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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917004
Clone id YMU001_000094_F04
Library
Length 508
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000094_F04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AGTCTGTGGTTACGCCAACTTGATGACAAGCCTGCTCCAAAAGAACATTTGCTGTTCCTA
TAGCAGTATCCGCTTTCAGGCCAACAACAATTTGAAGAGGTTTGTCAGAGGCTGCAGTCA
TCATAAAAGAATCAGTTTCTTGCCGCAAAACATCTTTGGAGTTTGCAGTAGAGGACGGGG
CAAGCGCACCCATTGCAGAAGGGGTGAGAGGAGCGGGAGGCCAGTGTTGGAAGATGTCCG
AGCAATCATCCAATGGGTATTGCAGCCAAGTAACAAGCTCATCATCAGTGAAAGGACTCT
GATGACAGCTCTTTGCATTAACGATGCTATCGTTTTTACTGCTAAGGAAAGCAAGATTAT
CTAGCCTATCAAGAGGCTGATTTTGAATTGTCTCATGGTCTTCTTCTTCATCTTGCTTAT
CAGAAAATCTGTGCCCACCTGCCTGCTCAGACATATCTCCGAACTAGCCCTTCTTTCTCT
TGAATTTCTGCAGAGGGTCGTAATGGGT
■■Homology search results ■■ -
sp_hit_id Q8GZM7
Definition sp|Q8GZM7|PIF1_ARATH Transcription factor PIF1 OS=Arabidopsis thaliana
Align length 59
Score (bit) 32.3
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917004|Adiantum capillus-veneris mRNA, clone:
YMU001_000094_F04.
         (508 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8GZM7|PIF1_ARATH Transcription factor PIF1 OS=Arabidopsis th...    32   1.3  
sp|Q9WV48|SHAN1_RAT SH3 and multiple ankyrin repeat domains prot...    32   1.7  
sp|Q92J87|RL7_RICCN 50S ribosomal protein L7/L12 OS=Rickettsia c...    31   2.9  
sp|Q5RDC8|K0528_PONAB Uncharacterized protein KIAA0528 homolog O...    31   2.9  
sp|Q12226|AYT1_YEAST Trichothecene 3-O-acetyltransferase OS=Sacc...    31   3.9  
sp|Q9Y566|SHAN1_HUMAN SH3 and multiple ankyrin repeat domains pr...    30   5.0  
sp|Q47LI4|RL7_THEFY 50S ribosomal protein L7/L12 OS=Thermobifida...    30   5.0  
sp|Q84LH8|PIF5_ARATH Transcription factor PIF5 OS=Arabidopsis th...    30   5.0  
sp|O14772|FPGT_HUMAN Fucose-1-phosphate guanylyltransferase OS=H...    30   5.0  
sp|Q28C44|C19L2_XENTR CWF19-like protein 2 OS=Xenopus tropicalis...    30   5.0  
sp|A1KQY9|K118A_POLSE Keratin, type I cytoskeletal 18-A OS=Polyp...    30   6.5  
sp|A1YPR0|ZBT7C_HUMAN Zinc finger and BTB domain-containing prot...    30   6.6  
sp|Q9FY06|PPF1_PEA Inner membrane protein PPF-1, chloroplastic O...    30   8.6  
sp|O95427|PIGN_HUMAN GPI ethanolamine phosphate transferase 1 OS...    30   8.6  

>sp|Q8GZM7|PIF1_ARATH Transcription factor PIF1 OS=Arabidopsis
           thaliana GN=PIF1 PE=1 SV=1
          Length = 478

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
 Frame = -1

Query: 286 DDELVTWLQYPLDD---CSD-IFQHWPPAPLTPSAMGALAPSSTANSKDVLRQETDSFM 122
           +DE+ +WL YPL D   CSD +F   P A  T +     A     +S +  R    +FM
Sbjct: 88  EDEMTSWLHYPLRDDDFCSDLLFSAAPTATATATVSQVTAARPPVSSTNESRPPVRNFM 146


>sp|Q9WV48|SHAN1_RAT SH3 and multiple ankyrin repeat domains protein 1
            OS=Rattus norvegicus GN=Shank1 PE=1 SV=1
          Length = 2167

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 23/73 (31%), Positives = 32/73 (43%)
 Frame = -1

Query: 310  SCHQSPFTDDELVTWLQYPLDDCSDIFQHWPPAPLTPSAMGALAPSSTANSKDVLRQETD 131
            S  +   ++D   + L  P    S IFQ+WP  PL P   G+   SSTA +         
Sbjct: 1924 SLQRQRLSEDSQTSLLSKP---SSSIFQNWPKPPLPPLPTGSGVSSSTAAAPGATSPSAS 1980

Query: 130  SFMMTAASDKPLQ 92
            S    +AS + LQ
Sbjct: 1981 S---ASASTRHLQ 1990


>sp|Q92J87|RL7_RICCN 50S ribosomal protein L7/L12 OS=Rickettsia
           conorii GN=rplL PE=3 SV=2
          Length = 125

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
 Frame = -1

Query: 214 APLTPSAMGALAPSSTANSKDVLRQETDSFMMTAASDKPLQIVVGLKADTAIG--TANVL 41
           AP+  +A+GA AP++ A    V  +     ++TAA DK ++++  +K  T +G   A  L
Sbjct: 36  APVAVAAVGAAAPAAEA----VAEKTEFEVVLTAAGDKKVEVIKVVKDITGLGLIEAKKL 91

Query: 40  LEQA 29
           +++A
Sbjct: 92  VDEA 95


>sp|Q5RDC8|K0528_PONAB Uncharacterized protein KIAA0528 homolog
            OS=Pongo abelii PE=2 SV=1
          Length = 1000

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 22/90 (24%), Positives = 37/90 (41%)
 Frame = -1

Query: 313  KSCHQSPFTDDELVTWLQYPLDDCSDIFQHWPPAPLTPSAMGALAPSSTANSKDVLRQET 134
            KS  ++   ++EL   LQ+PL+ CSD F   P  P     +   +P    N ++      
Sbjct: 811  KSLQRASTDNEEL---LQFPLELCSDSFPSHPFPPAKAVTVERASPVGDGNFRNRSAPPC 867

Query: 133  DSFMMTAASDKPLQIVVGLKADTAIGTANV 44
             +  +      PL  + G K    +G  N+
Sbjct: 868  ANSTVGVVKMTPLSFIPGAKITKYLGIINM 897


>sp|Q12226|AYT1_YEAST Trichothecene 3-O-acetyltransferase
           OS=Saccharomyces cerevisiae GN=AYT1 PE=1 SV=1
          Length = 474

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 13/22 (59%), Positives = 18/22 (81%), Gaps = 2/22 (9%)
 Frame = -1

Query: 331 DSIVNA--KSCHQSPFTDDELV 272
           +SI+N   KSCHQ PF+D+EL+
Sbjct: 182 ESIINLLNKSCHQKPFSDEELL 203


>sp|Q9Y566|SHAN1_HUMAN SH3 and multiple ankyrin repeat domains protein
            1 OS=Homo sapiens GN=SHANK1 PE=1 SV=1
          Length = 2161

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 12/76 (15%)
 Frame = -1

Query: 310  SCHQSPFTDDELVTWLQYPLDDCSDIFQHWPPAPLTP------------SAMGALAPSST 167
            S  +   +DD   + L  P+   S +FQ+WP  PL P            +A GA +PS++
Sbjct: 1918 SLQRQRLSDDSQSSLLSKPV---SSLFQNWPKPPLPPLPTGTGVSPTAAAAPGATSPSAS 1974

Query: 166  ANSKDVLRQETDSFMM 119
            ++S      +   F M
Sbjct: 1975 SSSTSTRHLQGVEFEM 1990


>sp|Q47LI4|RL7_THEFY 50S ribosomal protein L7/L12 OS=Thermobifida
           fusca (strain YX) GN=rplL PE=3 SV=1
          Length = 130

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 22/90 (24%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
 Frame = -1

Query: 316 AKSCHQSPFTDDELVTWLQYPLDDCSDIFQH-WPPAPLTPSAMGALAPSSTANSKDVLRQ 140
           AK  H+   +  E +T L+  L +   +F+  +      P+A+ A AP+     +  + +
Sbjct: 2   AKLSHEELLSAFEEMTLLE--LSEFVKLFEEKFDVTAAAPAAVVAAAPAGGGGGEAAVEE 59

Query: 139 ETDSF--MMTAASDKPLQIVVGLKADTAIG 56
           E D F  ++ +A DK +Q++  ++  T +G
Sbjct: 60  EKDEFDVILESAGDKKIQVIKEVRGLTNLG 89


>sp|Q84LH8|PIF5_ARATH Transcription factor PIF5 OS=Arabidopsis
           thaliana GN=PIF5 PE=1 SV=1
          Length = 444

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 21/78 (26%), Positives = 33/78 (42%)
 Frame = -1

Query: 460 GDMSEQAGGHRFSDKQDEEEDHETIQNQPLDRLDNLAFLSSKNDSIVNAKSCHQSPFTDD 281
           G +  Q+   R    Q +    ET++      LDN   +   N + ++          D 
Sbjct: 37  GQVVLQSQARREPSVQVQTHKQETLRKPNNIFLDNQETVQKPNYAALD----------DQ 86

Query: 280 ELVTWLQYPLDDCSDIFQ 227
           E V+W+QYP DD  D F+
Sbjct: 87  ETVSWIQYPPDDVIDPFE 104


>sp|O14772|FPGT_HUMAN Fucose-1-phosphate guanylyltransferase OS=Homo
           sapiens GN=FPGT PE=1 SV=2
          Length = 594

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +2

Query: 35  LQKNICCSYSSIRFQANNNLKRFVRGCSHHKRISFLPQNIFGVC 166
           L+ N C  Y+++ F   +NLK+ V+  S  K + F     FGVC
Sbjct: 458 LKMNRCLKYATMAFGVQDNLKKSVKTLSDIKLLQF-----FGVC 496


>sp|Q28C44|C19L2_XENTR CWF19-like protein 2 OS=Xenopus tropicalis
           GN=cwf19l2 PE=2 SV=1
          Length = 922

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = -1

Query: 319 NAKSCHQSPFTDDELVTWLQYPLDDCSD 236
           ++K C Q P ++++ ++W + P  DCS+
Sbjct: 395 SSKPCFQKPLSNEDEISWKKVPSKDCSE 422
tr_hit_id A9SDX1
Definition tr|A9SDX1|A9SDX1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 47
Score (bit) 38.1
E-value 0.25
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917004|Adiantum capillus-veneris mRNA, clone:
YMU001_000094_F04.
         (508 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SDX1|A9SDX1_PHYPA Predicted protein OS=Physcomitrella paten...    38   0.25 
tr|A9SDJ0|A9SDJ0_PHYPA Predicted protein OS=Physcomitrella paten...    37   0.42 
tr|Q68E78|Q68E78_AERPU DNA topoisomerase OS=Aeromonas punctata G...    36   0.94 
tr|Q209L9|Q209L9_AERHY DNA topoisomerase OS=Aeromonas hydrophila...    36   0.94 
tr|A3LUA0|A3LUA0_PICST Transcriptional accessory protein involve...    36   1.2  
tr|A7PJR3|A7PJR3_VITVI Chromosome chr12 scaffold_18, whole genom...    35   1.6  
tr|A5AGT8|A5AGT8_VITVI Putative uncharacterized protein OS=Vitis...    35   2.1  
tr|Q4WLS1|Q4WLS1_ASPFU Translation initiation factor eif-2b epsi...    35   2.1  
tr|B0Y8T9|B0Y8T9_ASPFC Translation initiation factor eif-2b epsi...    35   2.1  
tr|A5AZT1|A5AZT1_VITVI Putative uncharacterized protein OS=Vitis...    35   2.7  
tr|Q0CV75|Q0CV75_ASPTN Putative uncharacterized protein OS=Asper...    35   2.7  
tr|A8R966|A8R966_9FIRM Putative uncharacterized protein OS=Eubac...    34   3.6  
tr|A1DNX7|A1DNX7_NEOFI Translation initiation factor eif-2b epsi...    34   3.6  
tr|Q22A16|Q22A16_TETTH Putative uncharacterized protein OS=Tetra...    34   4.7  
tr|A9THQ7|A9THQ7_PHYPA Predicted protein OS=Physcomitrella paten...    33   6.1  
tr|A8PPV1|A8PPV1_BRUMA Angiotensin-converting enzyme family prot...    33   6.1  
tr|A8PPU9|A8PPU9_BRUMA Angiotensin-converting enzyme family prot...    33   6.1  
tr|A2RN85|A2RN85_LACLM Putative uncharacterized protein OS=Lacto...    33   7.8  

>tr|A9SDX1|A9SDX1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_164436 PE=4 SV=1
          Length = 801

 Score = 38.1 bits (87), Expect = 0.25
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
 Frame = -1

Query: 334 NDSIVNAKSCHQSPFTDDELVTWLQYPLDD------CSDIFQHWPPA 212
           N++       H      DE+V+WLQYPLDD      CSD F   P A
Sbjct: 190 NETATEPHPPHNIDVDSDEMVSWLQYPLDDTLERNYCSDFFGELPDA 236


>tr|A9SDJ0|A9SDJ0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_164347 PE=4 SV=1
          Length = 1015

 Score = 37.4 bits (85), Expect = 0.42
 Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -1

Query: 334 NDSIVNAKSCHQSPFTDDELVTWLQYPLDD--CSDIF 230
           N S       H     +DE+V+WLQYPLDD  CSD F
Sbjct: 333 NGSNTAPNPVHNIDVDNDEMVSWLQYPLDDPFCSDFF 369


>tr|Q68E78|Q68E78_AERPU DNA topoisomerase OS=Aeromonas punctata
           GN=top PE=3 SV=1
          Length = 658

 Score = 36.2 bits (82), Expect = 0.94
 Identities = 19/56 (33%), Positives = 32/56 (57%)
 Frame = -1

Query: 427 FSDKQDEEEDHETIQNQPLDRLDNLAFLSSKNDSIVNAKSCHQSPFTDDELVTWLQ 260
           FSD  ++E+D +T  N P+  L     LS++N  ++N K+   S FT+  L+  L+
Sbjct: 402 FSDDTEDEDDKDTKANNPIPVLAPGQRLSAENGRVLNKKTRAPSRFTEASLIAELE 457


>tr|Q209L9|Q209L9_AERHY DNA topoisomerase OS=Aeromonas hydrophila
           GN=top PE=3 SV=1
          Length = 658

 Score = 36.2 bits (82), Expect = 0.94
 Identities = 19/56 (33%), Positives = 32/56 (57%)
 Frame = -1

Query: 427 FSDKQDEEEDHETIQNQPLDRLDNLAFLSSKNDSIVNAKSCHQSPFTDDELVTWLQ 260
           FSD  ++E+D +T  N P+  L     LS++N  ++N K+   S FT+  L+  L+
Sbjct: 402 FSDDTEDEDDKDTKANNPIPVLAPGQRLSAENGRVLNKKTRAPSRFTEASLIAELE 457


>tr|A3LUA0|A3LUA0_PICST Transcriptional accessory protein involved
           in TBP (TATA-binding protein) regulation helicase MOT1
           OS=Pichia stipitis GN=MOT1 PE=4 SV=2
          Length = 1901

 Score = 35.8 bits (81), Expect = 1.2
 Identities = 31/120 (25%), Positives = 49/120 (40%), Gaps = 23/120 (19%)
 Frame = -1

Query: 418 KQDEEEDHETI---QNQPLDRLDN--------------------LAFLSSKNDSIVNAKS 308
           KQ+EEEDH  I   Q++ L +LDN                       L++K+D I +  S
Sbjct: 105 KQEEEEDHIKIKLEQDEELQKLDNNLSSLVSFASFDLAEILKSGARLLATKSDEIPDPSS 164

Query: 307 CHQSPFTDDELVTWLQYPLDDCSDIFQHWPPAPLTPSAMGALAPSSTANSKDVLRQETDS 128
           C ++               D+  +I      +P TP A     P+S     ++L++ TDS
Sbjct: 165 CDENSLIGRIKKRKTSIIKDEEEEINSKSSASPPTPFASTPGTPTSAKAELNILKESTDS 224


>tr|A7PJR3|A7PJR3_VITVI Chromosome chr12 scaffold_18, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00018844001
           PE=4 SV=1
          Length = 437

 Score = 35.4 bits (80), Expect = 1.6
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 6/30 (20%)
 Frame = -1

Query: 286 DDELVTWLQYPLDD------CSDIFQHWPP 215
           D+E ++W+QYPLDD      CS++F   PP
Sbjct: 83  DEESISWIQYPLDDSLDKEFCSNLFMELPP 112


>tr|A5AGT8|A5AGT8_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_009521 PE=4 SV=1
          Length = 318

 Score = 35.0 bits (79), Expect = 2.1
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = +2

Query: 95  KRFVRGCSHHKRISFLPQ-NIFGVCSRGRGKRTHCRRGERSGRPVLEDVRAIIQWVLQPS 271
           K+    CSHH     + Q ++F V  RG   R  C RGER    + + + ++  + +Q S
Sbjct: 209 KKIQVACSHHPMCGKIFQMDVFQVEERGFYVRLACNRGERVAVSLYKALESLTGFXIQSS 268

Query: 272 NKLIISERTLMT 307
           N    SE  ++T
Sbjct: 269 NLATFSETFVLT 280


>tr|Q4WLS1|Q4WLS1_ASPFU Translation initiation factor eif-2b epsilon
           subunit, putative OS=Aspergillus fumigatus
           GN=AFUA_6G12530 PE=4 SV=1
          Length = 767

 Score = 35.0 bits (79), Expect = 2.1
 Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 2/126 (1%)
 Frame = -1

Query: 454 MSEQAGGHRFSDKQDEEEDHETIQNQPLDRLDNLAFLSSKNDSIVNAKSCHQSPFTDDEL 275
           + E   GH +  ++DE+ED +T+ N     + N+A LS   +SI +  S   S F     
Sbjct: 514 VGEGGEGHEYFQEEDEDED-DTVSNASSGLVYNMAQLSLSTESI-STLSSEMSHFGGSRS 571

Query: 274 VTW-LQYPLDDCSDIFQHWPPAPLTPSAMGALAPSSTANSKDVLRQETDSFMMTA-ASDK 101
            ++   Y  D+ +D F H   A +  S    +       + DV++ E  S  MTA ASD 
Sbjct: 572 ESFGTSYSEDEDADHFVHDAAASVYDSLKDGV-------TSDVVQLELVSLRMTANASDH 624

Query: 100 PLQIVV 83
            ++  V
Sbjct: 625 QVRRAV 630


>tr|B0Y8T9|B0Y8T9_ASPFC Translation initiation factor eif-2b epsilon
           subunit, putative OS=Aspergillus fumigatus (strain CEA10
           / CBS 144.89 / FGSC A1163) GN=AFUB_078530 PE=4 SV=1
          Length = 767

 Score = 35.0 bits (79), Expect = 2.1
 Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 2/126 (1%)
 Frame = -1

Query: 454 MSEQAGGHRFSDKQDEEEDHETIQNQPLDRLDNLAFLSSKNDSIVNAKSCHQSPFTDDEL 275
           + E   GH +  ++DE+ED +T+ N     + N+A LS   +SI +  S   S F     
Sbjct: 514 VGEGGEGHEYFQEEDEDED-DTVSNASSGLVYNMAQLSLSTESI-STLSSEMSHFGGSRS 571

Query: 274 VTW-LQYPLDDCSDIFQHWPPAPLTPSAMGALAPSSTANSKDVLRQETDSFMMTA-ASDK 101
            ++   Y  D+ +D F H   A +  S    +       + DV++ E  S  MTA ASD 
Sbjct: 572 ESFGTSYSEDEDADHFVHDAAASVYDSLKDGV-------TSDVVQLELVSLRMTANASDH 624

Query: 100 PLQIVV 83
            ++  V
Sbjct: 625 QVRRAV 630


>tr|A5AZT1|A5AZT1_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_023382 PE=4 SV=1
          Length = 627

 Score = 34.7 bits (78), Expect = 2.7
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
 Frame = -1

Query: 415 QDEEEDHETIQNQPLDRLDNLAFLSSKNDSIVNAKSCHQSPFTDDELVTWLQYPLDD--- 245
           +D++  H T  N  + +  ++ F+   ND  ++  S       DD++V WL YP+D+   
Sbjct: 68  RDKDTGHGT--NSKMGKFGSMDFIL--NDFPLSVPSAEMGLSQDDDMVPWLNYPIDESLQ 123

Query: 244 ---CSDIFQ 227
              CSD  Q
Sbjct: 124 HDYCSDFLQ 132