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NBDC - LSDB Archive
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BP917000
Clone id YMU001_000094_E08
Library
Length 495
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000094_E08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTCTTTGCTGCGCCCTCGCCATGACCTGTTGCACTGCCTGCGCGCGCCCAGCTACCTGCG
CGCAGCCTGTCTCGCGCGCCTAAATACTTGCGCGCATCATTTTTTAGGCTTTCGTTTTTG
GGCCTGCCTGCGCGCATTCCCACTGCCCCTGCCGGTCAAGTTCTTCTCCCGTCTGCCCAC
CAGAACGCGTCAGGCCTGCCCACAAACAAATCCAGCAGCAATTAACCCCCCACCCAGCAT
ACCTGCCTGTTCCCACGGCTCACCCTTTTTCAACCTTCAATATCAAAGGGACCACCCATT
TAACGGCTATGGAAAAAGGGGCCACAAAGGATGAAATGGCCAAGATGGAGGAAATGGCCA
AGAATACAAACAGTGAAGCTAGTGGTTTTTACCTAGCTTCGCCTACCTTGCCTTGCACTG
TGTGGTCCAACTGGTCTAGTCCTCTCGCGCTAGTCCTCTCTCGCCCTAGTCCAACCAGCC
CTCTTTCCTGGACTA
■■Homology search results ■■ -
sp_hit_id A6VDX9
Definition sp|A6VDX9|GSH1_PSEA7 Glutamate--cysteine ligase OS=Pseudomonas aeruginosa (strain PA7)
Align length 77
Score (bit) 37.4
E-value 0.038
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917000|Adiantum capillus-veneris mRNA, clone:
YMU001_000094_E08.
         (495 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A6VDX9|GSH1_PSEA7 Glutamate--cysteine ligase OS=Pseudomonas a...    37   0.038
sp|Q9HTY6|GSH1_PSEAE Glutamate--cysteine ligase OS=Pseudomonas a...    37   0.049
sp|Q02EG1|GSH1_PSEAB Glutamate--cysteine ligase OS=Pseudomonas a...    37   0.049
sp|A4VG81|GSH1_PSEU5 Glutamate--cysteine ligase OS=Pseudomonas s...    33   0.71 
sp|Q8BZW2|ANR56_MOUSE Ankyrin repeat domain-containing protein 5...    27   1.6  
sp|Q8NZX0|GLPO_STRP8 Alpha-glycerophosphate oxidase OS=Streptoco...    30   4.6  
sp|O74535|CPSFX_SCHPO Cleavage and polyadenylation factor comple...    26   5.7  
sp|Q82AY2|Y5923_STRAW Uncharacterized lipoprotein SAV_5923 OS=St...    30   6.0  
sp|P07228|ITB1_CHICK Integrin beta-1 OS=Gallus gallus GN=ITGB1 P...    30   6.0  
sp|Q8N4B1|F109A_HUMAN Protein FAM109A OS=Homo sapiens GN=FAM109A...    30   6.1  
sp|Q8IXT2|DMRTD_HUMAN Doublesex- and mab-3-related transcription...    30   7.9  
sp|Q811Q9|PCY1B_MOUSE Choline-phosphate cytidylyltransferase B O...    30   8.0  

>sp|A6VDX9|GSH1_PSEA7 Glutamate--cysteine ligase OS=Pseudomonas
           aeruginosa (strain PA7) GN=gshA PE=3 SV=1
          Length = 527

 Score = 37.4 bits (85), Expect = 0.038
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
 Frame = +3

Query: 222 LTPHPAYLPVPTAHP-FSTFNIKGTTHLTAMEKGATKDEMAKMEEMAKNTNSEASGFYLA 398
           LTPHP  L     HP  +T   +         +    D +  +E + +  +S+  G YL 
Sbjct: 43  LTPHPRALGSTLTHPQITTDYSEALLEFITPTETDVADTLGDLERIHRFASSQLDGEYLW 102

Query: 399 SPTLPCTVWSNWSSPLA 449
           SP++PC +    S P+A
Sbjct: 103 SPSMPCELPDEESIPIA 119


>sp|Q9HTY6|GSH1_PSEAE Glutamate--cysteine ligase OS=Pseudomonas
           aeruginosa GN=gshA PE=3 SV=1
          Length = 527

 Score = 37.0 bits (84), Expect = 0.049
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
 Frame = +3

Query: 222 LTPHPAYLPVPTAHP-FSTFNIKGTTHLTAMEKGATKDEMAKMEEMAKNTNSEASGFYLA 398
           LTPHP  L     HP  +T   +         +    D +  +E + +  +S+  G YL 
Sbjct: 43  LTPHPRALGSTLTHPQITTDYSEALLEFITPTETDVADTLGDLERIHRFASSKLDGEYLW 102

Query: 399 SPTLPCTVWSNWSSPLA 449
           SP++PC +    S P+A
Sbjct: 103 SPSMPCELPDEESIPIA 119


>sp|Q02EG1|GSH1_PSEAB Glutamate--cysteine ligase OS=Pseudomonas
           aeruginosa (strain UCBPP-PA14) GN=gshA PE=3 SV=1
          Length = 527

 Score = 37.0 bits (84), Expect = 0.049
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
 Frame = +3

Query: 222 LTPHPAYLPVPTAHP-FSTFNIKGTTHLTAMEKGATKDEMAKMEEMAKNTNSEASGFYLA 398
           LTPHP  L     HP  +T   +         +    D +  +E + +  +S+  G YL 
Sbjct: 43  LTPHPRALGSTLTHPQITTDYSEALLEFITPTETDVADTLGDLERIHRFASSKLDGEYLW 102

Query: 399 SPTLPCTVWSNWSSPLA 449
           SP++PC +    S P+A
Sbjct: 103 SPSMPCELPDEESIPIA 119


>sp|A4VG81|GSH1_PSEU5 Glutamate--cysteine ligase OS=Pseudomonas
           stutzeri (strain A1501) GN=gshA PE=3 SV=1
          Length = 525

 Score = 33.1 bits (74), Expect = 0.71
 Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
 Frame = +3

Query: 222 LTPHPAYLPVPTAHPFSTFNIKGTT--HLTAMEKGATKDEMAKMEEMAKNTNSEASGFYL 395
           +TPHP  L     HP  T +        +T  ++   ++ +A++E + + T ++    YL
Sbjct: 43  MTPHPIALGSALTHPQITTDYSEALLEFITGTDQDP-RNTLAELEAIHRFTYAKLGDEYL 101

Query: 396 ASPTLPCTVWSNWSSPLA 449
            SP++PC + S    P+A
Sbjct: 102 WSPSMPCPLPSEADIPIA 119


>sp|Q8BZW2|ANR56_MOUSE Ankyrin repeat domain-containing protein 56
           OS=Mus musculus GN=Ankrd56 PE=2 SV=1
          Length = 760

 Score = 27.3 bits (59), Expect(2) = 1.6
 Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 6/50 (12%)
 Frame = -2

Query: 140 GMRAGRPKNESLKNDA------RKYLGARDRLRAGSWARAGSATGHGEGA 9
           G   G+P  E L + A       +   ARD L A  W R G A  H  G+
Sbjct: 172 GQSTGQPLPEDLGDPAVACEKPERAAPARDDLGAPGWLREGEAAEHAPGS 221



 Score = 23.5 bits (49), Expect(2) = 1.6
 Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
 Frame = -3

Query: 259 AVGTGRYAGWGVN--CCWICLWAGLTRSGGQ 173
           A   GR A  G    CCW C   G  +S GQ
Sbjct: 147 AQARGRCAAVGTRGRCCWECQQNGWGQSTGQ 177


>sp|Q8NZX0|GLPO_STRP8 Alpha-glycerophosphate oxidase
           OS=Streptococcus pyogenes serotype M18 GN=glpO PE=3 SV=1
          Length = 612

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 17/83 (20%)
 Frame = +3

Query: 198 AHKQIQQQLTPH-----PAYLPV--PTAHPFSTFNIK----------GTTHLTAMEKGAT 326
           + + + QQ+ PH     P  LPV       FS F +K          G +++ A  K  T
Sbjct: 85  SERAVVQQIAPHIPKPDPMLLPVYDEPGSTFSMFRLKVAMDLYDLLAGVSNMPAANKVLT 144

Query: 327 KDEMAKMEEMAKNTNSEASGFYL 395
           K+E+ K E   K       G YL
Sbjct: 145 KEEVLKREPDLKQEGLLGGGVYL 167


>sp|O74535|CPSFX_SCHPO Cleavage and polyadenylation factor complex
           subunit C74.02c OS=Schizosaccharomyces pombe
           GN=SPCC74.02c PE=1 SV=1
          Length = 710

 Score = 25.8 bits (55), Expect(2) = 5.7
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 145 APAGQVLLPSAHQNASGLPTNKSSSN 222
           APAG  + PSA    S   T KSS++
Sbjct: 358 APAGPAMAPSASNKPSASSTTKSSNS 383



 Score = 23.1 bits (48), Expect(2) = 5.7
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = +3

Query: 324 TKDEMAKMEEMAKNTNSEASGFY--LASPTLPCTVWSNWSSPLALVLSRPSPTSPLS 488
           TK   +K ++  K T+   + F+  LAS T P +  S+  +P  L   + +P++PLS
Sbjct: 378 TKSSNSKSKK--KVTSISGTSFFKNLASSTKPTSASSSTKAP--LTKQQTNPSTPLS 430


>sp|Q82AY2|Y5923_STRAW Uncharacterized lipoprotein SAV_5923
           OS=Streptomyces avermitilis GN=SAV_5923 PE=4 SV=2
          Length = 332

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 22/54 (40%), Positives = 28/54 (51%)
 Frame = -2

Query: 179 WADGRRT*PAGAVGMRAGRPKNESLKNDARKYLGARDRLRAGSWARAGSATGHG 18
           +ADGR T      G+RAGR KN S    AR+Y+   + L +G  A  G  T  G
Sbjct: 208 FADGRFT-----SGLRAGRKKNASKPGLARQYMD--EPLNSGDHAPLGLRTTDG 254


>sp|P07228|ITB1_CHICK Integrin beta-1 OS=Gallus gallus GN=ITGB1 PE=1
           SV=1
          Length = 803

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 229 GVNCCWICLWAGLTRSGGQTGEELDRQGQWECAQAGP 119
           G+ CC I  W+G  + GG    + + +   EC QAGP
Sbjct: 13  GILCCLI--WSGSAQQGGSDCIKANAKSCGECIQAGP 47


>sp|Q8N4B1|F109A_HUMAN Protein FAM109A OS=Homo sapiens GN=FAM109A
           PE=2 SV=1
          Length = 249

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +1

Query: 118 LGLPARIPTAPAGQVLLPSAHQNASGLPTNKSSSN*PPTQHTC-LFPRLTLFQPSISKGP 294
           L LP  +P+A A    LPSA      LP  +  S  PP ++ C ++     F+P     P
Sbjct: 146 LPLPPSLPSALAPVPSLPSAPAPVPALPLPRRPSALPPKENGCAVWSTEATFRPGPEPPP 205

Query: 295 P 297
           P
Sbjct: 206 P 206
tr_hit_id B7V3V0
Definition tr|B7V3V0|B7V3V0_PSEAE Glutamate--cysteine ligase OS=Pseudomonas aeruginosa LESB58
Align length 77
Score (bit) 38.5
E-value 0.17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917000|Adiantum capillus-veneris mRNA, clone:
YMU001_000094_E08.
         (495 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B7V3V0|B7V3V0_PSEAE Glutamate--cysteine ligase OS=Pseudomonas...    39   0.17 
tr|B6LJ86|B6LJ86_BRAFL Putative uncharacterized protein OS=Branc...    37   0.39 
tr|A3LIS4|A3LIS4_PSEAE Glutamate--cysteine ligase OS=Pseudomonas...    37   0.51 
tr|A3L261|A3L261_PSEAE Glutamate--cysteine ligase OS=Pseudomonas...    37   0.51 
tr|B2WQ23|B2WQ23_PYRTR Peroxisome assembly protein 12 OS=Pyrenop...    37   0.68 
tr|Q4IVL1|Q4IVL1_AZOVI Glutamate--cysteine ligase OS=Azotobacter...    35   1.9  
tr|B6LQA7|B6LQA7_BRAFL Putative uncharacterized protein OS=Branc...    34   3.3  
tr|A8PY07|A8PY07_MALGO Putative uncharacterized protein OS=Malas...    34   3.3  
tr|A9W1W1|A9W1W1_METEP Putative uncharacterized protein OS=Methy...    33   5.6  
tr|A3PNU9|A3PNU9_RHOS1 Putative uncharacterized protein OS=Rhodo...    33   7.3  
tr|Q3R7F1|Q3R7F1_XYLFA Cellulase OS=Xylella fastidiosa Ann-1 GN=...    33   7.3  
tr|Q4CNG6|Q4CNG6_TRYCR Putative uncharacterized protein OS=Trypa...    33   7.3  
tr|A2QBU0|A2QBU0_ASPNC Contig An02c0010, complete genome OS=Aspe...    33   7.3  
tr|Q1QDR9|Q1QDR9_PSYCK Lipoprotein signal peptidase OS=Psychroba...    33   9.5  
tr|A9BVP2|A9BVP2_DELAS Glutamate--cysteine ligase OS=Delftia aci...    33   9.5  

>tr|B7V3V0|B7V3V0_PSEAE Glutamate--cysteine ligase OS=Pseudomonas
           aeruginosa LESB58 GN=gshA PE=4 SV=1
          Length = 527

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
 Frame = +3

Query: 222 LTPHPAYLPVPTAHP-FSTFNIKGTTHLTAMEKGATKDEMAKMEEMAKNTNSEASGFYLA 398
           LTPHP  L     HP  +T   +         +    D +A +E + +  +S+  G YL 
Sbjct: 43  LTPHPRALGSTLTHPQITTDYSEALLEFITPTETDVADTLADLERIHRFASSKLDGEYLW 102

Query: 399 SPTLPCTVWSNWSSPLA 449
           SP++PC +    S P+A
Sbjct: 103 SPSMPCELPDEESIPIA 119


>tr|B6LJ86|B6LJ86_BRAFL Putative uncharacterized protein
            OS=Branchiostoma floridae GN=BRAFLDRAFT_71268 PE=4 SV=1
          Length = 1833

 Score = 37.4 bits (85), Expect = 0.39
 Identities = 25/84 (29%), Positives = 38/84 (45%)
 Frame = +3

Query: 228  PHPAYLPVPTAHPFSTFNIKGTTHLTAMEKGATKDEMAKMEEMAKNTNSEASGFYLASPT 407
            P P + P PT HPF T  + GT+ L   +  +    M +    ++ T S      L S +
Sbjct: 1683 PQPTFDPQPTFHPFGT--VAGTSAL--WDTPSFSSAMGEQPPWSRETGSPQRPSPLLSTS 1738

Query: 408  LPCTVWSNWSSPLALVLSRPSPTS 479
             P ++W   +S    + S PS TS
Sbjct: 1739 APTSMWDIPASSAEALWSMPSTTS 1762


>tr|A3LIS4|A3LIS4_PSEAE Glutamate--cysteine ligase OS=Pseudomonas
           aeruginosa 2192 GN=PA2G_04744 PE=3 SV=1
          Length = 527

 Score = 37.0 bits (84), Expect = 0.51
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
 Frame = +3

Query: 222 LTPHPAYLPVPTAHP-FSTFNIKGTTHLTAMEKGATKDEMAKMEEMAKNTNSEASGFYLA 398
           LTPHP  L     HP  +T   +         +    D +  +E + +  +S+  G YL 
Sbjct: 43  LTPHPRALGSTLTHPQITTDYSEALLEFITPTETDVADTLGDLERIHRFASSKLDGEYLW 102

Query: 399 SPTLPCTVWSNWSSPLA 449
           SP++PC +    S P+A
Sbjct: 103 SPSMPCELPDEESIPIA 119


>tr|A3L261|A3L261_PSEAE Glutamate--cysteine ligase OS=Pseudomonas
           aeruginosa C3719 GN=PACG_04216 PE=3 SV=1
          Length = 527

 Score = 37.0 bits (84), Expect = 0.51
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
 Frame = +3

Query: 222 LTPHPAYLPVPTAHP-FSTFNIKGTTHLTAMEKGATKDEMAKMEEMAKNTNSEASGFYLA 398
           LTPHP  L     HP  +T   +         +    D +  +E + +  +S+  G YL 
Sbjct: 43  LTPHPRALGSTLTHPQITTDYSEALLEFITPTETDVADTLGDLERIHRFASSKLDGEYLW 102

Query: 399 SPTLPCTVWSNWSSPLA 449
           SP++PC +    S P+A
Sbjct: 103 SPSMPCELPDEESIPIA 119


>tr|B2WQ23|B2WQ23_PYRTR Peroxisome assembly protein 12
           OS=Pyrenophora tritici-repentis (strain Pt-1C-BFP)
           GN=PTRG_12091 PE=4 SV=1
          Length = 465

 Score = 36.6 bits (83), Expect = 0.68
 Identities = 26/64 (40%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
 Frame = +1

Query: 127 PARIPTAP--AGQVLLPSAHQNASGLPT----NKSSSN*PPTQHTCLFPRLTLFQPSISK 288
           P  +P+ P  A Q+    AH +  G PT    NKS S  PP     L P LT+ QPS S 
Sbjct: 310 PPILPSLPPSAKQLAAKQAHASEKGRPTSSSSNKSQSANPPISSKTLLPILTVTQPSSST 369

Query: 289 GPPI 300
             PI
Sbjct: 370 LCPI 373


>tr|Q4IVL1|Q4IVL1_AZOVI Glutamate--cysteine ligase OS=Azotobacter
           vinelandii DJ GN=AvinDRAFT_2183 PE=3 SV=1
          Length = 530

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
 Frame = +3

Query: 225 TPHPAYLPVPTAHPFSTFNIKGTTHLTAMEKGATKDE------MAKMEEMAKNTNSEASG 386
           TPHPA L     HP+ T     T +  A+ +  T  E      +A +E + +   ++  G
Sbjct: 44  TPHPAALGSALTHPYIT-----TDYSEALLEFITPAETDSAATLAALERVHRFACAKLDG 98

Query: 387 FYLASPTLPCTVWSNWSSPLA 449
            YL SP++PC + +    P+A
Sbjct: 99  EYLWSPSMPCPLPAEEDIPIA 119


>tr|B6LQA7|B6LQA7_BRAFL Putative uncharacterized protein
            OS=Branchiostoma floridae GN=BRAFLDRAFT_73285 PE=4 SV=1
          Length = 1812

 Score = 34.3 bits (77), Expect = 3.3
 Identities = 24/84 (28%), Positives = 37/84 (44%)
 Frame = +3

Query: 228  PHPAYLPVPTAHPFSTFNIKGTTHLTAMEKGATKDEMAKMEEMAKNTNSEASGFYLASPT 407
            P P + P  T HPF T  + GT+ L   +  +    M +    ++ T S      L S +
Sbjct: 1662 PQPTFDPQATFHPFGT--VAGTSAL--WDTPSFSSAMGEQPPWSRETGSPQRPSPLLSTS 1717

Query: 408  LPCTVWSNWSSPLALVLSRPSPTS 479
             P ++W   +S    + S PS TS
Sbjct: 1718 APTSMWDIPASSAEALWSMPSTTS 1741


>tr|A8PY07|A8PY07_MALGO Putative uncharacterized protein OS=Malassezia
            globosa (strain ATCC 96807 / CBS 7966) GN=MGL_1566 PE=4
            SV=1
          Length = 1128

 Score = 34.3 bits (77), Expect = 3.3
 Identities = 19/49 (38%), Positives = 27/49 (55%)
 Frame = +3

Query: 198  AHKQIQQQLTPHPAYLPVPTAHPFSTFNIKGTTHLTAMEKGATKDEMAK 344
            A +Q QQQ  PHP   P PTAHP  ++       + A  +GAT+ + A+
Sbjct: 1006 AQQQAQQQAHPHPQQTP-PTAHPHPSYQ----PQVLAQRQGATQQQGAQ 1049


>tr|A9W1W1|A9W1W1_METEP Putative uncharacterized protein
           OS=Methylobacterium extorquens (strain PA1) GN=Mext_1165
           PE=4 SV=1
          Length = 391

 Score = 33.5 bits (75), Expect = 5.6
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = -2

Query: 179 WADGRRT*PAGAVGMRAGRPKNESLKNDARKYLGARDRLRAGSWARAGSATGHGEG 12
           WA         A+GMR G+P + ++   AR +L A    RAG +       GH  G
Sbjct: 196 WASTEHNLDIVALGMRLGKPDDRAMAASARTFLDAAFDERAGCFRMGTDTEGHMRG 251


>tr|A3PNU9|A3PNU9_RHOS1 Putative uncharacterized protein
           OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH
           2.4.9) GN=Rsph17029_2913 PE=4 SV=1
          Length = 154

 Score = 33.1 bits (74), Expect = 7.3
 Identities = 23/57 (40%), Positives = 27/57 (47%)
 Frame = -2

Query: 179 WADGRRT*PAGAVGMRAGRPKNESLKNDARKYLGARDRLRAGSWARAGSATGHGEGA 9
           WADGR     G+    AG P N+   + A    GARD +     AR G A G G GA
Sbjct: 58  WADGRGAGEGGSASPAAGSP-NDGTAHTADH--GARDGVVRDHLARDGPAEGAGRGA 111