ++   +DAY  +  C  CG
Sbjct: 315 LHYRVMTLCTGDMGFGARKTYDLEVWLPGQDAYREISSCSVCG 357


>sp|Q7Z020|TRPA1_DROME Transient receptor potential cation channel
            subfamily A member 1 OS=Drosophila melanogaster GN=TrpA1
            PE=2 SV=2
          Length = 1217

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = -3

Query: 506  IPLTLVRSLGVYMQWELDFMGPFRNITYRSSRYIMMATYYV 384
            IP++L+R+  + M  ELDF+G + N  YR    + M ++ +
Sbjct: 988  IPMSLLRTFSM-MLGELDFVGTYVNTYYRDQLKVPMTSFLI 1027


>sp|Q46IK0|THIC_PROMT Thiamine biosynthesis protein thiC
           OS=Prochlorococcus marinus (strain NATL2A) GN=thiC PE=3
           SV=1
          Length = 466

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 15/36 (41%), Positives = 25/36 (69%), Gaps = 4/36 (11%)
 Frame = -3

Query: 170 GLLTQWMMYYLMKSPM--RSSILC-LYKRH-CTHSL 75
           G+L QWM+Y+  ++P+  R   +C ++KR+ CT SL
Sbjct: 199 GILAQWMLYHYKQNPLFTRFDDICEIFKRYDCTFSL 234


>sp|A2C559|THIC_PROM1 Thiamine biosynthesis protein thiC
           OS=Prochlorococcus marinus (strain NATL1A) GN=thiC PE=3
           SV=1
          Length = 466

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 15/36 (41%), Positives = 25/36 (69%), Gaps = 4/36 (11%)
 Frame = -3

Query: 170 GLLTQWMMYYLMKSPM--RSSILC-LYKRH-CTHSL 75
           G+L QWM+Y+  ++P+  R   +C ++KR+ CT SL
Sbjct: 199 GILAQWMLYHYKQNPLFTRFDDICEIFKRYDCTFSL 234
tr_hit_id Q7XRJ3
Definition tr|Q7XRJ3|Q7XRJ3_ORYSJ OSJNBa0042D13.17 protein OS=Oryza sativa subsp. japonica
Align length 47
Score (bit) 42.0
E-value 0.018
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916971|Adiantum capillus-veneris mRNA, clone:
YMU001_000094_B09.
         (520 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q7XRJ3|Q7XRJ3_ORYSJ OSJNBa0042D13.17 protein OS=Oryza sativa ...    42   0.018
tr|Q53JT7|Q53JT7_ORYSJ Retrotransposon protein, putative, unclas...    40   0.070
tr|Q2AA50|Q2AA50_ASPOF Retrotransposon gag protein OS=Asparagus ...    36   0.11 
tr|Q8S647|Q8S647_ORYSA Putative retroelement OS=Oryza sativa GN=...    39   0.15 
tr|Q8LMD8|Q8LMD8_ORYSJ Putative retroelement (Retrotransposon pr...    39   0.15 
tr|Q8LLX4|Q8LLX4_ORYSJ Putative retroelement OS=Oryza sativa sub...    39   0.15 
tr|Q7XXB6|Q7XXB6_ORYSA OSJNBa0057M08.8 protein OS=Oryza sativa G...    39   0.15 
tr|Q7XWW3|Q7XWW3_ORYSJ OSJNBb0058J09.16 protein OS=Oryza sativa ...    39   0.15 
tr|Q75H60|Q75H60_ORYSJ Putative reverse transcriptase OS=Oryza s...    39   0.15 
tr|Q339Y3|Q339Y3_ORYSJ Retrotransposon protein, putative, Ty3-gy...    39   0.15 
tr|Q10GV1|Q10GV1_ORYSJ Retrotransposon protein, putative, Ty3-gy...    39   0.15 
tr|Q7X8T3|Q7X8T3_ORYSJ OSJNBa0060B20.3 protein OS=Oryza sativa s...    38   0.26 
tr|Q5JPV7|Q5JPV7_ORYSA OSJNBa0085C10.34 protein OS=Oryza sativa ...    38   0.26 
tr|A5AP12|A5AP12_VITVI Putative uncharacterized protein OS=Vitis...    33   0.33 
tr|Q7XQC1|Q7XQC1_ORYSJ OSJNBb0060M15.10 protein (OSJNBb0021I10.3...    38   0.35 
tr|Q6AU29|Q6AU29_ORYSJ Putative integrase (Retrotransposon prote...    38   0.35 
tr|A5AUH8|A5AUH8_VITVI Putative uncharacterized protein OS=Vitis...    35   0.54 
tr|Q7XWA9|Q7XWA9_ORYSJ OSJNBa0061A09.17 protein OS=Oryza sativa ...    37   0.59 
tr|A5APW4|A5APW4_VITVI Putative uncharacterized protein OS=Vitis...    37   0.59 
tr|A5ANM7|A5ANM7_VITVI Putative uncharacterized protein OS=Vitis...    33   0.70 
tr|Q9MAR5|Q9MAR5_ARATH F28H19.8 protein OS=Arabidopsis thaliana ...    37   0.77 
tr|Q0E1H2|Q0E1H2_ORYSJ Os02g0447000 protein OS=Oryza sativa subs...    37   0.77 
tr|A5BZ59|A5BZ59_VITVI Putative uncharacterized protein OS=Vitis...    37   0.77 
tr|Q0JEK7|Q0JEK7_ORYSJ Os04g0252000 protein OS=Oryza sativa subs...    36   1.0  
tr|A5AKC3|A5AKC3_VITVI Putative uncharacterized protein OS=Vitis...    34   1.2  
tr|Q2QTE2|Q2QTE2_ORYSJ Retrotransposon protein, putative, unclas...    36   1.3  
tr|A5C0S0|A5C0S0_VITVI Putative uncharacterized protein OS=Vitis...    36   1.3  
tr|A5BSU0|A5BSU0_VITVI Putative uncharacterized protein OS=Vitis...    36   1.3  
tr|A5AFU5|A5AFU5_VITVI Putative uncharacterized protein OS=Vitis...    36   1.3  
tr|A5C692|A5C692_VITVI Putative uncharacterized protein OS=Vitis...    33   1.4  

>tr|Q7XRJ3|Q7XRJ3_ORYSJ OSJNBa0042D13.17 protein OS=Oryza sativa
           subsp. japonica GN=OSJNBa0042D13.17 PE=4 SV=2
          Length = 112

 Score = 42.0 bits (97), Expect = 0.018
 Identities = 21/47 (44%), Positives = 29/47 (61%)
 Frame = -3

Query: 518 AADMIPLTLVRSLGVYMQWELDFMGPFRNITYRSSRYIMMATYYVSK 378
           A D +PLT    +G++  W +DFMGPF     R+  YI++A  YVSK
Sbjct: 44  ARDAMPLTYNLQVGIFDVWGIDFMGPFPK--SRNCEYILVAVDYVSK 88


>tr|Q53JT7|Q53JT7_ORYSJ Retrotransposon protein, putative,
           unclassified OS=Oryza sativa subsp. japonica
           GN=LOC_Os11g23130 PE=4 SV=1
          Length = 399

 Score = 40.0 bits (92), Expect = 0.070
 Identities = 21/47 (44%), Positives = 27/47 (57%)
 Frame = -3

Query: 518 AADMIPLTLVRSLGVYMQWELDFMGPFRNITYRSSRYIMMATYYVSK 378
           A D IPLT    L ++  W +DFMGPF     R+  YI++   YVSK
Sbjct: 23  ARDAIPLTYNMQLEIFDVWGIDFMGPFPK--SRNCEYILVVVDYVSK 67


>tr|Q2AA50|Q2AA50_ASPOF Retrotransposon gag protein OS=Asparagus
            officinalis GN=19.t00014 PE=4 SV=1
          Length = 1788

 Score = 36.2 bits (82), Expect(2) = 0.11
 Identities = 18/45 (40%), Positives = 29/45 (64%)
 Frame = -3

Query: 512  DMIPLTLVRSLGVYMQWELDFMGPFRNITYRSSRYIMMATYYVSK 378
            +M+PL  + S+ ++  W +DFMGPF N     + YI++A  Y+SK
Sbjct: 1410 NMMPLQPILSVELFDLWGIDFMGPFPNSF--GNVYILVAVEYMSK 1452



 Score = 21.9 bits (45), Expect(2) = 0.11
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -1

Query: 373  VEARALPYNTTRSTVVFLYENIICR 299
            VEA A   N  +  V FL ENI  R
Sbjct: 1454 VEAVACKTNDNKVVVKFLKENIFAR 1478


>tr|Q8S647|Q8S647_ORYSA Putative retroelement OS=Oryza sativa
           GN=OSJNBa0004A10.21 PE=4 SV=1
          Length = 1085

 Score = 38.9 bits (89), Expect = 0.15
 Identities = 20/45 (44%), Positives = 27/45 (60%)
 Frame = -3

Query: 512 DMIPLTLVRSLGVYMQWELDFMGPFRNITYRSSRYIMMATYYVSK 378
           D +PLT    + ++  W +DFMGPF     RS  YI++A  YVSK
Sbjct: 731 DAMPLTYNLQVEIFDVWGIDFMGPFPK--SRSCEYILVAVDYVSK 773


>tr|Q8LMD8|Q8LMD8_ORYSJ Putative retroelement (Retrotransposon
           protein, putative, Ty3-gypsy subclass) OS=Oryza sativa
           subsp. japonica GN=OSJNAa0036D19.5 PE=4 SV=1
          Length = 253

 Score = 38.9 bits (89), Expect = 0.15
 Identities = 19/47 (40%), Positives = 28/47 (59%)
 Frame = -3

Query: 518 AADMIPLTLVRSLGVYMQWELDFMGPFRNITYRSSRYIMMATYYVSK 378
           A D +PLT    + ++  W +DFMGPF     R+  YI++A  Y+SK
Sbjct: 23  ARDAMPLTYNLQIEIFDVWGIDFMGPFPK--SRNCEYILVAVDYISK 67


>tr|Q8LLX4|Q8LLX4_ORYSJ Putative retroelement OS=Oryza sativa subsp.
           japonica GN=OSJNAa0053D03.14 PE=4 SV=1
          Length = 1093

 Score = 38.9 bits (89), Expect = 0.15
 Identities = 20/45 (44%), Positives = 27/45 (60%)
 Frame = -3

Query: 512 DMIPLTLVRSLGVYMQWELDFMGPFRNITYRSSRYIMMATYYVSK 378
           D +PLT    + ++  W +DFMGPF     RS  YI++A  YVSK
Sbjct: 739 DAMPLTYNLQVEIFDVWGIDFMGPFPK--SRSCEYILVAVDYVSK 781


>tr|Q7XXB6|Q7XXB6_ORYSA OSJNBa0057M08.8 protein OS=Oryza sativa
           GN=OSJNBa0057M08.8 PE=4 SV=3
          Length = 159

 Score = 38.9 bits (89), Expect = 0.15
 Identities = 20/47 (42%), Positives = 28/47 (59%)
 Frame = -3

Query: 518 AADMIPLTLVRSLGVYMQWELDFMGPFRNITYRSSRYIMMATYYVSK 378
           A D +PLT    + ++  W +DFMGPF     R+  YI++A  YVSK
Sbjct: 23  ARDAMPLTYNLQVEIFDVWGIDFMGPFPK--SRNCEYILVAVDYVSK 67


>tr|Q7XWW3|Q7XWW3_ORYSJ OSJNBb0058J09.16 protein OS=Oryza sativa
           subsp. japonica GN=OSJNBb0058J09.16 PE=4 SV=2
          Length = 1045

 Score = 38.9 bits (89), Expect = 0.15
 Identities = 20/47 (42%), Positives = 28/47 (59%)
 Frame = -3

Query: 518 AADMIPLTLVRSLGVYMQWELDFMGPFRNITYRSSRYIMMATYYVSK 378
           A D +PLT    + ++  W +DFMGPF     R+  YI++A  YVSK
Sbjct: 816 ARDAMPLTYNLQVEIFDVWGIDFMGPFPK--SRNCEYILVAVDYVSK 860


>tr|Q75H60|Q75H60_ORYSJ Putative reverse transcriptase OS=Oryza
           sativa subsp. japonica GN=OSJNBb0007E22.28 PE=4 SV=1
          Length = 743

 Score = 38.9 bits (89), Expect = 0.15
 Identities = 20/47 (42%), Positives = 28/47 (59%)
 Frame = -3

Query: 518 AADMIPLTLVRSLGVYMQWELDFMGPFRNITYRSSRYIMMATYYVSK 378
           A D +PLT    + ++  W +DFMGPF     R+  YI++A  YVSK
Sbjct: 426 ARDAMPLTYNLQVEIFDVWGIDFMGPFPK--SRNCEYILVAVDYVSK 470


>tr|Q339Y3|Q339Y3_ORYSJ Retrotransposon protein, putative, Ty3-gypsy
           subclass OS=Oryza sativa subsp. japonica
           GN=LOC_Os10g17400 PE=4 SV=1
          Length = 1120

 Score = 38.9 bits (89), Expect = 0.15
 Identities = 20/45 (44%), Positives = 27/45 (60%)
 Frame = -3

Query: 512 DMIPLTLVRSLGVYMQWELDFMGPFRNITYRSSRYIMMATYYVSK 378
           D +PLT    + ++  W +DFMGPF     RS  YI++A  YVSK
Sbjct: 766 DAMPLTYNLQVEIFDVWGIDFMGPFPK--SRSCEYILVAVDYVSK 808