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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916979
Clone id YMU001_000094_C05
Library
Length 413
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000094_C05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TAATACGCAATCAATTGCCACGTTGCCCATATCATGGCTTCTTTAATACATAATCTTAGT
TTGTATTTGTTCTCAAAGCATACAATGAACTTGCCTTAACCTAAACTGTTCCATCTGGTT
CGAGCATTGAGAGATTCCATGCTCACAACAAAACTGACAACTCTCATCCTCCAAAATTGT
TGTTCAGAACAGACTGTCCCCCTCTTTTGTTACATTCAATACAAAGATAGAATAAATTGG
TGACCATGCATAAACTGCCACCATTTTTGTGCTCGCGATTGAAGGCCCGCAATTGCCTCA
ATCCAGAAATTGGTGTTTAATATGCACTGCCCCGAGTATGATGATAAAGCCACATATCGT
TTGGTAGATGAGGCCATTTCAGAGCTTTAACTGTGTTGTTTTCAAGCCACTGT
■■Homology search results ■■ -
sp_hit_id Q66FF2
Definition sp|Q66FF2|RHAS_YERPS HTH-type transcriptional activator rhaS OS=Yersinia pseudotuberculosis
Align length 68
Score (bit) 33.9
E-value 0.26
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916979|Adiantum capillus-veneris mRNA, clone:
YMU001_000094_C05.
         (413 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q66FF2|RHAS_YERPS HTH-type transcriptional activator rhaS OS=...    34   0.26 
sp|A4TRS8|RHAS_YERPP HTH-type transcriptional activator rhaS OS=...    34   0.26 
sp|A7FN80|RHAS_YERP3 HTH-type transcriptional activator rhaS OS=...    34   0.26 
sp|Q1CEB5|RHAS_YERPN HTH-type transcriptional activator rhaS OS=...    32   1.00 
sp|Q8ZJ00|RHAS_YERPE HTH-type transcriptional activator rhaS OS=...    32   1.00 
sp|Q1C0W1|RHAS_YERPA HTH-type transcriptional activator rhaS OS=...    32   1.00 
sp|Q1GUW3|GATA_SPHAL Glutamyl-tRNA(Gln) amidotransferase subunit...    30   3.8  
sp|P17413|FRDC_WOLSU Fumarate reductase cytochrome b subunit OS=...    29   8.4  
sp|Q14031|CO4A6_HUMAN Collagen alpha-6(IV) chain OS=Homo sapiens...    29   8.4  

>sp|Q66FF2|RHAS_YERPS HTH-type transcriptional activator rhaS
           OS=Yersinia pseudotuberculosis GN=rhaS PE=3 SV=1
          Length = 273

 Score = 33.9 bits (76), Expect = 0.26
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
 Frame = -2

Query: 409 WLENNTVKALKWPHLPNDM-----WLYHHTRGSAY*TPISGLRQLRAFNREHKNGGSLCM 245
           WL+NN  +A++WP L +        L+   +     TP   L +LR     H+   S   
Sbjct: 179 WLQNNYSEAVEWPELADRFALPLRTLHRQLKNKTGMTPQRYLTRLRLLQARHQLCYSDNS 238

Query: 244 VTNLFYLC 221
           VT++ YLC
Sbjct: 239 VTDIAYLC 246


>sp|A4TRS8|RHAS_YERPP HTH-type transcriptional activator rhaS
           OS=Yersinia pestis (strain Pestoides F) GN=rhaS PE=3
           SV=1
          Length = 273

 Score = 33.9 bits (76), Expect = 0.26
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
 Frame = -2

Query: 409 WLENNTVKALKWPHLPNDM-----WLYHHTRGSAY*TPISGLRQLRAFNREHKNGGSLCM 245
           WL+NN  +A++WP L +        L+   +     TP   L +LR     H+   S   
Sbjct: 179 WLQNNYSEAVEWPELADRFALPLRTLHRQLKNKTGMTPQRYLTRLRLLQARHQLCYSDNS 238

Query: 244 VTNLFYLC 221
           VT++ YLC
Sbjct: 239 VTDIAYLC 246


>sp|A7FN80|RHAS_YERP3 HTH-type transcriptional activator rhaS
           OS=Yersinia pseudotuberculosis serotype O:1b (strain IP
           31758) GN=rhaS PE=3 SV=1
          Length = 273

 Score = 33.9 bits (76), Expect = 0.26
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
 Frame = -2

Query: 409 WLENNTVKALKWPHLPNDM-----WLYHHTRGSAY*TPISGLRQLRAFNREHKNGGSLCM 245
           WL+NN  +A++WP L +        L+   +     TP   L +LR     H+   S   
Sbjct: 179 WLQNNYSEAVEWPELADRFALPLRTLHRQLKNKTGMTPQRYLTRLRLLQARHQLCYSDNS 238

Query: 244 VTNLFYLC 221
           VT++ YLC
Sbjct: 239 VTDIAYLC 246


>sp|Q1CEB5|RHAS_YERPN HTH-type transcriptional activator rhaS
           OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=rhaS
           PE=3 SV=1
          Length = 273

 Score = 32.0 bits (71), Expect = 1.00
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
 Frame = -2

Query: 409 WLENNTVKALKWPHLPNDM-----WLYHHTRGSAY*TPISGLRQLRAFNREHKNGGSLCM 245
           WL+NN  +A++WP L +        L+   +     TP   L +L      H+   S   
Sbjct: 179 WLQNNYSEAVEWPELADRFALPLRTLHRQLKNKTGMTPQRYLTRLHLLQARHQLCYSDNS 238

Query: 244 VTNLFYLC 221
           VT++ YLC
Sbjct: 239 VTDIAYLC 246


>sp|Q8ZJ00|RHAS_YERPE HTH-type transcriptional activator rhaS
           OS=Yersinia pestis GN=rhaS PE=3 SV=1
          Length = 273

 Score = 32.0 bits (71), Expect = 1.00
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
 Frame = -2

Query: 409 WLENNTVKALKWPHLPNDM-----WLYHHTRGSAY*TPISGLRQLRAFNREHKNGGSLCM 245
           WL+NN  +A++WP L +        L+   +     TP   L +L      H+   S   
Sbjct: 179 WLQNNYSEAVEWPELADRFALPLRTLHRQLKNKTGMTPQRYLTRLHLLQARHQLCYSDNS 238

Query: 244 VTNLFYLC 221
           VT++ YLC
Sbjct: 239 VTDIAYLC 246


>sp|Q1C0W1|RHAS_YERPA HTH-type transcriptional activator rhaS
           OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=rhaS
           PE=3 SV=1
          Length = 273

 Score = 32.0 bits (71), Expect = 1.00
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
 Frame = -2

Query: 409 WLENNTVKALKWPHLPNDM-----WLYHHTRGSAY*TPISGLRQLRAFNREHKNGGSLCM 245
           WL+NN  +A++WP L +        L+   +     TP   L +L      H+   S   
Sbjct: 179 WLQNNYSEAVEWPELADRFALPLRTLHRQLKNKTGMTPQRYLTRLHLLQARHQLCYSDNS 238

Query: 244 VTNLFYLC 221
           VT++ YLC
Sbjct: 239 VTDIAYLC 246


>sp|Q1GUW3|GATA_SPHAL Glutamyl-tRNA(Gln) amidotransferase subunit A
           OS=Sphingopyxis alaskensis GN=gatA PE=3 SV=1
          Length = 493

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 338 YSGQCILNTNFWIEAIAGLQSRAQKWW 258
           +  Q +LN    IE  AG  +RA+KWW
Sbjct: 467 FDEQGVLNAGLAIEERAGFTARAEKWW 493


>sp|P17413|FRDC_WOLSU Fumarate reductase cytochrome b subunit
           OS=Wolinella succinogenes GN=frdC PE=1 SV=1
          Length = 256

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -3

Query: 363 QTICGF-IIILGAVHIKHQFLD*GNCGPSIASTKMVAVYAWSPIYSIFVLNVTKEG 199
           Q + GF +  LG+VH+          GP  +S +MV+ + W P+Y + +  V   G
Sbjct: 129 QAMTGFAMFFLGSVHLYIMMTQPQTIGPVSSSFRMVSEWMW-PLYLVLLFAVELHG 183


>sp|Q14031|CO4A6_HUMAN Collagen alpha-6(IV) chain OS=Homo sapiens
            GN=COL4A6 PE=2 SV=3
          Length = 1691

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 254  TATIFVLAIEGPQLPQSRNWCLICTAPSMMIKPH 355
            TA I ++ +   Q+PQ  + C +C APS  I  H
Sbjct: 1548 TAPIPMMPVSQTQIPQYISRCSVCEAPSQAIAVH 1581
tr_hit_id B2K1W5
Definition tr|B2K1W5|B2K1W5_YERPB Transcriptional regulator, AraC family OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+)
Align length 68
Score (bit) 33.9
E-value 4.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916979|Adiantum capillus-veneris mRNA, clone:
YMU001_000094_C05.
         (413 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B2K1W5|B2K1W5_YERPB Transcriptional regulator, AraC family OS...    34   4.2  
tr|B1JNC5|B1JNC5_YERPY Transcriptional regulator, AraC family OS...    34   4.2  
tr|A9QYR8|A9QYR8_YERPG Transcriptional activator RhaS OS=Yersini...    34   4.2  

>tr|B2K1W5|B2K1W5_YERPB Transcriptional regulator, AraC family
           OS=Yersinia pseudotuberculosis serotype IB (strain
           PB1/+) GN=YPTS_0411 PE=4 SV=1
          Length = 273

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
 Frame = -2

Query: 409 WLENNTVKALKWPHLPNDM-----WLYHHTRGSAY*TPISGLRQLRAFNREHKNGGSLCM 245
           WL+NN  +A++WP L +        L+   +     TP   L +LR     H+   S   
Sbjct: 179 WLQNNYSEAVEWPELADRFALPLRTLHRQLKNKTGMTPQRYLTRLRLLQARHQLCYSDNS 238

Query: 244 VTNLFYLC 221
           VT++ YLC
Sbjct: 239 VTDIAYLC 246


>tr|B1JNC5|B1JNC5_YERPY Transcriptional regulator, AraC family
           OS=Yersinia pseudotuberculosis serotype O:3 (strain
           YPIII) GN=YPK_3842 PE=4 SV=1
          Length = 273

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
 Frame = -2

Query: 409 WLENNTVKALKWPHLPNDM-----WLYHHTRGSAY*TPISGLRQLRAFNREHKNGGSLCM 245
           WL+NN  +A++WP L +        L+   +     TP   L +LR     H+   S   
Sbjct: 179 WLQNNYSEAVEWPELADRFALPLRTLHRQLKNKTGMTPQRYLTRLRLLQARHQLCYSDNS 238

Query: 244 VTNLFYLC 221
           VT++ YLC
Sbjct: 239 VTDIAYLC 246


>tr|A9QYR8|A9QYR8_YERPG Transcriptional activator RhaS OS=Yersinia
           pestis bv. Antiqua (strain Angola) GN=rhaS PE=4 SV=1
          Length = 273

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
 Frame = -2

Query: 409 WLENNTVKALKWPHLPNDM-----WLYHHTRGSAY*TPISGLRQLRAFNREHKNGGSLCM 245
           WL+NN  +A++WP L +        L+   +     TP   L +LR     H+   S   
Sbjct: 179 WLQNNYSEAVEWPELADRFALPLRTLHRQLKNKTGMTPQRYLTRLRLLQARHQLCYSDNS 238

Query: 244 VTNLFYLC 221
           VT++ YLC
Sbjct: 239 VTDIAYLC 246