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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP916995
Clone id YMU001_000094_E03
Library
Length 499
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000094_E03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ACAATCCTTGACCTTGACCACATAGCAATCAACCAAGGTCTACCCAATATAACTGGATAT
GCCCCAAGCTTTGCAGGCATCACATGAATGTCCATGACAGCCCTTTGACCCAAAACATTA
AGCTCCAAGTATGAATAACTCCCAAGCATTTCACTCTACTACTATTTGCCATCTTCACAC
TGAACAAGGATTTGCGTGTGAGCTGAGATCCCAATTGCTGCATTGTTTCCTCTGTCATAA
CGCACACTTGGGCTCCACCATCCATGTGCGCCTTATTCACCCTCCTTCCATGTATCCAAA
CATCAACCCCACAGGCAAAACATCAGTAACTTTATGAAGTTGCACTACGTGTGCATCGCG
TGTCTTTACCTTCACCCTTCTAACACTAGCTAGTTTATGCCAGTGCCTTCTCATACTTGA
GCTCAAATGCAAGAGTTGCCCATATGATACGTCTGCCCTCTTGTTCTTCAAGTCTTCTAA
GAGATTGTATGCTGATTGA
■■Homology search results ■■ -
sp_hit_id P41273
Definition sp|P41273|TNFL9_HUMAN Tumor necrosis factor ligand superfamily member 9 OS=Homo sapiens
Align length 48
Score (bit) 32.7
E-value 0.85
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916995|Adiantum capillus-veneris mRNA, clone:
YMU001_000094_E03.
         (475 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P41273|TNFL9_HUMAN Tumor necrosis factor ligand superfamily m...    33   0.85 
sp|Q5RGE5|DCR1C_DANRE Protein artemis OS=Danio rerio GN=dclre1c ...    30   4.2  

>sp|P41273|TNFL9_HUMAN Tumor necrosis factor ligand superfamily
           member 9 OS=Homo sapiens GN=TNFSF9 PE=2 SV=1
          Length = 254

 Score = 32.7 bits (73), Expect = 0.85
 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = -2

Query: 417 GQLLHLSSSMRR--HWHKLASVRRVKVKTRDAHVVQLHKVTDVLPVGL 280
           G+LLHLS+  R   H H  A  R     T+ A V+ L +VT  +P GL
Sbjct: 201 GRLLHLSAGQRLGVHLHTEARARHAWQLTQGATVLGLFRVTPEIPAGL 248


>sp|Q5RGE5|DCR1C_DANRE Protein artemis OS=Danio rerio GN=dclre1c
           PE=2 SV=1
          Length = 639

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 200 CFLCHNAHLGSTIHVRLIHPPSMYPNINPTGKT 298
           CF  H+++L     +  I P ++YPN+ P GKT
Sbjct: 315 CFSFHSSYLEVKDFLSYICPVNIYPNVIPLGKT 347
tr_hit_id A8ND48
Definition tr|A8ND48|A8ND48_COPC7 Putative uncharacterized protein OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003)
Align length 58
Score (bit) 34.3
E-value 0.11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP916995|Adiantum capillus-veneris mRNA, clone:
YMU001_000094_E03.
         (475 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8ND48|A8ND48_COPC7 Putative uncharacterized protein OS=Copri...    34   0.11 
tr|A9RCJ2|A9RCJ2_PHYPA Predicted protein OS=Physcomitrella paten...    37   0.64 
tr|A9RMH3|A9RMH3_PHYPA Predicted protein OS=Physcomitrella paten...    36   1.1  
tr|A9SFK8|A9SFK8_PHYPA Predicted protein OS=Physcomitrella paten...    35   1.9  
tr|A9SC17|A9SC17_PHYPA Predicted protein OS=Physcomitrella paten...    35   2.4  
tr|A5B8Q5|A5B8Q5_VITVI Putative uncharacterized protein OS=Vitis...    31   3.9  
tr|A9TCC5|A9TCC5_PHYPA Predicted protein OS=Physcomitrella paten...    34   4.2  
tr|A9T0Z8|A9T0Z8_PHYPA Predicted protein OS=Physcomitrella paten...    34   4.2  
tr|A9TSQ6|A9TSQ6_PHYPA Predicted protein OS=Physcomitrella paten...    33   5.4  
tr|A5ACK9|A5ACK9_VITVI Putative uncharacterized protein OS=Vitis...    27   6.5  
tr|Q0JEJ1|Q0JEJ1_ORYSJ Os04g0262800 protein OS=Oryza sativa subs...    27   6.6  
tr|Q7X7I2|Q7X7I2_ORYSJ OSJNBb0069N01.1 protein (OSJNBa0013A04.20...    27   6.6  
tr|A6FGV7|A6FGV7_9GAMM LysR-family transcriptional regulator OS=...    33   7.1  
tr|A5AL37|A5AL37_VITVI Putative uncharacterized protein OS=Vitis...    27   8.4  
tr|B2RA14|B2RA14_HUMAN cDNA, FLJ94653, highly similar to Homo sa...    33   9.2  

>tr|A8ND48|A8ND48_COPC7 Putative uncharacterized protein
           OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC
           9003) GN=CC1G_08526 PE=4 SV=1
          Length = 1312

 Score = 34.3 bits (77), Expect(2) = 0.11
 Identities = 15/58 (25%), Positives = 34/58 (58%)
 Frame = -1

Query: 283 VDVWIHGRRVNKAHMDGGAQVCVMTEETMQQLGSQLTRKSLFSVKMANSSRVKCLGVI 110
           +DV+++GRR   A +D G+++ V+      +LG ++  K   +++ AN ++   +G +
Sbjct: 199 IDVFVNGRRTLTATLDDGSELVVIRLAKAVELGLEINYKRRLTMEAANGTQGSMVGCV 256



 Score = 23.9 bits (50), Expect(2) = 0.11
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -3

Query: 125 MLGSYSYLELNVLGQRAVMDIHVMPAKLGAYPVILGRPW 9
           M+G   ++E+ V G +     H    +   Y ++LGRPW
Sbjct: 252 MVGCVEWMEIVVDGVKTWA--HAFVIEDAPYDLLLGRPW 288


>tr|A9RCJ2|A9RCJ2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_64543 PE=4 SV=1
          Length = 653

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 21/61 (34%), Positives = 34/61 (55%)
 Frame = -2

Query: 465 YNLLEDLKNKRADVSYGQLLHLSSSMRRHWHKLASVRRVKVKTRDAHVVQLHKVTDVLPV 286
           Y+L  DL+  +AD+S  QLL +S  MR+ + K     + K KT+   V    +V D++ +
Sbjct: 556 YDLWRDLRKIKADISIAQLLEISPLMRKSFKKGLPRAKRKKKTQKRTVA---RVVDIISI 612

Query: 285 G 283
           G
Sbjct: 613 G 613


>tr|A9RMH3|A9RMH3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_159976 PE=4 SV=1
          Length = 453

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 21/61 (34%), Positives = 33/61 (54%)
 Frame = -2

Query: 465 YNLLEDLKNKRADVSYGQLLHLSSSMRRHWHKLASVRRVKVKTRDAHVVQLHKVTDVLPV 286
           Y+L  DL+  +AD+S G LL +S  MR+ + +     + K KT+   V    KV D + +
Sbjct: 331 YDLWRDLRRIKADISIGHLLEISPLMRKSFKEGLPRAKKKKKTQKRTVA---KVVDTISI 387

Query: 285 G 283
           G
Sbjct: 388 G 388


>tr|A9SFK8|A9SFK8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_229324 PE=4 SV=1
          Length = 801

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 20/63 (31%), Positives = 35/63 (55%)
 Frame = -2

Query: 465 YNLLEDLKNKRADVSYGQLLHLSSSMRRHWHKLASVRRVKVKTRDAHVVQLHKVTDVLPV 286
           Y+L  DL+  +AD+S  QLL +S  MR+ + +     + K KT+   V + H++  +L  
Sbjct: 479 YDLWRDLRRIKADISIAQLLEISPLMRKSFKERLPRAKRKKKTKKRTVAK-HQIPTILTK 537

Query: 285 GLM 277
            L+
Sbjct: 538 NLI 540


>tr|A9SC17|A9SC17_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_77319 PE=4 SV=1
          Length = 613

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
 Frame = -2

Query: 465 YNLLEDLKNKRADVSYGQLLHLSSSMRRHWHKLASVRRVKVKTRDAHVVQLH------KV 304
           Y+L  DL+  +AD+S  QLL +S  MR+ + +  S  + K KT+   V ++        V
Sbjct: 482 YDLWRDLRRIKADISIAQLLEISPLMRKSFKEGLSRAKRKKKTQKRTVARIQASIRPVDV 541

Query: 303 TDVLPVG 283
            D + +G
Sbjct: 542 VDTISIG 548


>tr|A5B8Q5|A5B8Q5_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_007856 PE=4 SV=1
          Length = 1801

 Score = 30.8 bits (68), Expect(2) = 3.9
 Identities = 19/58 (32%), Positives = 32/58 (55%)
 Frame = -1

Query: 283 VDVWIHGRRVNKAHMDGGAQVCVMTEETMQQLGSQLTRKSLFSVKMANSSRVKCLGVI 110
           + V I G+ V KA +D GA V ++     +QLG +  +++  ++ +AN S     GVI
Sbjct: 675 ISVMIGGKVVEKALLDLGASVNLLPYSVYKQLGLRELKQTSITLSLANRSVKIPRGVI 732



 Score = 21.9 bits (45), Expect(2) = 3.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 74  VMDIHVMPAKLGAYPVILGRPWL 6
           V+D +    +    P+ILGRP+L
Sbjct: 750 VLDTNPFVKEANYVPIILGRPFL 772


>tr|A9TCC5|A9TCC5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_90916 PE=4 SV=1
          Length = 463

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 20/61 (32%), Positives = 33/61 (54%)
 Frame = -2

Query: 465 YNLLEDLKNKRADVSYGQLLHLSSSMRRHWHKLASVRRVKVKTRDAHVVQLHKVTDVLPV 286
           Y+L  DL+  +AD+S  QLL +S  MR+ + +     + K KT+   V    +V D + +
Sbjct: 341 YDLWRDLRRIKADISIAQLLEISPLMRKSFKEGLPRAKRKKKTQKRTVT---RVVDTISI 397

Query: 285 G 283
           G
Sbjct: 398 G 398


>tr|A9T0Z8|A9T0Z8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_232033 PE=4 SV=1
          Length = 789

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 20/61 (32%), Positives = 33/61 (54%)
 Frame = -2

Query: 465 YNLLEDLKNKRADVSYGQLLHLSSSMRRHWHKLASVRRVKVKTRDAHVVQLHKVTDVLPV 286
           Y+L  DL+  +AD+S  QLL +S  MR+ + +     + K KT+   V    +V D + +
Sbjct: 638 YDLWRDLRRIKADISIAQLLEISPLMRKSFKEGLPRAKRKKKTQKRTVA---RVVDTISI 694

Query: 285 G 283
           G
Sbjct: 695 G 695


>tr|A9TSQ6|A9TSQ6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_96645 PE=4 SV=1
          Length = 539

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 21/63 (33%), Positives = 35/63 (55%)
 Frame = -2

Query: 465 YNLLEDLKNKRADVSYGQLLHLSSSMRRHWHKLASVRRVKVKTRDAHVVQLHKVTDVLPV 286
           Y+L  DL+  +AD+S  QLL +S  MR+ + +     + K+K +   V +L  V D+   
Sbjct: 462 YDLWRDLRRIKADISIAQLLEISRLMRKSFKEGLPKAKRKMKIQKRTVARL--VIDINVS 519

Query: 285 GLM 277
           GL+
Sbjct: 520 GLL 522


>tr|A5ACK9|A5ACK9_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_040891 PE=4 SV=1
          Length = 1736

 Score = 26.6 bits (57), Expect(2) = 6.5
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = -1

Query: 283 VDVWIHGRRVNKAHMDGGAQVCVMTEETMQQLGSQLTRKSLFSVKMANSS 134
           + V I G+ V KA +D GA V ++     +QLG    + +  ++ +A+ S
Sbjct: 673 ISVMIGGKVVEKALLDLGASVNLLPYSVYKQLGVGELKPTSITLSLADRS 722



 Score = 25.4 bits (54), Expect(2) = 6.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 74  VMDIHVMPAKLGAYPVILGRPWL 6
           V+D H +  +    P+ILGRP+L
Sbjct: 748 VLDTHPLVKEANYVPIILGRPFL 770