BP916977
Clone id YMU001_000094_C03
Library
Length 433
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000094_C03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
TGCACTGATTGTAGGATTTTCGCCATAGCGATAGGGCCAGAAAGCTCTAGTCCGTTTTTG
GTAGATGCAGAGCGATGGCCTCTATCCTGATTGTAGGATTTGCTCCCCAAGGGCAATGCC
AGAAAGCTCTGGGCCGTTTTTAGCAGATGTAAGGCGAGGGCTCTTGCAGAAAGATATCAT
GCTTAGGAACTCTTGGAGAAAGATGGCGTGCTTGGCTGTGATTTGATCAATATGTATGCC
ACATGAGGTGCCCAAATTGCGAGTTTGTGTATGTGTGTGAGCTTATAGACGGACAATTCG
GTAGATTTAACCTACCCTAAGACCACGAACATTAAAAGTAGTGTAGGTAATGGTAGGCAT
GATAGAAAAAGTGAATGTGACAGTCCACATGTTGGTAGATGTTGCAGAAGGGATGATGAT
GACATAACACATA
■■Homology search results ■■ -
sp_hit_id P23597
Definition sp|P23597|PRTE_ERWCH Proteases secretion protein prtE OS=Erwinia chrysanthemi
Align length 59
Score (bit) 37.0
E-value 0.035
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916977|Adiantum capillus-veneris mRNA, clone:
YMU001_000094_C03.
(433 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P23597|PRTE_ERWCH Proteases secretion protein prtE OS=Erwinia... 37 0.035
sp|Q4KM32|MUS81_RAT Crossover junction endonuclease MUS81 OS=Rat... 29 7.3
sp|A4XZ62|KATG_PSEMY Catalase-peroxidase OS=Pseudomonas mendocin... 29 7.3
sp|B2VFG0|KATG_ERWT9 Catalase-peroxidase OS=Erwinia tasmaniensis... 29 7.3

>sp|P23597|PRTE_ERWCH Proteases secretion protein prtE OS=Erwinia
chrysanthemi GN=prtE PE=3 SV=1
Length = 448

Score = 37.0 bits (84), Expect = 0.035
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = -2

Query: 261 RNLGTSCGIHIDQITAKHAIFLQEFLSMISFCKSPRLTSAKNGPELSG-IALGEQILQS 88
R G DQ+ A+ A L E + S +PRLT A+ PE++ IAL E +L+S
Sbjct: 105 RTTSEGLGSQYDQLIAREARLLAEQRNQSSLAATPRLTQARQRPEMAAIIALQEDLLRS 163


>sp|Q4KM32|MUS81_RAT Crossover junction endonuclease MUS81 OS=Rattus
norvegicus GN=Mus81 PE=2 SV=1
Length = 551

Score = 29.3 bits (64), Expect = 7.3
Identities = 16/41 (39%), Positives = 25/41 (60%)
Frame = +2

Query: 65 MQSDGLYPDCRICSPRAMPESSGPFLADVRRGLLQKDIMLR 187
+ + L C +PR +PESS P+ A RGLL ++++LR
Sbjct: 158 LTKEELLQKCAQKTPRVVPESSRPWPA--LRGLLHRNLVLR 196


>sp|A4XZ62|KATG_PSEMY Catalase-peroxidase OS=Pseudomonas mendocina
(strain ymp) GN=katG PE=3 SV=1
Length = 716

Score = 29.3 bits (64), Expect = 7.3
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -1

Query: 214 QARHLSPRVPKHDIFLQEPSP 152
+AR+L P VPK D+ Q+P P
Sbjct: 409 KARYLGPEVPKEDLIWQDPLP 429


>sp|B2VFG0|KATG_ERWT9 Catalase-peroxidase OS=Erwinia tasmaniensis
(strain DSM 17950 / Et1/99) GN=katG PE=3 SV=1
Length = 729

Score = 29.3 bits (64), Expect = 7.3
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -1

Query: 214 QARHLSPRVPKHDIFLQEPSP 152
+AR+L P VPK D+ Q+P P
Sbjct: 422 KARYLGPEVPKEDLIWQDPLP 442


tr_hit_id A0C7C3
Definition tr|A0C7C3|A0C7C3_PARTE Chromosome undetermined scaffold_155, whole genome shotgun sequence OS=Paramecium tetraurelia
Align length 39
Score (bit) 34.3
E-value 3.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916977|Adiantum capillus-veneris mRNA, clone:
YMU001_000094_C03.
(433 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A0C7C3|A0C7C3_PARTE Chromosome undetermined scaffold_155, who... 34 3.2

>tr|A0C7C3|A0C7C3_PARTE Chromosome undetermined scaffold_155, whole
genome shotgun sequence OS=Paramecium tetraurelia
GN=GSPATT00035820001 PE=4 SV=1
Length = 350

Score = 34.3 bits (77), Expect = 3.2
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +2

Query: 161 LLQKDIMLRNSWRKMACLAVI*SICMPHEVPKLRVCVCV 277
+ QKDI RNS++ + C+ I E P +RVC C+
Sbjct: 78 IFQKDIYARNSFKSVGCICRICEFSEYKENPLIRVCKCI 116