BP916989 |
Clone id |
YMU001_000094_D06 |
Library |
YMU01 |
Length |
403 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000094_D06. |
Accession |
BP916989 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL509Contig1 |
Sequence |
AAGAGATAAATACCATATTAGAATGCACACGCAGGCGTGCACACACACACACACCATGCT TATCCAAGTAGCCCTTTTCTTCATAAAAGACTCCCAGCTTCTCAAATATGGCATATTGTA AAGCTCCACTTCCATTGCCTAATCAAGGGCAGACAGCATTCTGGGGTTACTAGGTTGCCT AACCAGAGGCAGACAGCATTCTGCGGCTACAAGATTGCTACATCCAAAAAATCTCCTGTT TGAAAGTGAAGATCAGCGAGCGTCCGATTTTCATCTCCACCTCTCCTGCCCCCACTAGCA TGAGTCAGACCTACGTTGCGGATGACATTACGGCCCCGGCGATCTGGATAAACGAAAGCA AAAGAGAGTTTGGCTTCTTTGCGTCTTGCTGCAGGAGCAACTT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O64644 |
Definition |
sp|O64644|SAP18_ARATH Histone deacetylase complex subunit SAP18 OS=Arabidopsis thaliana |
Align length |
63 |
Score (bit) |
67.4 |
E-value |
2.0e-11 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP916989|Adiantum capillus-veneris mRNA, clone: YMU001_000094_D06. (403 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|O64644|SAP18_ARATH Histone deacetylase complex subunit SAP18 ... 67 2e-11 sp|Q09250|SAP18_CAEEL Probable histone deacetylase complex subun... 54 3e-07 sp|Q9VEX9|SAP18_DROME Histone deacetylase complex subunit SAP18 ... 50 3e-06 sp|Q5RDT5|SAP18_PONAB Histone deacetylase complex subunit SAP18 ... 49 8e-06 sp|O00422|SAP18_HUMAN Histone deacetylase complex subunit SAP18 ... 49 8e-06 sp|Q3T022|SAP18_BOVIN Histone deacetylase complex subunit SAP18 ... 49 8e-06 sp|O55128|SAP18_MOUSE Histone deacetylase complex subunit SAP18 ... 49 1e-05 sp|Q6YRK2|RL9_ONYPE 50S ribosomal protein L9 OS=Onion yellows ph... 32 1.3 sp|A9KK15|RLMN1_CLOPH Ribosomal RNA large subunit methyltransfer... 29 6.3 sp|P14336|POLG_TBEVW Genome polyprotein OS=Tick-borne encephalit... 29 6.3 sp|Q01299|POLG_TBEVH Genome polyprotein OS=Tick-borne encephalit... 29 6.3 sp|Q876F5|SC242_SACBA Protein transport protein SEC24-2 OS=Sacch... 29 8.3
>sp|O64644|SAP18_ARATH Histone deacetylase complex subunit SAP18 OS=Arabidopsis thaliana GN=At2g45640 PE=1 SV=1 Length = 152
Score = 67.4 bits (163), Expect = 2e-11 Identities = 33/63 (52%), Positives = 47/63 (74%) Frame = -3
Query: 401 VAPAARRKEAKLSFAFVYPDRRGRNVIRNVGLTHASGGRRGGDENRTLADLHFQTGDFLD 222 V+ AARR+ A+LSFAFVYP+ +G +R VG T A R+ D+++TL++L F+ GD+LD Sbjct: 89 VSVAARRRNARLSFAFVYPNNKGGYNVREVGETMAYPNRKQPDDSKTLSELPFEIGDYLD 148
Query: 221 VAI 213 VAI Sbjct: 149 VAI 151
>sp|Q09250|SAP18_CAEEL Probable histone deacetylase complex subunit SAP18 OS=Caenorhabditis elegans GN=C16C10.4 PE=2 SV=1 Length = 166
Score = 53.5 bits (127), Expect = 3e-07 Identities = 32/67 (47%), Positives = 40/67 (59%), Gaps = 1/67 (1%) Frame = -3
Query: 401 VAPAARRKEAKLSFAFVYPDRRG-RNVIRNVGLTHASGGRRGGDENRTLADLHFQTGDFL 225 V P ARRK FA V DR R ++R+VG T + G RG D+N+TL F+ GDF+ Sbjct: 76 VNPDARRKGTTFDFAIVQADRGSPRYILRDVGNT--TNGERGIDDNKTLQQCKFEVGDFV 133
Query: 224 DVAIL*P 204 DVAI P Sbjct: 134 DVAISLP 140
>sp|Q9VEX9|SAP18_DROME Histone deacetylase complex subunit SAP18 OS=Drosophila melanogaster GN=Bin1 PE=1 SV=1 Length = 150
Score = 50.4 bits (119), Expect = 3e-06 Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 1/67 (1%) Frame = -3
Query: 401 VAPAARRKEAKLSFAFVYPDRRGRNV-IRNVGLTHASGGRRGGDENRTLADLHFQTGDFL 225 V P R+K FA VYP+ R + +R +G+T G++G D+N+TLA F GDFL Sbjct: 73 VNPDTRKKGTYFDFAVVYPNFRSNHFQMREIGVTCT--GQKGIDDNKTLAQAKFSIGDFL 130
Query: 224 DVAIL*P 204 D++I P Sbjct: 131 DISITPP 137
>sp|Q5RDT5|SAP18_PONAB Histone deacetylase complex subunit SAP18 OS=Pongo abelii GN=SAP18 PE=2 SV=1 Length = 153
Score = 48.9 bits (115), Expect = 8e-06 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 1/70 (1%) Frame = -3
Query: 401 VAPAARRKEAKLSFAFVYPD-RRGRNVIRNVGLTHASGGRRGGDENRTLADLHFQTGDFL 225 V P AR+K +FA V+ D +R ++ +G T + GR+G D++ TL FQ GD+L Sbjct: 76 VYPEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMS--GRKGTDDSMTLQSQKFQIGDYL 133
Query: 224 DVAIL*PQNA 195 D+AI P A Sbjct: 134 DIAITPPNRA 143
>sp|O00422|SAP18_HUMAN Histone deacetylase complex subunit SAP18 OS=Homo sapiens GN=SAP18 PE=1 SV=1 Length = 153
Score = 48.9 bits (115), Expect = 8e-06 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 1/70 (1%) Frame = -3
Query: 401 VAPAARRKEAKLSFAFVYPD-RRGRNVIRNVGLTHASGGRRGGDENRTLADLHFQTGDFL 225 V P AR+K +FA V+ D +R ++ +G T + GR+G D++ TL FQ GD+L Sbjct: 76 VYPEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMS--GRKGTDDSMTLQSQKFQIGDYL 133
Query: 224 DVAIL*PQNA 195 D+AI P A Sbjct: 134 DIAITPPNRA 143
>sp|Q3T022|SAP18_BOVIN Histone deacetylase complex subunit SAP18 OS=Bos taurus GN=SAP18 PE=2 SV=1 Length = 153
Score = 48.9 bits (115), Expect = 8e-06 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 1/70 (1%) Frame = -3
Query: 401 VAPAARRKEAKLSFAFVYPD-RRGRNVIRNVGLTHASGGRRGGDENRTLADLHFQTGDFL 225 V P AR+K +FA V+ D +R ++ +G T + GR+G D++ TL FQ GD+L Sbjct: 76 VYPEARKKGTHFNFAIVFTDLKRPGYRVKEIGSTMS--GRKGTDDSMTLQSQKFQIGDYL 133
Query: 224 DVAIL*PQNA 195 D+AI P A Sbjct: 134 DIAITPPNRA 143
>sp|O55128|SAP18_MOUSE Histone deacetylase complex subunit SAP18 OS=Mus musculus GN=Sap18 PE=2 SV=1 Length = 153
Score = 48.5 bits (114), Expect = 1e-05 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 1/70 (1%) Frame = -3
Query: 401 VAPAARRKEAKLSFAFVYPD-RRGRNVIRNVGLTHASGGRRGGDENRTLADLHFQTGDFL 225 V P AR+K +FA V+ D +R ++ +G T + GR+G D++ TL FQ GD+L Sbjct: 76 VYPEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMS--GRKGTDDSMTLQSQKFQIGDYL 133
Query: 224 DVAIL*PQNA 195 D+AI P A Sbjct: 134 DIAITPPNRA 143
>sp|Q6YRK2|RL9_ONYPE 50S ribosomal protein L9 OS=Onion yellows phytoplasma GN=rplI PE=3 SV=2 Length = 849
Score = 31.6 bits (70), Expect = 1.3 Identities = 17/49 (34%), Positives = 25/49 (51%) Frame = +1
Query: 79 LHKRLPASQIWHIVKLHFHCLIKGRQHSGVTRLPNQRQTAFCGYKIATS 225 +H R+ A + I+K H HC I G H+ + L + YKIAT+ Sbjct: 362 VHARINAQNLVDILKKHPHCFIMGHTHTDLDAL----GSVIAFYKIATT 406
>sp|A9KK15|RLMN1_CLOPH Ribosomal RNA large subunit methyltransferase N 1 OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=rlmN1 PE=3 SV=1 Length = 344
Score = 29.3 bits (64), Expect = 6.3 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 2/58 (3%) Frame = -2
Query: 198 CCLPLVRQPSNP--RMLSALD*AMEVELYNMPYLRSWESFMKKRATWISMVCVCVHAC 31 C +P+ Q S ++L +L VE N+ Y + WESF IS C C C Sbjct: 62 CTVPVACQTSGQADKILFSLPDGNRVETVNLHYKKGWESFC------ISSQCGCGFGC 113
>sp|P14336|POLG_TBEVW Genome polyprotein OS=Tick-borne encephalitis virus European subtype (strain Neudoerfl) PE=1 SV=4 Length = 3414
Score = 29.3 bits (64), Expect = 6.3 Identities = 13/17 (76%), Positives = 13/17 (76%) Frame = -3
Query: 299 ASGGRRGGDENRTLADL 249 ASGGRRGG E TL DL Sbjct: 2506 ASGGRRGGSEGDTLGDL 2522
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9SE28 |
Definition |
tr|A9SE28|A9SE28_PHYPA Sin3 complex component OS=Physcomitrella patens subsp. patens |
Align length |
63 |
Score (bit) |
95.9 |
E-value |
9.0e-19 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP916989|Adiantum capillus-veneris mRNA, clone: YMU001_000094_D06. (403 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9SE28|A9SE28_PHYPA Sin3 complex component OS=Physcomitrella ... 96 9e-19 tr|A9NPZ0|A9NPZ0_PICSI Putative uncharacterized protein OS=Picea... 95 1e-18 tr|A8J1N7|A8J1N7_CHLRE Sin3 complex component (Fragment) OS=Chla... 81 3e-14 tr|A7PY56|A7PY56_VITVI Chromosome chr15 scaffold_37, whole genom... 77 4e-13 tr|Q6V9I5|Q6V9I5_SOLCH P18 OS=Solanum chacoense PE=2 SV=1 74 5e-12 tr|B6SJC7|B6SJC7_MAIZE Histone deacetylase complex subunit SAP18... 72 1e-11 tr|B4FIB4|B4FIB4_MAIZE Histone deacetylase complex subunit SAP18... 72 1e-11 tr|Q6ZH90|Q6ZH90_ORYSJ Os02g0122000 protein OS=Oryza sativa subs... 71 2e-11 tr|A2X0A2|A2X0A2_ORYSI Putative uncharacterized protein OS=Oryza... 71 2e-11 tr|B6TJN9|B6TJN9_MAIZE Histone deacetylase complex subunit SAP18... 69 1e-10 tr|A7RY60|A7RY60_NEMVE Predicted protein OS=Nematostella vectens... 57 5e-07 tr|A8Q2P3|A8Q2P3_BRUMA Probable Sin3 associated polypeptide p18,... 57 6e-07 tr|B6P369|B6P369_BRAFL Putative uncharacterized protein OS=Branc... 56 8e-07 tr|Q4SEE6|Q4SEE6_TETNG Chromosome 3 SCAF14622, whole genome shot... 56 1e-06 tr|Q6PC41|Q6PC41_DANRE Sin3-associated polypeptide OS=Danio reri... 55 2e-06 tr|Q28FL5|Q28FL5_XENTR Sin3-associated polypeptide, 18kDa (Sin3A... 55 2e-06 tr|A8XXA8|A8XXA8_CAEBR Putative uncharacterized protein OS=Caeno... 55 2e-06 tr|Q7PR28|Q7PR28_ANOGA AGAP003036-PA OS=Anopheles gambiae GN=AGA... 54 5e-06 tr|Q16GI2|Q16GI2_AEDAE Sap18 OS=Aedes aegypti GN=AAEL014368 PE=4... 53 7e-06 tr|Q09JJ5|Q09JJ5_ARGMO Transcriptional co-repressor component OS... 53 7e-06 tr|B5XE12|B5XE12_SALSA Histone deacetylase complex subunit SAP18... 52 1e-05 tr|B3LZX9|B3LZX9_DROAN GF18851 OS=Drosophila ananassae GN=GF1885... 52 2e-05 tr|Q294V7|Q294V7_DROPS GA19319 OS=Drosophila pseudoobscura pseud... 51 3e-05 tr|B6KIM8|B6KIM8_TOXGO Putative uncharacterized protein OS=Toxop... 51 3e-05 tr|B4PR29|B4PR29_DROYA GE26332 OS=Drosophila yakuba GN=GE26332 P... 51 3e-05 tr|B4GMJ9|B4GMJ9_DROPE GL12401 OS=Drosophila persimilis GN=GL124... 51 3e-05 tr|B3P0Z2|B3P0Z2_DROER GG20135 OS=Drosophila erecta GN=GG20135 P... 51 3e-05 tr|B4QX67|B4QX67_DROSI GD20305 OS=Drosophila simulans GN=GD20305... 50 4e-05 tr|B4NL01|B4NL01_DROWI GK14011 OS=Drosophila willistoni GN=GK140... 50 4e-05 tr|B4HLC7|B4HLC7_DROSE GM25728 OS=Drosophila sechellia GN=GM2572... 50 4e-05
>tr|A9SE28|A9SE28_PHYPA Sin3 complex component OS=Physcomitrella patens subsp. patens GN=HCP1501 PE=4 SV=1 Length = 137
Score = 95.9 bits (237), Expect = 9e-19 Identities = 45/63 (71%), Positives = 55/63 (87%) Frame = -3
Query: 401 VAPAARRKEAKLSFAFVYPDRRGRNVIRNVGLTHASGGRRGGDENRTLADLHFQTGDFLD 222 VAPAAR+++A+LSFAFVYPDR GRNVIR VG+TH++ R GD+ R+LA+L FQTGDFLD Sbjct: 73 VAPAARKRDARLSFAFVYPDRHGRNVIRTVGMTHSTPSARRGDDFRSLAELQFQTGDFLD 132
Query: 221 VAI 213 VAI Sbjct: 133 VAI 135
>tr|A9NPZ0|A9NPZ0_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 150
Score = 95.1 bits (235), Expect = 1e-18 Identities = 49/65 (75%), Positives = 55/65 (84%), Gaps = 1/65 (1%) Frame = -3
Query: 401 VAPAARRKEAKLSFAFVYPDRRGRNVIRNVGLTHASGGRRGGDE-NRTLADLHFQTGDFL 225 VAPAARR++AKLSFAFVYPDRRGRNV+R VG+T+A R DE N+ LADL FQTGDFL Sbjct: 85 VAPAARRRDAKLSFAFVYPDRRGRNVVRQVGVTYAYPNARRPDEGNKALADLSFQTGDFL 144
Query: 224 DVAIL 210 DVAIL Sbjct: 145 DVAIL 149
>tr|A8J1N7|A8J1N7_CHLRE Sin3 complex component (Fragment) OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_104302 PE=4 SV=1 Length = 136
Score = 80.9 bits (198), Expect = 3e-14 Identities = 38/61 (62%), Positives = 50/61 (81%) Frame = -3
Query: 395 PAARRKEAKLSFAFVYPDRRGRNVIRNVGLTHASGGRRGGDENRTLADLHFQTGDFLDVA 216 PAAR + A++SFAFVYPDR+GRNV+R VG+ HA+ R G D+ +TL L+FQTGD+LDV+ Sbjct: 77 PAARARNARMSFAFVYPDRKGRNVMRQVGVVHAT--RPGEDDTKTLRSLNFQTGDYLDVS 134
Query: 215 I 213 I Sbjct: 135 I 135
>tr|A7PY56|A7PY56_VITVI Chromosome chr15 scaffold_37, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00026308001 PE=4 SV=1 Length = 95
Score = 77.0 bits (188), Expect = 4e-13 Identities = 39/64 (60%), Positives = 48/64 (75%) Frame = -3
Query: 401 VAPAARRKEAKLSFAFVYPDRRGRNVIRNVGLTHASGGRRGGDENRTLADLHFQTGDFLD 222 VAPAARR++A LSFAFVYPD GR V+R VG T + G + D+ + LA+L FQ GD+LD Sbjct: 32 VAPAARRRDAILSFAFVYPDTNGRFVLREVGKTFSYGNGKRLDDGKALAELGFQIGDYLD 91
Query: 221 VAIL 210 VAIL Sbjct: 92 VAIL 95
>tr|Q6V9I5|Q6V9I5_SOLCH P18 OS=Solanum chacoense PE=2 SV=1 Length = 156
Score = 73.6 bits (179), Expect = 5e-12 Identities = 38/65 (58%), Positives = 50/65 (76%), Gaps = 1/65 (1%) Frame = -3
Query: 401 VAPAARRKEAKLSFAFVYPDRRGRNVIRNVGLTHA-SGGRRGGDENRTLADLHFQTGDFL 225 VAP ARR++A LSFAFVYPD+RGR V+R VG T + RR + ++TL++L FQ GD+L Sbjct: 90 VAPEARRRDAILSFAFVYPDKRGRFVVREVGTTFSYPNMRRPDNGSKTLSELKFQIGDYL 149
Query: 224 DVAIL 210 DVAI+ Sbjct: 150 DVAIM 154
>tr|B6SJC7|B6SJC7_MAIZE Histone deacetylase complex subunit SAP18 OS=Zea mays PE=2 SV=1 Length = 152
Score = 72.4 bits (176), Expect = 1e-11 Identities = 38/64 (59%), Positives = 48/64 (75%) Frame = -3
Query: 401 VAPAARRKEAKLSFAFVYPDRRGRNVIRNVGLTHASGGRRGGDENRTLADLHFQTGDFLD 222 VA AR++ A+LSFAFVYPD+ GR V+R VG T A G R GD+ +TLA+L FQ GD+L Sbjct: 90 VALPARKRNARLSFAFVYPDKNGRFVVRQVGSTFAYGHGR-GDDAKTLAELGFQIGDYLS 148
Query: 221 VAIL 210 VAI+ Sbjct: 149 VAIM 152
>tr|B4FIB4|B4FIB4_MAIZE Histone deacetylase complex subunit SAP18 OS=Zea mays PE=2 SV=1 Length = 152
Score = 72.4 bits (176), Expect = 1e-11 Identities = 38/64 (59%), Positives = 48/64 (75%) Frame = -3
Query: 401 VAPAARRKEAKLSFAFVYPDRRGRNVIRNVGLTHASGGRRGGDENRTLADLHFQTGDFLD 222 VA AR++ A+LSFAFVYPD+ GR V+R VG T A G R GD+ +TLA+L FQ GD+L Sbjct: 90 VALPARKRNARLSFAFVYPDKNGRFVVRQVGSTFAYGHGR-GDDAKTLAELGFQIGDYLS 148
Query: 221 VAIL 210 VAI+ Sbjct: 149 VAIM 152
>tr|Q6ZH90|Q6ZH90_ORYSJ Os02g0122000 protein OS=Oryza sativa subsp. japonica GN=OJ1020_C02.26 PE=2 SV=1 Length = 152
Score = 71.2 bits (173), Expect = 2e-11 Identities = 37/63 (58%), Positives = 48/63 (76%) Frame = -3
Query: 401 VAPAARRKEAKLSFAFVYPDRRGRNVIRNVGLTHASGGRRGGDENRTLADLHFQTGDFLD 222 VA AAR++ A+LSFAFVYPD+ GR V++ VG T + G R GD+ +TLA+L FQ GD+L Sbjct: 90 VALAARKRNARLSFAFVYPDKHGRFVVKEVGSTFSYGHGR-GDDAKTLAELGFQIGDYLS 148
Query: 221 VAI 213 VAI Sbjct: 149 VAI 151
>tr|A2X0A2|A2X0A2_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_05642 PE=4 SV=1 Length = 152
Score = 71.2 bits (173), Expect = 2e-11 Identities = 37/63 (58%), Positives = 48/63 (76%) Frame = -3
Query: 401 VAPAARRKEAKLSFAFVYPDRRGRNVIRNVGLTHASGGRRGGDENRTLADLHFQTGDFLD 222 VA AAR++ A+LSFAFVYPD+ GR V++ VG T + G R GD+ +TLA+L FQ GD+L Sbjct: 90 VALAARKRNARLSFAFVYPDKHGRFVVKEVGSTFSYGHGR-GDDAKTLAELGFQIGDYLS 148
Query: 221 VAI 213 VAI Sbjct: 149 VAI 151
>tr|B6TJN9|B6TJN9_MAIZE Histone deacetylase complex subunit SAP18 OS=Zea mays PE=2 SV=1 Length = 152
Score = 68.9 bits (167), Expect = 1e-10 Identities = 37/64 (57%), Positives = 47/64 (73%) Frame = -3
Query: 401 VAPAARRKEAKLSFAFVYPDRRGRNVIRNVGLTHASGGRRGGDENRTLADLHFQTGDFLD 222 VA AR++ A+LSFAFVYPD+ GR V+R VG T A R GD+ +TLA+L FQ GD+L Sbjct: 90 VALPARKRNARLSFAFVYPDKNGRFVVRQVGSTFAYCHGR-GDDAKTLAELGFQIGDYLS 148
Query: 221 VAIL 210 VAI+ Sbjct: 149 VAIM 152
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