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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917007
Clone id YMU001_000094_F07
Library
Length 500
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000094_F07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTGTGATTCAAAATACTCAAACATGCTTCGCTGGCAAAAAGAACATACACTTCGCCTTGT
CAGGTACTGGACCAGATTAAGGCATACATGATATAATTTTTCCATTGAAGACCTGCAAGT
CCTCCACCAGACTGAAGGTACCCATAACAATAGCAAGTGTGCAGGACAAGGAAGAGCTGA
TTCCTTGGTCAAAGCAGAACAACAGATCATCAATGTTGTAGGTACCACAGCAGGACTAGA
CGCTGACCAATCCCGGGCATATTTCAGGACTCTCTCATACCAGTAAGATGTAACCACACC
CCTGAATCCTACAGGAACATGTAGCATTGAGCACCTTTCAAAGATCTGATCACAAGACTC
CGAGACAAGCCCTGCGATCAAGAGAGACTTGGACATTTAAGCTTCACATGATGAGCCTTA
AAGATAAAAGTTCCATAGGAAACACGAATGTACAAAGGTGTATCTAAATGTGATGCATTG
GCTATCAAATGGCTTGCCAG
■■Homology search results ■■ -
sp_hit_id Q08365
Definition sp|Q08365|RR3_CHLRE 30S ribosomal protein S3, chloroplastic OS=Chlamydomonas reinhardtii
Align length 52
Score (bit) 34.3
E-value 0.33
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917007|Adiantum capillus-veneris mRNA, clone:
YMU001_000094_F07.
         (500 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q08365|RR3_CHLRE 30S ribosomal protein S3, chloroplastic OS=C...    34   0.33 
sp|Q5UQN6|YL442_MIMIV Uncharacterized protein L442 OS=Acanthamoe...    32   1.6  
sp|Q9SSQ4|FRS6_ARATH Protein FAR1-RELATED SEQUENCE 6 OS=Arabidop...    32   1.6  
sp|P04990|THRC_BACSU Threonine synthase OS=Bacillus subtilis GN=...    31   3.7  
sp|P70351|EZH1_MOUSE Histone-lysine N-methyltransferase EZH1 OS=...    31   3.7  
sp|P09123|THRC_BACSL Threonine synthase OS=Bacillus sp. (strain ...    30   4.8  
sp|Q66121|ORF1A_CMVIX Replication protein 1a OS=Cucumber mosaic ...    30   6.3  
sp|Q83270|ORF1A_CMVII Replication protein 1a OS=Cucumber mosaic ...    30   6.3  
sp|Q552M6|ZDHC7_DICDI Putative ZDHHC-type palmitoyltransferase 7...    30   8.2  
sp|P18561|SYRM_RHIME HTH-type transcriptional regulator syrM OS=...    30   8.2  

>sp|Q08365|RR3_CHLRE 30S ribosomal protein S3, chloroplastic
           OS=Chlamydomonas reinhardtii GN=rps3 PE=1 SV=2
          Length = 712

 Score = 34.3 bits (77), Expect = 0.33
 Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
 Frame = -3

Query: 315 PVGFRGVVT----SYWYERVLKYARDWSASSPAVVPTTLMICCSALTKESAL 172
           P+GFR  +T    S W+ R  KYA   S     ++ TTL+   S L KESAL
Sbjct: 7   PLGFRVGITKKHQSQWFARFQKYAYSQSVFEDHMLRTTLVNLFSNLEKESAL 58


>sp|Q5UQN6|YL442_MIMIV Uncharacterized protein L442 OS=Acanthamoeba
            polyphaga mimivirus GN=MIMI_L442 PE=1 SV=1
          Length = 1259

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +1

Query: 265  QDSLIPVRCNHTPESYRNM*H*APFKDLITRLRDKPCDQERL 390
            Q +L P       +S+    +  P+KD++ RLR+  CD ERL
Sbjct: 1006 QSTLCPTSYPKVNDSFNTYSYLNPYKDVVYRLRNTTCDLERL 1047


>sp|Q9SSQ4|FRS6_ARATH Protein FAR1-RELATED SEQUENCE 6 OS=Arabidopsis
           thaliana GN=FRS6 PE=2 SV=1
          Length = 703

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 28/121 (23%), Positives = 50/121 (41%), Gaps = 11/121 (9%)
 Frame = -3

Query: 372 GLVSESCDQIFERCSMLHVPVGFRGVVTSYWYERVLKYARDWSASSPAVVPTTLMICCSA 193
           G+  ES D  +   +     VGFR  V + W++R  K    + A          ++CCS+
Sbjct: 88  GMEFESYDDAYNYYNCYASEVGFRVRVKNSWFKRRSK--EKYGA----------VLCCSS 135

Query: 192 -----------LTKESALPCPAHLLLLWVPSVWWRTCRSSMEKLYHVCLNLVQYLTRRSV 46
                      + KE+   CPA + +  V S  WR    +++  + +   L + + R+  
Sbjct: 136 QGFKRINDVNRVRKETRTGCPAMIRMRQVDSKRWRVVEVTLDHNHLLGCKLYKSVKRKRK 195

Query: 45  C 43
           C
Sbjct: 196 C 196


>sp|P04990|THRC_BACSU Threonine synthase OS=Bacillus subtilis
           GN=thrC PE=3 SV=1
          Length = 352

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 360 ESCDQIFERCSMLHVPVGFRGVVTSYW 280
           E C+Q+ E   +L +PVG  G +T+YW
Sbjct: 168 EVCEQLGEAPDVLAIPVGNAGNITAYW 194


>sp|P70351|EZH1_MOUSE Histone-lysine N-methyltransferase EZH1 OS=Mus
           musculus GN=Ezh1 PE=1 SV=1
          Length = 747

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = -3

Query: 252 DWSASSPAVVPTTLMICCSALTKESALPCPAHLLLLWVPS--VWWRTCRSSMEKLYH 88
           DW++SS           C   TK+ A P PA L ++  PS  V W     S+ +++H
Sbjct: 395 DWASSSSEANSR-----CQTPTKQKASPAPAQLCVVEAPSEPVEWTGAEESLFRVFH 446


>sp|P09123|THRC_BACSL Threonine synthase OS=Bacillus sp. (strain
           ULM1) GN=thrC PE=3 SV=1
          Length = 352

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 360 ESCDQIFERCSMLHVPVGFRGVVTSYW 280
           E CDQ+     +L +PVG  G +T+YW
Sbjct: 168 EICDQLQNAPDVLAIPVGNAGNITAYW 194


>sp|Q66121|ORF1A_CMVIX Replication protein 1a OS=Cucumber mosaic
           virus (strain Ixora) GN=RNA1 PE=3 SV=1
          Length = 993

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -2

Query: 226 GTYNIDDLLFCFDQGISSSLSCTLAIVMGTFSLVEDLQVFNGKIIS 89
           GT   D  +   DQG+   L+C    +   FS  ED+   +GK+ S
Sbjct: 209 GTMMFDGAMMFDDQGVIPELNCQWRKIRSAFSETEDVTPLSGKLNS 254


>sp|Q83270|ORF1A_CMVII Replication protein 1a OS=Cucumber mosaic
           virus (strain Iizuka) GN=RNA1 PE=3 SV=1
          Length = 993

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -2

Query: 226 GTYNIDDLLFCFDQGISSSLSCTLAIVMGTFSLVEDLQVFNGKIIS 89
           GT   D  +   DQG+   L+C    +   FS  ED+   +GK+ S
Sbjct: 209 GTMMFDGAMMFDDQGVIPELNCQWRKIRSAFSETEDVTPLSGKLNS 254


>sp|Q552M6|ZDHC7_DICDI Putative ZDHHC-type palmitoyltransferase 7
           OS=Dictyostelium discoideum GN=DDB_G0276017 PE=2 SV=1
          Length = 438

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 23/73 (31%), Positives = 35/73 (47%)
 Frame = -3

Query: 345 IFERCSMLHVPVGFRGVVTSYWYERVLKYARDWSASSPAVVPTTLMICCSALTKESALPC 166
           +F     L + +G R +VT +  E  +K   +W  S+ A++P TL+I    L    AL C
Sbjct: 296 LFLLAESLLLLLGLRIIVTGFVRENSIK---EWIFSNIAIIPPTLLI-FGGLCMPFALFC 351

Query: 165 PAHLLLLWVPSVW 127
               L+L   S W
Sbjct: 352 FHSFLILTNQSSW 364


>sp|P18561|SYRM_RHIME HTH-type transcriptional regulator syrM
           OS=Rhizobium meliloti GN=syrM PE=4 SV=1
          Length = 326

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 26/97 (26%), Positives = 41/97 (42%)
 Frame = -3

Query: 390 KSLLIAGLVSESCDQIFERCSMLHVPVGFRGVVTSYWYERVLKYARDWSASSPAVVPTTL 211
           + + IA    E   QI++R + L +  G   VV++     VL  A D    S  VVP+ +
Sbjct: 218 RHVAIASEPDELFGQIYDRLTKLGLQRGDPMVVSTVLTAAVLIAATD----SVLVVPSRV 273

Query: 210 MICCSALTKESALPCPAHLLLLWVPSVWWRTCRSSME 100
               +A+   + +P P  L    V  +W   C    E
Sbjct: 274 ATRVAAMLSLAVIPPPVELRPYEVALIWHERCHRDPE 310
tr_hit_id A7SQW2
Definition tr|A7SQW2|A7SQW2_NEMVE Predicted protein (Fragment) OS=Nematostella vectensis
Align length 42
Score (bit) 34.3
E-value 3.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917007|Adiantum capillus-veneris mRNA, clone:
YMU001_000094_F07.
         (500 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7SQW2|A7SQW2_NEMVE Predicted protein (Fragment) OS=Nematoste...    34   3.3  
tr|B8BFS0|B8BFS0_ORYSI Putative uncharacterized protein OS=Oryza...    33   5.7  
tr|Q0F8X9|Q0F8X9_9RHOB Transcriptional regulator, GntR family pr...    33   7.4  

>tr|A7SQW2|A7SQW2_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g128003 PE=3 SV=1
          Length = 231

 Score = 34.3 bits (77), Expect = 3.3
 Identities = 14/42 (33%), Positives = 26/42 (61%)
 Frame = +2

Query: 11  KYSNMLRWQKEHTLRLVRYWTRLRHT*YNFSIEDLQVLHQTE 136
           K S  +RW +   +R+ + WTR++H   +FS+ +LQ  H+ +
Sbjct: 73  KRSGKVRWVEVRFVRIPQAWTRVQHVRNDFSVLELQQTHKRD 114


>tr|B8BFS0|B8BFS0_ORYSI Putative uncharacterized protein OS=Oryza
            sativa subsp. indica GN=OsI_32774 PE=4 SV=1
          Length = 1837

 Score = 33.5 bits (75), Expect = 5.7
 Identities = 26/104 (25%), Positives = 47/104 (45%)
 Frame = -3

Query: 360  ESCDQIFERCSMLHVPVGFRGVVTSYWYERVLKYARDWSASSPAVVPTTLMICCSALTKE 181
            +S + + E+ S+ +  +G    + SY      K   +   S PA V +          + 
Sbjct: 969  DSVETVDEKKSLRYCCLGTIFEIMSYELFLQGKLLTETKTSDPAPVGS------KEQKEP 1022

Query: 180  SALPCPAHLLLLWVPSVWWRTCRSSMEKLYHVCLNLVQYLTRRS 49
            S  PCP+ ++L W  S     C+SS++     CL +++ LT+ S
Sbjct: 1023 SVAPCPSDIVLKWFDSTTMEDCKSSIK--VASCLCIIRLLTKLS 1064


>tr|Q0F8X9|Q0F8X9_9RHOB Transcriptional regulator, GntR family
           protein OS=Rhodobacterales bacterium HTCC2255
           GN=OM2255_13639 PE=4 SV=1
          Length = 216

 Score = 33.1 bits (74), Expect = 7.4
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +2

Query: 95  NFSIEDLQVLHQTEGTHNNSKCAGQGRADSLVKAEQQIINVVGTTAG 235
           NF IE LQ +H+T     N+  A  GR +S ++    I+N +    G
Sbjct: 141 NFLIEQLQQVHRTMALLANTSLAADGRGESALQEHFDIVNAIEAKDG 187