| Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BP917003|Adiantum capillus-veneris mRNA, clone:
YMU001_000094_F02.
(310 letters)
Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|A5N867|SYE_CLOK5 Glutamyl-tRNA synthetase OS=Clostridium kluy... 34 0.26
sp|P47428|TRUA_MYCGE tRNA pseudouridine synthase A OS=Mycoplasma... 31 1.7
sp|Q8C267|SETB2_MOUSE Histone-lysine N-methyltransferase SETDB2 ... 28 2.1
sp|Q0ABI1|RPOC_ALHEH DNA-directed RNA polymerase subunit beta' O... 31 2.2
sp|Q12163|NBP2_YEAST NAP1-binding protein 2 OS=Saccharomyces cer... 30 2.9
sp|Q256C5|ENGA_CHLFF GTP-binding protein engA OS=Chlamydophila f... 30 3.7
sp|P38898|YH17_YEAST Putative uncharacterized protein YHR217C OS... 30 4.9
sp|A5GVF1|RPOC1_SYNR3 DNA-directed RNA polymerase subunit gamma ... 30 4.9
sp|Q21M92|RPOC_SACD2 DNA-directed RNA polymerase subunit beta' O... 29 6.4
sp|A6W398|RPOC_MARMS DNA-directed RNA polymerase subunit beta' O... 29 6.4
sp|P17442|PHO81_YEAST Phosphate system positive regulatory prote... 29 6.4
sp|Q54QR1|LIMA_DICDI LIM domain-containing protein A OS=Dictyost... 29 6.4
sp|Q8K1L0|CREB5_MOUSE cAMP-responsive element-binding protein 5 ... 29 6.4
sp|Q02930|CREB5_HUMAN cAMP-responsive element-binding protein 5 ... 29 6.4
sp|Q5W1J6|FOXM1_XENLA Forkhead box protein M1 OS=Xenopus laevis ... 29 6.4
sp|P19194|VP3_BPCHP Protein VP3 OS=Chlamydia phage 1 PE=1 SV=1 29 8.3
sp|P79457|UTY_MOUSE Histone demethylase UTY OS=Mus musculus GN=U... 29 8.3
>sp|A5N867|SYE_CLOK5 Glutamyl-tRNA synthetase OS=Clostridium
kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680)
GN=gltX PE=3 SV=1
Length = 487
Score = 33.9 bits (76), Expect = 0.26
Identities = 22/63 (34%), Positives = 31/63 (49%)
Frame = -1
Query: 256 CTKFSVEKLSKNLLQNERYVDEDDNPEWGFLDAVADIDNDIHVCVDEGMMHLDSGMRTKA 77
C K S E++++ L N YV +NPE GF +I DI V E LD + K+
Sbjct: 134 CLKLSKEEINEKLASNIPYVIRQNNPESGFTTFHDEIYGDISVDNSE----LDDMILIKS 189
Query: 76 DSF 68
D +
Sbjct: 190 DGY 192
>sp|P47428|TRUA_MYCGE tRNA pseudouridine synthase A OS=Mycoplasma
genitalium GN=truA PE=3 SV=1
Length = 244
Score = 31.2 bits (69), Expect = 1.7
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 3/97 (3%)
Frame = +2
Query: 8 NLLLYIIRQSLLINKISRTCKTVSLSAHSRIQMHHTFIDTNMYVVIDVCYSIQKTPFRIV 187
NLL+ I Q + + I +T V+ S H+R Q + T +Y + C ++ F V
Sbjct: 73 NLLIRKINQLIKPHCIVKTLVLVNDSFHARFQ-----VKTKVYEYLINCGNLNPLQFNYV 127
Query: 188 ILINIPLILQQV---FR*FLDRKLCTTFNFTTHSESI 289
+N L L+++ FL +K +F+ + H++SI
Sbjct: 128 WQLNQQLDLEKLKADATLFLGKKNFLSFSSSIHTDSI 164
>sp|Q8C267|SETB2_MOUSE Histone-lysine N-methyltransferase SETDB2
OS=Mus musculus GN=Setdb2 PE=2 SV=2
Length = 713
Score = 28.5 bits (62), Expect(2) = 2.1
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 12/44 (27%)
Frame = +1
Query: 124 HKHVCRYRCLLQHP-----ENPIQ---DCH---PHQHT-SHSAA 219
H+H+C CL++ P ENP+Q CH H T SHS+A
Sbjct: 147 HRHICSRTCLMETPLSLKGENPLQLPIRCHFQRRHAKTNSHSSA 190
Score = 21.9 bits (45), Expect(2) = 2.1
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = +3
Query: 222 FLDNFSTENFVQHSISQPTVRAFPSD-DIS 308
F DNFS +VQ + + P SD DIS
Sbjct: 222 FTDNFSFNTYVQLTRNHPKQNEVVSDVDIS 251
>sp|Q0ABI1|RPOC_ALHEH DNA-directed RNA polymerase subunit beta'
OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=rpoC
PE=3 SV=1
Length = 1426
Score = 30.8 bits (68), Expect = 2.2
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = -1
Query: 310 EDISSEGNALTVGCEIECCTKFS-VEKLSKNLLQNERYVDEDDNPEWGFLDAVADIDNDI 134
+ + G A T+ EIE S +++LSK L E +++ + PEW +D + + D+
Sbjct: 191 KSLDMTGEARTLREEIEGTNSESKIKRLSKRLKLIEAFLESGNKPEWMIMDVLPVLPPDL 250
Query: 133 HVCVDEGMMHLDSGMRTKAD 74
V LD G +D
Sbjct: 251 RPLVP-----LDGGRFATSD 265
>sp|Q12163|NBP2_YEAST NAP1-binding protein 2 OS=Saccharomyces
cerevisiae GN=NBP2 PE=1 SV=1
Length = 236
Score = 30.4 bits (67), Expect = 2.9
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -1
Query: 226 KNLLQNERYVDEDDNPEWGFLDAVADIDNDIHVCVD 119
KN + N + DDN EW +D VA+++ D+ +D
Sbjct: 198 KNNIDNTNEDEYDDNDEWEDIDDVAEVEADMKTKLD 233
>sp|Q256C5|ENGA_CHLFF GTP-binding protein engA OS=Chlamydophila
felis (strain Fe/C-56) GN=engA PE=3 SV=1
Length = 475
Score = 30.0 bits (66), Expect = 3.7
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Frame = +2
Query: 53 ISRTCKT--VSLSAHSRIQMHHTFIDTNMYVVIDVCYSIQKT--PFRIVILINIPLILQQ 220
+SR T V+ + S +Q HH + + + Y+I KT PF+ ++ IN +L +
Sbjct: 385 VSRKVPTPVVNKTLASALQKHHPQVINGRR--LRIYYAIHKTATPFQFLLFINAKSLLTK 442
Query: 221 VFR*FLDRKLCTTFN 265
+ +L L T+FN
Sbjct: 443 HYECYLKNTLKTSFN 457
>sp|P38898|YH17_YEAST Putative uncharacterized protein YHR217C
OS=Saccharomyces cerevisiae GN=YHR217C PE=5 SV=1
Length = 153
Score = 29.6 bits (65), Expect = 4.9
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = +1
Query: 118 HRHKHVCRYRCLLQHPENPIQDCHPHQHTSH 210
H H H + HP P HPH HT H
Sbjct: 23 HPHPHPHPHTPTHTHPHTPTPTPHPHPHTPH 53
>sp|A5GVF1|RPOC1_SYNR3 DNA-directed RNA polymerase subunit gamma
OS=Synechococcus sp. (strain RCC307) GN=rpoC1 PE=3 SV=1
Length = 634
Score = 29.6 bits (65), Expect = 4.9
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = -1
Query: 235 KLSKNLLQNERYVDEDDNPEWGFLDAVADIDNDIHVCVDEGMMHLDSGMRTKAD 74
KL K L + ++ D PEW LDA+ I D+ M+ LD G +D
Sbjct: 227 KLIKRLRVIDNFIATDARPEWMVLDAIPVIPPDL-----RPMVQLDGGRFATSD 275
>sp|Q21M92|RPOC_SACD2 DNA-directed RNA polymerase subunit beta'
OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 /
DSM 17024) GN=rpoC PE=3 SV=1
Length = 1410
Score = 29.3 bits (64), Expect = 6.4
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = -1
Query: 241 VEKLSKNLLQNERYVDEDDNPEWGFLDAVADIDNDIHVCVDEGMMHLDSGMRTKAD 74
++KLSK L E ++ + PEW L+A+ + D+ V LD G +D
Sbjct: 214 IKKLSKRLKLLEAFIQSGNKPEWMVLEALPVLPPDLRPLVP-----LDGGRFATSD 264
>sp|A6W398|RPOC_MARMS DNA-directed RNA polymerase subunit beta'
OS=Marinomonas sp. (strain MWYL1) GN=rpoC PE=3 SV=1
Length = 1400
Score = 29.3 bits (64), Expect = 6.4
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -1
Query: 241 VEKLSKNLLQNERYVDEDDNPEWGFLDAVADIDNDIHVCV 122
++KLSK L E + +NPEW LD + + D+ V
Sbjct: 214 IKKLSKRLKLVEAFYHSGNNPEWMVLDVLPVLPPDLRPLV 253
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| Report |
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