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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916991
Clone id YMU001_000094_D08
Library
Length 369
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000094_D08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTACTCCGACACATTGCACCATGTTTCAAATAGTTTTAGTTGTTACAACGATGATGATCC
CAAAATGGCACAGATGGTTAATTCTACAAAAAATAAGCTTTTGCTTTGCTTAGCAAAGTG
TGCATGTTGGTCAATGCTTGCTCCTCAACCGAGTTCCGCTCAATGTGCTCAGTTGAACTT
AAAAGAGGAACTCTTCACAAAATTTTGGAGTGCCTCATTTTTCGCACCTATACTGTGTTT
AATGATGTACTGGCCTGAAAAGGGTGATGACCCAACAAGGCATCAATTGAAAAATGTGGG
TACTAGATTACAATTCATCATGAGGGCCCTCTCCTTGATTGCGCAACCGCTGTTCCAATC
CTTTTAGCC
■■Homology search results ■■ -
sp_hit_id Q28I33
Definition sp|Q28I33|GL8D1_XENTR Glycosyltransferase 8 domain-containing protein 1 OS=Xenopus tropicalis
Align length 38
Score (bit) 30.0
E-value 3.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916991|Adiantum capillus-veneris mRNA, clone:
YMU001_000094_D08.
         (369 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q28I33|GL8D1_XENTR Glycosyltransferase 8 domain-containing pr...    30   3.7  
sp|Q9TYV2|SMSR2_CAEEL Sphingomyelin synthase-related 2 OS=Caenor...    30   4.9  

>sp|Q28I33|GL8D1_XENTR Glycosyltransferase 8 domain-containing
           protein 1 OS=Xenopus tropicalis GN=glt8d1 PE=2 SV=1
          Length = 371

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +2

Query: 170 QLNLKEELFTKFWSASFFAPILCLMMYWPEKGDDPTRH 283
           +L++ EEL++K  SAS  AP L ++ Y      DP  H
Sbjct: 267 ELDVAEELYSKTLSASITAPPLLIVFYQRHSNLDPLWH 304


>sp|Q9TYV2|SMSR2_CAEEL Sphingomyelin synthase-related 2
           OS=Caenorhabditis elegans GN=W07E6.3 PE=2 SV=1
          Length = 381

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 11/47 (23%), Positives = 25/47 (53%)
 Frame = +3

Query: 21  MFQIVLVVTTMMIPKWHRWLILQKISFCFA*QSVHVGQCLLLNRVPL 161
           M  +++    +M    HRW++++++ FC A        C+ + +VP+
Sbjct: 161 MMILLISALLVMFTHQHRWIVIRRVFFCIAMAYSFRALCVTIFQVPV 207
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916991|Adiantum capillus-veneris mRNA, clone:
YMU001_000094_D08.
         (369 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******