BP916989
Clone id YMU001_000094_D06
Library
Length 403
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000094_D06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
AAGAGATAAATACCATATTAGAATGCACACGCAGGCGTGCACACACACACACACCATGCT
TATCCAAGTAGCCCTTTTCTTCATAAAAGACTCCCAGCTTCTCAAATATGGCATATTGTA
AAGCTCCACTTCCATTGCCTAATCAAGGGCAGACAGCATTCTGGGGTTACTAGGTTGCCT
AACCAGAGGCAGACAGCATTCTGCGGCTACAAGATTGCTACATCCAAAAAATCTCCTGTT
TGAAAGTGAAGATCAGCGAGCGTCCGATTTTCATCTCCACCTCTCCTGCCCCCACTAGCA
TGAGTCAGACCTACGTTGCGGATGACATTACGGCCCCGGCGATCTGGATAAACGAAAGCA
AAAGAGAGTTTGGCTTCTTTGCGTCTTGCTGCAGGAGCAACTT
■■Homology search results ■■ -
sp_hit_id O64644
Definition sp|O64644|SAP18_ARATH Histone deacetylase complex subunit SAP18 OS=Arabidopsis thaliana
Align length 63
Score (bit) 67.4
E-value 2.0e-11
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916989|Adiantum capillus-veneris mRNA, clone:
YMU001_000094_D06.
(403 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|O64644|SAP18_ARATH Histone deacetylase complex subunit SAP18 ... 67 2e-11
sp|Q09250|SAP18_CAEEL Probable histone deacetylase complex subun... 54 3e-07
sp|Q9VEX9|SAP18_DROME Histone deacetylase complex subunit SAP18 ... 50 3e-06
sp|Q5RDT5|SAP18_PONAB Histone deacetylase complex subunit SAP18 ... 49 8e-06
sp|O00422|SAP18_HUMAN Histone deacetylase complex subunit SAP18 ... 49 8e-06
sp|Q3T022|SAP18_BOVIN Histone deacetylase complex subunit SAP18 ... 49 8e-06
sp|O55128|SAP18_MOUSE Histone deacetylase complex subunit SAP18 ... 49 1e-05
sp|Q6YRK2|RL9_ONYPE 50S ribosomal protein L9 OS=Onion yellows ph... 32 1.3
sp|A9KK15|RLMN1_CLOPH Ribosomal RNA large subunit methyltransfer... 29 6.3
sp|P14336|POLG_TBEVW Genome polyprotein OS=Tick-borne encephalit... 29 6.3
sp|Q01299|POLG_TBEVH Genome polyprotein OS=Tick-borne encephalit... 29 6.3
sp|Q876F5|SC242_SACBA Protein transport protein SEC24-2 OS=Sacch... 29 8.3

>sp|O64644|SAP18_ARATH Histone deacetylase complex subunit SAP18
OS=Arabidopsis thaliana GN=At2g45640 PE=1 SV=1
Length = 152

Score = 67.4 bits (163), Expect = 2e-11
Identities = 33/63 (52%), Positives = 47/63 (74%)
Frame = -3

Query: 401 VAPAARRKEAKLSFAFVYPDRRGRNVIRNVGLTHASGGRRGGDENRTLADLHFQTGDFLD 222
V+ AARR+ A+LSFAFVYP+ +G +R VG T A R+ D+++TL++L F+ GD+LD
Sbjct: 89 VSVAARRRNARLSFAFVYPNNKGGYNVREVGETMAYPNRKQPDDSKTLSELPFEIGDYLD 148

Query: 221 VAI 213
VAI
Sbjct: 149 VAI 151


>sp|Q09250|SAP18_CAEEL Probable histone deacetylase complex subunit
SAP18 OS=Caenorhabditis elegans GN=C16C10.4 PE=2 SV=1
Length = 166

Score = 53.5 bits (127), Expect = 3e-07
Identities = 32/67 (47%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Frame = -3

Query: 401 VAPAARRKEAKLSFAFVYPDRRG-RNVIRNVGLTHASGGRRGGDENRTLADLHFQTGDFL 225
V P ARRK FA V DR R ++R+VG T + G RG D+N+TL F+ GDF+
Sbjct: 76 VNPDARRKGTTFDFAIVQADRGSPRYILRDVGNT--TNGERGIDDNKTLQQCKFEVGDFV 133

Query: 224 DVAIL*P 204
DVAI P
Sbjct: 134 DVAISLP 140


>sp|Q9VEX9|SAP18_DROME Histone deacetylase complex subunit SAP18
OS=Drosophila melanogaster GN=Bin1 PE=1 SV=1
Length = 150

Score = 50.4 bits (119), Expect = 3e-06
Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Frame = -3

Query: 401 VAPAARRKEAKLSFAFVYPDRRGRNV-IRNVGLTHASGGRRGGDENRTLADLHFQTGDFL 225
V P R+K FA VYP+ R + +R +G+T G++G D+N+TLA F GDFL
Sbjct: 73 VNPDTRKKGTYFDFAVVYPNFRSNHFQMREIGVTCT--GQKGIDDNKTLAQAKFSIGDFL 130

Query: 224 DVAIL*P 204
D++I P
Sbjct: 131 DISITPP 137


>sp|Q5RDT5|SAP18_PONAB Histone deacetylase complex subunit SAP18
OS=Pongo abelii GN=SAP18 PE=2 SV=1
Length = 153

Score = 48.9 bits (115), Expect = 8e-06
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Frame = -3

Query: 401 VAPAARRKEAKLSFAFVYPD-RRGRNVIRNVGLTHASGGRRGGDENRTLADLHFQTGDFL 225
V P AR+K +FA V+ D +R ++ +G T + GR+G D++ TL FQ GD+L
Sbjct: 76 VYPEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMS--GRKGTDDSMTLQSQKFQIGDYL 133

Query: 224 DVAIL*PQNA 195
D+AI P A
Sbjct: 134 DIAITPPNRA 143


>sp|O00422|SAP18_HUMAN Histone deacetylase complex subunit SAP18
OS=Homo sapiens GN=SAP18 PE=1 SV=1
Length = 153

Score = 48.9 bits (115), Expect = 8e-06
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Frame = -3

Query: 401 VAPAARRKEAKLSFAFVYPD-RRGRNVIRNVGLTHASGGRRGGDENRTLADLHFQTGDFL 225
V P AR+K +FA V+ D +R ++ +G T + GR+G D++ TL FQ GD+L
Sbjct: 76 VYPEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMS--GRKGTDDSMTLQSQKFQIGDYL 133

Query: 224 DVAIL*PQNA 195
D+AI P A
Sbjct: 134 DIAITPPNRA 143


>sp|Q3T022|SAP18_BOVIN Histone deacetylase complex subunit SAP18
OS=Bos taurus GN=SAP18 PE=2 SV=1
Length = 153

Score = 48.9 bits (115), Expect = 8e-06
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Frame = -3

Query: 401 VAPAARRKEAKLSFAFVYPD-RRGRNVIRNVGLTHASGGRRGGDENRTLADLHFQTGDFL 225
V P AR+K +FA V+ D +R ++ +G T + GR+G D++ TL FQ GD+L
Sbjct: 76 VYPEARKKGTHFNFAIVFTDLKRPGYRVKEIGSTMS--GRKGTDDSMTLQSQKFQIGDYL 133

Query: 224 DVAIL*PQNA 195
D+AI P A
Sbjct: 134 DIAITPPNRA 143


>sp|O55128|SAP18_MOUSE Histone deacetylase complex subunit SAP18
OS=Mus musculus GN=Sap18 PE=2 SV=1
Length = 153

Score = 48.5 bits (114), Expect = 1e-05
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Frame = -3

Query: 401 VAPAARRKEAKLSFAFVYPD-RRGRNVIRNVGLTHASGGRRGGDENRTLADLHFQTGDFL 225
V P AR+K +FA V+ D +R ++ +G T + GR+G D++ TL FQ GD+L
Sbjct: 76 VYPEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMS--GRKGTDDSMTLQSQKFQIGDYL 133

Query: 224 DVAIL*PQNA 195
D+AI P A
Sbjct: 134 DIAITPPNRA 143


>sp|Q6YRK2|RL9_ONYPE 50S ribosomal protein L9 OS=Onion yellows
phytoplasma GN=rplI PE=3 SV=2
Length = 849

Score = 31.6 bits (70), Expect = 1.3
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +1

Query: 79 LHKRLPASQIWHIVKLHFHCLIKGRQHSGVTRLPNQRQTAFCGYKIATS 225
+H R+ A + I+K H HC I G H+ + L + YKIAT+
Sbjct: 362 VHARINAQNLVDILKKHPHCFIMGHTHTDLDAL----GSVIAFYKIATT 406


>sp|A9KK15|RLMN1_CLOPH Ribosomal RNA large subunit methyltransferase
N 1 OS=Clostridium phytofermentans (strain ATCC 700394 /
DSM 18823 / ISDg) GN=rlmN1 PE=3 SV=1
Length = 344

Score = 29.3 bits (64), Expect = 6.3
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = -2

Query: 198 CCLPLVRQPSNP--RMLSALD*AMEVELYNMPYLRSWESFMKKRATWISMVCVCVHAC 31
C +P+ Q S ++L +L VE N+ Y + WESF IS C C C
Sbjct: 62 CTVPVACQTSGQADKILFSLPDGNRVETVNLHYKKGWESFC------ISSQCGCGFGC 113


>sp|P14336|POLG_TBEVW Genome polyprotein OS=Tick-borne encephalitis
virus European subtype (strain Neudoerfl) PE=1 SV=4
Length = 3414

Score = 29.3 bits (64), Expect = 6.3
Identities = 13/17 (76%), Positives = 13/17 (76%)
Frame = -3

Query: 299 ASGGRRGGDENRTLADL 249
ASGGRRGG E TL DL
Sbjct: 2506 ASGGRRGGSEGDTLGDL 2522


tr_hit_id A9SE28
Definition tr|A9SE28|A9SE28_PHYPA Sin3 complex component OS=Physcomitrella patens subsp. patens
Align length 63
Score (bit) 95.9
E-value 9.0e-19
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP916989|Adiantum capillus-veneris mRNA, clone:
YMU001_000094_D06.
(403 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9SE28|A9SE28_PHYPA Sin3 complex component OS=Physcomitrella ... 96 9e-19
tr|A9NPZ0|A9NPZ0_PICSI Putative uncharacterized protein OS=Picea... 95 1e-18
tr|A8J1N7|A8J1N7_CHLRE Sin3 complex component (Fragment) OS=Chla... 81 3e-14
tr|A7PY56|A7PY56_VITVI Chromosome chr15 scaffold_37, whole genom... 77 4e-13
tr|Q6V9I5|Q6V9I5_SOLCH P18 OS=Solanum chacoense PE=2 SV=1 74 5e-12
tr|B6SJC7|B6SJC7_MAIZE Histone deacetylase complex subunit SAP18... 72 1e-11
tr|B4FIB4|B4FIB4_MAIZE Histone deacetylase complex subunit SAP18... 72 1e-11
tr|Q6ZH90|Q6ZH90_ORYSJ Os02g0122000 protein OS=Oryza sativa subs... 71 2e-11
tr|A2X0A2|A2X0A2_ORYSI Putative uncharacterized protein OS=Oryza... 71 2e-11
tr|B6TJN9|B6TJN9_MAIZE Histone deacetylase complex subunit SAP18... 69 1e-10
tr|A7RY60|A7RY60_NEMVE Predicted protein OS=Nematostella vectens... 57 5e-07
tr|A8Q2P3|A8Q2P3_BRUMA Probable Sin3 associated polypeptide p18,... 57 6e-07
tr|B6P369|B6P369_BRAFL Putative uncharacterized protein OS=Branc... 56 8e-07
tr|Q4SEE6|Q4SEE6_TETNG Chromosome 3 SCAF14622, whole genome shot... 56 1e-06
tr|Q6PC41|Q6PC41_DANRE Sin3-associated polypeptide OS=Danio reri... 55 2e-06
tr|Q28FL5|Q28FL5_XENTR Sin3-associated polypeptide, 18kDa (Sin3A... 55 2e-06
tr|A8XXA8|A8XXA8_CAEBR Putative uncharacterized protein OS=Caeno... 55 2e-06
tr|Q7PR28|Q7PR28_ANOGA AGAP003036-PA OS=Anopheles gambiae GN=AGA... 54 5e-06
tr|Q16GI2|Q16GI2_AEDAE Sap18 OS=Aedes aegypti GN=AAEL014368 PE=4... 53 7e-06
tr|Q09JJ5|Q09JJ5_ARGMO Transcriptional co-repressor component OS... 53 7e-06
tr|B5XE12|B5XE12_SALSA Histone deacetylase complex subunit SAP18... 52 1e-05
tr|B3LZX9|B3LZX9_DROAN GF18851 OS=Drosophila ananassae GN=GF1885... 52 2e-05
tr|Q294V7|Q294V7_DROPS GA19319 OS=Drosophila pseudoobscura pseud... 51 3e-05
tr|B6KIM8|B6KIM8_TOXGO Putative uncharacterized protein OS=Toxop... 51 3e-05
tr|B4PR29|B4PR29_DROYA GE26332 OS=Drosophila yakuba GN=GE26332 P... 51 3e-05
tr|B4GMJ9|B4GMJ9_DROPE GL12401 OS=Drosophila persimilis GN=GL124... 51 3e-05
tr|B3P0Z2|B3P0Z2_DROER GG20135 OS=Drosophila erecta GN=GG20135 P... 51 3e-05
tr|B4QX67|B4QX67_DROSI GD20305 OS=Drosophila simulans GN=GD20305... 50 4e-05
tr|B4NL01|B4NL01_DROWI GK14011 OS=Drosophila willistoni GN=GK140... 50 4e-05
tr|B4HLC7|B4HLC7_DROSE GM25728 OS=Drosophila sechellia GN=GM2572... 50 4e-05

>tr|A9SE28|A9SE28_PHYPA Sin3 complex component OS=Physcomitrella
patens subsp. patens GN=HCP1501 PE=4 SV=1
Length = 137

Score = 95.9 bits (237), Expect = 9e-19
Identities = 45/63 (71%), Positives = 55/63 (87%)
Frame = -3

Query: 401 VAPAARRKEAKLSFAFVYPDRRGRNVIRNVGLTHASGGRRGGDENRTLADLHFQTGDFLD 222
VAPAAR+++A+LSFAFVYPDR GRNVIR VG+TH++ R GD+ R+LA+L FQTGDFLD
Sbjct: 73 VAPAARKRDARLSFAFVYPDRHGRNVIRTVGMTHSTPSARRGDDFRSLAELQFQTGDFLD 132

Query: 221 VAI 213
VAI
Sbjct: 133 VAI 135


>tr|A9NPZ0|A9NPZ0_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 150

Score = 95.1 bits (235), Expect = 1e-18
Identities = 49/65 (75%), Positives = 55/65 (84%), Gaps = 1/65 (1%)
Frame = -3

Query: 401 VAPAARRKEAKLSFAFVYPDRRGRNVIRNVGLTHASGGRRGGDE-NRTLADLHFQTGDFL 225
VAPAARR++AKLSFAFVYPDRRGRNV+R VG+T+A R DE N+ LADL FQTGDFL
Sbjct: 85 VAPAARRRDAKLSFAFVYPDRRGRNVVRQVGVTYAYPNARRPDEGNKALADLSFQTGDFL 144

Query: 224 DVAIL 210
DVAIL
Sbjct: 145 DVAIL 149


>tr|A8J1N7|A8J1N7_CHLRE Sin3 complex component (Fragment)
OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_104302 PE=4
SV=1
Length = 136

Score = 80.9 bits (198), Expect = 3e-14
Identities = 38/61 (62%), Positives = 50/61 (81%)
Frame = -3

Query: 395 PAARRKEAKLSFAFVYPDRRGRNVIRNVGLTHASGGRRGGDENRTLADLHFQTGDFLDVA 216
PAAR + A++SFAFVYPDR+GRNV+R VG+ HA+ R G D+ +TL L+FQTGD+LDV+
Sbjct: 77 PAARARNARMSFAFVYPDRKGRNVMRQVGVVHAT--RPGEDDTKTLRSLNFQTGDYLDVS 134

Query: 215 I 213
I
Sbjct: 135 I 135


>tr|A7PY56|A7PY56_VITVI Chromosome chr15 scaffold_37, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00026308001
PE=4 SV=1
Length = 95

Score = 77.0 bits (188), Expect = 4e-13
Identities = 39/64 (60%), Positives = 48/64 (75%)
Frame = -3

Query: 401 VAPAARRKEAKLSFAFVYPDRRGRNVIRNVGLTHASGGRRGGDENRTLADLHFQTGDFLD 222
VAPAARR++A LSFAFVYPD GR V+R VG T + G + D+ + LA+L FQ GD+LD
Sbjct: 32 VAPAARRRDAILSFAFVYPDTNGRFVLREVGKTFSYGNGKRLDDGKALAELGFQIGDYLD 91

Query: 221 VAIL 210
VAIL
Sbjct: 92 VAIL 95


>tr|Q6V9I5|Q6V9I5_SOLCH P18 OS=Solanum chacoense PE=2 SV=1
Length = 156

Score = 73.6 bits (179), Expect = 5e-12
Identities = 38/65 (58%), Positives = 50/65 (76%), Gaps = 1/65 (1%)
Frame = -3

Query: 401 VAPAARRKEAKLSFAFVYPDRRGRNVIRNVGLTHA-SGGRRGGDENRTLADLHFQTGDFL 225
VAP ARR++A LSFAFVYPD+RGR V+R VG T + RR + ++TL++L FQ GD+L
Sbjct: 90 VAPEARRRDAILSFAFVYPDKRGRFVVREVGTTFSYPNMRRPDNGSKTLSELKFQIGDYL 149

Query: 224 DVAIL 210
DVAI+
Sbjct: 150 DVAIM 154


>tr|B6SJC7|B6SJC7_MAIZE Histone deacetylase complex subunit SAP18
OS=Zea mays PE=2 SV=1
Length = 152

Score = 72.4 bits (176), Expect = 1e-11
Identities = 38/64 (59%), Positives = 48/64 (75%)
Frame = -3

Query: 401 VAPAARRKEAKLSFAFVYPDRRGRNVIRNVGLTHASGGRRGGDENRTLADLHFQTGDFLD 222
VA AR++ A+LSFAFVYPD+ GR V+R VG T A G R GD+ +TLA+L FQ GD+L
Sbjct: 90 VALPARKRNARLSFAFVYPDKNGRFVVRQVGSTFAYGHGR-GDDAKTLAELGFQIGDYLS 148

Query: 221 VAIL 210
VAI+
Sbjct: 149 VAIM 152


>tr|B4FIB4|B4FIB4_MAIZE Histone deacetylase complex subunit SAP18
OS=Zea mays PE=2 SV=1
Length = 152

Score = 72.4 bits (176), Expect = 1e-11
Identities = 38/64 (59%), Positives = 48/64 (75%)
Frame = -3

Query: 401 VAPAARRKEAKLSFAFVYPDRRGRNVIRNVGLTHASGGRRGGDENRTLADLHFQTGDFLD 222
VA AR++ A+LSFAFVYPD+ GR V+R VG T A G R GD+ +TLA+L FQ GD+L
Sbjct: 90 VALPARKRNARLSFAFVYPDKNGRFVVRQVGSTFAYGHGR-GDDAKTLAELGFQIGDYLS 148

Query: 221 VAIL 210
VAI+
Sbjct: 149 VAIM 152


>tr|Q6ZH90|Q6ZH90_ORYSJ Os02g0122000 protein OS=Oryza sativa subsp.
japonica GN=OJ1020_C02.26 PE=2 SV=1
Length = 152

Score = 71.2 bits (173), Expect = 2e-11
Identities = 37/63 (58%), Positives = 48/63 (76%)
Frame = -3

Query: 401 VAPAARRKEAKLSFAFVYPDRRGRNVIRNVGLTHASGGRRGGDENRTLADLHFQTGDFLD 222
VA AAR++ A+LSFAFVYPD+ GR V++ VG T + G R GD+ +TLA+L FQ GD+L
Sbjct: 90 VALAARKRNARLSFAFVYPDKHGRFVVKEVGSTFSYGHGR-GDDAKTLAELGFQIGDYLS 148

Query: 221 VAI 213
VAI
Sbjct: 149 VAI 151


>tr|A2X0A2|A2X0A2_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_05642 PE=4 SV=1
Length = 152

Score = 71.2 bits (173), Expect = 2e-11
Identities = 37/63 (58%), Positives = 48/63 (76%)
Frame = -3

Query: 401 VAPAARRKEAKLSFAFVYPDRRGRNVIRNVGLTHASGGRRGGDENRTLADLHFQTGDFLD 222
VA AAR++ A+LSFAFVYPD+ GR V++ VG T + G R GD+ +TLA+L FQ GD+L
Sbjct: 90 VALAARKRNARLSFAFVYPDKHGRFVVKEVGSTFSYGHGR-GDDAKTLAELGFQIGDYLS 148

Query: 221 VAI 213
VAI
Sbjct: 149 VAI 151


>tr|B6TJN9|B6TJN9_MAIZE Histone deacetylase complex subunit SAP18
OS=Zea mays PE=2 SV=1
Length = 152

Score = 68.9 bits (167), Expect = 1e-10
Identities = 37/64 (57%), Positives = 47/64 (73%)
Frame = -3

Query: 401 VAPAARRKEAKLSFAFVYPDRRGRNVIRNVGLTHASGGRRGGDENRTLADLHFQTGDFLD 222
VA AR++ A+LSFAFVYPD+ GR V+R VG T A R GD+ +TLA+L FQ GD+L
Sbjct: 90 VALPARKRNARLSFAFVYPDKNGRFVVRQVGSTFAYCHGR-GDDAKTLAELGFQIGDYLS 148

Query: 221 VAIL 210
VAI+
Sbjct: 149 VAIM 152