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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916986
Clone id YMU001_000094_D02
Library
Length 428
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000094_D02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GGCGAAGCCAAGGTGTTTTCATCATCTTTGGCAAACCTGCAAATGGCAGTGAGCAAGCAG
GATATCGATCTTTCCAAAAGTGCCTTTGTAAAGTCTGCTGGTGCTTTAGAAAAATGGTCC
TTCTTGACTGGTTTTGCTGAGCAGCTTAAAGGCCTCTAGCTTTACAAATAGCTCAAGAGT
CATTATCTTGGTTTGCGGAATTACGCTCTCTGTGCAGCATTGTGTATGTATCAAAGAAAA
AGCAGGAGGCCAAAGAAGTATCCCATCGCAAGTCTCATTACAAAAGGGGCATGCGAGATT
TCATACAAGCTCTCTTTTTCTCGCTTTTCCTCGAAGTTATCGGTGAGTGACCTTTGTATT
CTTGCCCTTCTCACAATTGCCATACTTTTAACCCTTTTTTGTATACCACCATTTGTCAAT
CTTGCCCA
■■Homology search results ■■ -
sp_hit_id O22773
Definition sp|O22773|TL16_ARATH Thylakoid lumenal 16.5 kDa protein, chloroplastic OS=Arabidopsis thaliana
Align length 47
Score (bit) 56.2
E-value 5.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916986|Adiantum capillus-veneris mRNA, clone:
YMU001_000094_D02.
         (428 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O22773|TL16_ARATH Thylakoid lumenal 16.5 kDa protein, chlorop...    56   5e-08
sp|Q6AM16|PSTB_DESPS Phosphate import ATP-binding protein pstB O...    33   0.63 
sp|Q21E72|PSTB_SACD2 Phosphate import ATP-binding protein pstB O...    32   1.4  
sp|Q8CGA0|PPM1F_MOUSE Protein phosphatase 1F OS=Mus musculus GN=...    31   2.4  
sp|Q9WVR7|PPM1F_RAT Protein phosphatase 1F OS=Rattus norvegicus ...    30   5.3  
sp|Q3TA38|T120B_MOUSE Transmembrane protein 120B OS=Mus musculus...    29   7.0  
sp|P0ADJ4|YHJR_SHIFL Uncharacterized protein yhjR OS=Shigella fl...    29   9.1  
sp|P0ADJ3|YHJR_ECOLI Uncharacterized protein yhjR OS=Escherichia...    29   9.1  
sp|A4SDR0|QUEA_PROVI S-adenosylmethionine:tRNA ribosyltransferas...    29   9.1  

>sp|O22773|TL16_ARATH Thylakoid lumenal 16.5 kDa protein,
           chloroplastic OS=Arabidopsis thaliana GN=At4g02530 PE=1
           SV=3
          Length = 216

 Score = 56.2 bits (134), Expect = 5e-08
 Identities = 28/47 (59%), Positives = 35/47 (74%)
 Frame = +1

Query: 4   EAKVFSSSLANLQMAVSKQDIDLSKSAFVKSAGALEKWSFLTGFAEQ 144
           E + F+SSLA+L  +V+K DI+ SK AFV SAGA EKW+ LTG  EQ
Sbjct: 166 EVEAFNSSLASLITSVNKNDIESSKLAFVSSAGAFEKWTTLTGLLEQ 212


>sp|Q6AM16|PSTB_DESPS Phosphate import ATP-binding protein pstB
           OS=Desulfotalea psychrophila GN=pstB PE=3 SV=1
          Length = 293

 Score = 32.7 bits (73), Expect = 0.63
 Identities = 23/83 (27%), Positives = 44/83 (53%)
 Frame = +3

Query: 42  NGSEQAGYRSFQKCLCKVCWCFRKMVLLDWFC*AA*RPLALQIAQESLSWFAELRSLCSI 221
           +G+  +G +  + C+ +      +++L+D  C +A  P+A    +E +   AEL +  SI
Sbjct: 186 SGTSLSGGQQQRLCIARAIAVSPEVILMDEPC-SALDPIATAKVEELI---AELSTQYSI 241

Query: 222 VYVSKKKQEAKEVSHRKSHYKRG 290
           V V+   Q+A  VS R +++  G
Sbjct: 242 VIVTHAMQQASRVSQRTAYFHMG 264


>sp|Q21E72|PSTB_SACD2 Phosphate import ATP-binding protein pstB
           OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 /
           DSM 17024) GN=pstB PE=3 SV=1
          Length = 293

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 23/84 (27%), Positives = 43/84 (51%)
 Frame = +3

Query: 39  ANGSEQAGYRSFQKCLCKVCWCFRKMVLLDWFC*AA*RPLALQIAQESLSWFAELRSLCS 218
           A G+  +G +  + C+ +      +++L+D  C +A  P+A    +E +   AEL    +
Sbjct: 185 APGTGLSGGQQQRLCIARTIAVSPEVILMDEPC-SALDPIATAKIEELI---AELSENFT 240

Query: 219 IVYVSKKKQEAKEVSHRKSHYKRG 290
           I  V+   Q+A  VSHR +++  G
Sbjct: 241 IAIVTHSMQQAARVSHRTAYFHMG 264


>sp|Q8CGA0|PPM1F_MOUSE Protein phosphatase 1F OS=Mus musculus
           GN=Ppm1f PE=2 SV=1
          Length = 452

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 23/88 (26%), Positives = 40/88 (45%)
 Frame = +3

Query: 66  RSFQKCLCKVCWCFRKMVLLDWFC*AA*RPLALQIAQESLSWFAELRSLCSIVYVSKKKQ 245
           RSF  CL KVC  ++K V           PL  Q  Q    W   + ++ +    +++K 
Sbjct: 124 RSFFNCLWKVCSQWQKQV-----------PLTAQAPQ--WQWLVSIHAIRN----TRRKM 166

Query: 246 EAKEVSHRKSHYKRGMRDFIQALFFSLF 329
           E + VS    ++  G+ D +   +F++F
Sbjct: 167 EDRHVSLPAFNHLFGLSDSVHRAYFAVF 194


>sp|Q9WVR7|PPM1F_RAT Protein phosphatase 1F OS=Rattus norvegicus
           GN=Ppm1f PE=2 SV=1
          Length = 450

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 22/88 (25%), Positives = 40/88 (45%)
 Frame = +3

Query: 66  RSFQKCLCKVCWCFRKMVLLDWFC*AA*RPLALQIAQESLSWFAELRSLCSIVYVSKKKQ 245
           RSF  CL +VC  ++K V           PL  Q  Q    W   + ++ +    +++K 
Sbjct: 123 RSFFNCLWEVCSQWQKRV-----------PLTAQAPQR--KWLVSIHAIRN----TRRKM 165

Query: 246 EAKEVSHRKSHYKRGMRDFIQALFFSLF 329
           E + VS    ++  G+ D +   +F++F
Sbjct: 166 EDRHVSLPAFNHLFGLSDSVHRAYFAVF 193


>sp|Q3TA38|T120B_MOUSE Transmembrane protein 120B OS=Mus musculus
           GN=Tmem120b PE=2 SV=1
          Length = 339

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +3

Query: 165 QIAQESLSWFAELRSLCSIVYVSKKKQEAKEVSHRKSHYKR 287
           +I ++ L     L++LCS   +SK+K+  K++ H    YKR
Sbjct: 27  RIYKQKLEELTSLQTLCS-TSISKQKRHLKDLKHTLQRYKR 66


>sp|P0ADJ4|YHJR_SHIFL Uncharacterized protein yhjR OS=Shigella
           flexneri GN=yhjR PE=4 SV=1
          Length = 62

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +1

Query: 13  VFSSSLANLQMAVSKQDIDLSK-SAFVKSAGALEKWSFLTGFAEQ 144
           +F + +  L+ A S  DID +  S   + A AL++W  L  FA+Q
Sbjct: 17  IFQNDIVALKQAFSLPDIDYADISQREQLAAALKRWPLLAEFAQQ 61


>sp|P0ADJ3|YHJR_ECOLI Uncharacterized protein yhjR OS=Escherichia
           coli (strain K12) GN=yhjR PE=4 SV=1
          Length = 62

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +1

Query: 13  VFSSSLANLQMAVSKQDIDLSK-SAFVKSAGALEKWSFLTGFAEQ 144
           +F + +  L+ A S  DID +  S   + A AL++W  L  FA+Q
Sbjct: 17  IFQNDIVALKQAFSLPDIDYADISQREQLAAALKRWPLLAEFAQQ 61


>sp|A4SDR0|QUEA_PROVI S-adenosylmethionine:tRNA
           ribosyltransferase-isomerase OS=Prosthecochloris
           vibrioformis (strain DSM 265) (strain DSM 265) GN=queA
           PE=3 SV=1
          Length = 341

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = -3

Query: 204 VIPQTKIMTLELFVKLE---AFKLLSKTSQEGPFF*STSRLYKGTFGKIDILLAHCH 43
           VI  TK++   LF   +   A +L+     EGP       LY+G   K D LLAH H
Sbjct: 57  VINTTKVVRARLFAVKQTGAAIELMLLEKHEGP---QNLALYRGRLKKGDRLLAHGH 110
tr_hit_id A9NQL0
Definition tr|A9NQL0|A9NQL0_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 47
Score (bit) 57.4
E-value 4.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916986|Adiantum capillus-veneris mRNA, clone:
YMU001_000094_D02.
         (428 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NQL0|A9NQL0_PICSI Putative uncharacterized protein OS=Picea...    57   4e-07
tr|Q5Z8V3|Q5Z8V3_ORYSJ Os06g0705100 protein OS=Oryza sativa subs...    47   5e-04
tr|B8B267|B8B267_ORYSI Putative uncharacterized protein OS=Oryza...    47   5e-04
tr|A3BF74|A3BF74_ORYSJ Putative uncharacterized protein OS=Oryza...    47   5e-04
tr|B6SU36|B6SU36_MAIZE Thylakoid lumenal 16.5 kDa protein OS=Zea...    47   6e-04
tr|B4FU98|B4FU98_MAIZE Putative uncharacterized protein OS=Zea m...    47   6e-04
tr|A7PF69|A7PF69_VITVI Chromosome chr11 scaffold_13, whole genom...    45   0.001
tr|A1U6S6|A1U6S6_MARAV Phosphate ABC transporter, ATPase subunit...    33   7.2  

>tr|A9NQL0|A9NQL0_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 229

 Score = 57.4 bits (137), Expect = 4e-07
 Identities = 29/47 (61%), Positives = 38/47 (80%)
 Frame = +1

Query: 4   EAKVFSSSLANLQMAVSKQDIDLSKSAFVKSAGALEKWSFLTGFAEQ 144
           +A+ F++SL +L  AVSK+++DLSKSAFV SA ALE WS LTG +EQ
Sbjct: 179 KAETFTASLDSLISAVSKKNLDLSKSAFVSSADALEDWSALTGLSEQ 225


>tr|Q5Z8V3|Q5Z8V3_ORYSJ Os06g0705100 protein OS=Oryza sativa subsp.
           japonica GN=P0018H04.9 PE=2 SV=1
          Length = 239

 Score = 47.0 bits (110), Expect = 5e-04
 Identities = 24/43 (55%), Positives = 30/43 (69%)
 Frame = +1

Query: 16  FSSSLANLQMAVSKQDIDLSKSAFVKSAGALEKWSFLTGFAEQ 144
           F+SSLA+L  +V+K D+D SKSAFV SA  LEKW    G + Q
Sbjct: 193 FNSSLASLITSVNKSDVDSSKSAFVSSATTLEKWIASAGLSGQ 235


>tr|B8B267|B8B267_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_24389 PE=4 SV=1
          Length = 239

 Score = 47.0 bits (110), Expect = 5e-04
 Identities = 24/43 (55%), Positives = 30/43 (69%)
 Frame = +1

Query: 16  FSSSLANLQMAVSKQDIDLSKSAFVKSAGALEKWSFLTGFAEQ 144
           F+SSLA+L  +V+K D+D SKSAFV SA  LEKW    G + Q
Sbjct: 193 FNSSLASLITSVNKSDVDSSKSAFVSSATTLEKWIASAGLSGQ 235


>tr|A3BF74|A3BF74_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_021696 PE=4 SV=1
          Length = 241

 Score = 47.0 bits (110), Expect = 5e-04
 Identities = 24/43 (55%), Positives = 30/43 (69%)
 Frame = +1

Query: 16  FSSSLANLQMAVSKQDIDLSKSAFVKSAGALEKWSFLTGFAEQ 144
           F+SSLA+L  +V+K D+D SKSAFV SA  LEKW    G + Q
Sbjct: 195 FNSSLASLITSVNKSDVDSSKSAFVSSATTLEKWIASAGLSGQ 237


>tr|B6SU36|B6SU36_MAIZE Thylakoid lumenal 16.5 kDa protein OS=Zea
           mays PE=2 SV=1
          Length = 246

 Score = 46.6 bits (109), Expect = 6e-04
 Identities = 26/43 (60%), Positives = 29/43 (67%)
 Frame = +1

Query: 16  FSSSLANLQMAVSKQDIDLSKSAFVKSAGALEKWSFLTGFAEQ 144
           F+SSLA L  +VSK D + SKSAFV SA ALEKW  L G   Q
Sbjct: 200 FNSSLATLFTSVSKLDPESSKSAFVSSATALEKWIALAGLGGQ 242


>tr|B4FU98|B4FU98_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 245

 Score = 46.6 bits (109), Expect = 6e-04
 Identities = 26/43 (60%), Positives = 29/43 (67%)
 Frame = +1

Query: 16  FSSSLANLQMAVSKQDIDLSKSAFVKSAGALEKWSFLTGFAEQ 144
           F+SSLA L  +VSK D + SKSAFV SA ALEKW  L G   Q
Sbjct: 199 FNSSLATLFTSVSKLDPESSKSAFVSSATALEKWIALAGLGGQ 241


>tr|A7PF69|A7PF69_VITVI Chromosome chr11 scaffold_13, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00016931001
           PE=4 SV=1
          Length = 234

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 23/43 (53%), Positives = 30/43 (69%)
 Frame = +1

Query: 4   EAKVFSSSLANLQMAVSKQDIDLSKSAFVKSAGALEKWSFLTG 132
           E   F+SSLA+L  +V + D++ SK AFV SA A EKW+ LTG
Sbjct: 184 EVDAFNSSLASLISSVVRNDMESSKIAFVSSATAFEKWTTLTG 226


>tr|A1U6S6|A1U6S6_MARAV Phosphate ABC transporter, ATPase subunit
           OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM
           11845 / VT8) GN=Maqu_3626 PE=3 SV=1
          Length = 295

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 24/84 (28%), Positives = 43/84 (51%)
 Frame = +3

Query: 39  ANGSEQAGYRSFQKCLCKVCWCFRKMVLLDWFC*AA*RPLALQIAQESLSWFAELRSLCS 218
           A  +  +G +  + C+ +      ++VL+D  C +A  P+A    +E +   AEL    +
Sbjct: 187 ATATGMSGGQQQRLCIARAIAVSPEVVLMDEPC-SALDPIATAKVEELI---AELSESYT 242

Query: 219 IVYVSKKKQEAKEVSHRKSHYKRG 290
           IV V+   Q+A  VSHR +++  G
Sbjct: 243 IVIVTHSMQQAARVSHRTAYFHLG 266