BP917010
Clone id YMU001_000094_F10
Library
Length 487
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000094_F10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
CTCATCCCAATGCAAAAAATTCTATTCAAAGGCATGATTTGCCGAAGCAAATCATGTTGA
TTACAGCGGGGATCAATATGAAAATTGCAAGAGTTACAAAGTTATAAGATCGATAGCATA
GTTCCATCTATCCCCACAGTCCTCCTCGACCTTCAATTTGTCTTCCATTCTCTTCCCAAT
CTGCGGACATTCATTACAATAAGCATCTAATGATCGACAAACCATGATGTATTGAAAATG
TGGTGGAAGGATTCTCACCTTGTGACCTTGTAAACGAAATTGTGCTTGTTGAAGGGCCTC
AAAACCCATAATAACCAAATGTTCTCGAACATTACTGAGAGTCCAATGCTTGTTCACTTG
GACTGCCTCCAAAGCATCGTTGGGCATCTTCACTGCAATGTCAAAACTTGCAATAGCGCC
GTCTACACTCTGTAAGGGAGTCCATACTCCAAGCTTGCACATCCAACGATCATAGTGAAA
TCGTATG
■■Homology search results ■■ -
sp_hit_id P42452
Definition sp|P42452|HEM4_SYNE7 Uroporphyrinogen-III synthase OS=Synechococcus elongatus (strain PCC 7942)
Align length 75
Score (bit) 33.1
E-value 0.69
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917010|Adiantum capillus-veneris mRNA, clone:
YMU001_000094_F10.
(487 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P42452|HEM4_SYNE7 Uroporphyrinogen-III synthase OS=Synechococ... 33 0.69
sp|Q46811|YGFK_ECOLI Uncharacterized protein ygfK OS=Escherichia... 31 3.4
sp|Q8XD75|YGFK_ECO57 Uncharacterized protein ygfK OS=Escherichia... 31 3.4
sp|B4MPK3|KTU_DROWI Protein kintoun OS=Drosophila willistoni GN=... 31 3.4
sp|P41556|RPOA1_METVS DNA-directed RNA polymerase subunit A' OS=... 30 4.5
sp|Q9NY15|STAB1_HUMAN Stabilin-1 OS=Homo sapiens GN=STAB1 PE=1 SV=2 30 5.8
sp|Q7W0S9|RSMG_BORPE Ribosomal RNA small subunit methyltransfera... 29 9.9
sp|Q7W2I0|RSMG_BORPA Ribosomal RNA small subunit methyltransfera... 29 9.9
sp|Q7WRF0|RSMG_BORBR Ribosomal RNA small subunit methyltransfera... 29 9.9
sp|Q306W7|POLS_EEEV8 Structural polyprotein OS=Eastern equine en... 29 9.9
sp|Q6NVM6|NOL10_XENTR Nucleolar protein 10 OS=Xenopus tropicalis... 29 9.9
sp|Q9UK61|CC063_HUMAN Uncharacterized protein C3orf63 OS=Homo sa... 29 9.9

>sp|P42452|HEM4_SYNE7 Uroporphyrinogen-III synthase OS=Synechococcus
elongatus (strain PCC 7942) GN=hemD PE=4 SV=1
Length = 264

Score = 33.1 bits (74), Expect = 0.69
Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Frame = -2

Query: 444 WTPLQSVDGAIASFDIAVKMPNDALEAVQ-----VNKHWTLSNVREHLVIMGFEALQQAQ 280
W PL AIA FD + +A+EAVQ K W S+V + ++G + Q
Sbjct: 48 WLPLDEAIAAIADFDWLILASANAVEAVQQRLAAQQKSW--SDVPCAIAVVGQKTAQ--V 103

Query: 279 FRLQGHKVRILPPHF 235
QG K +PP F
Sbjct: 104 LAAQGGKADYIPPEF 118


>sp|Q46811|YGFK_ECOLI Uncharacterized protein ygfK OS=Escherichia coli
(strain K12) GN=ygfK PE=4 SV=1
Length = 1032

Score = 30.8 bits (68), Expect = 3.4
Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Frame = -2

Query: 258 VRILPPHFQYIMVCRSLDAYCNE-------CPQIGKRMEDKLKV 148
V I P FQ LDAYCNE CP GK +DK+ V
Sbjct: 918 VSIAVPGFQNRFQTLHLDAYCNECGNCAQFCPWNGKPYKDKITV 961


>sp|Q8XD75|YGFK_ECO57 Uncharacterized protein ygfK OS=Escherichia coli
O157:H7 GN=ygfK PE=4 SV=1
Length = 1032

Score = 30.8 bits (68), Expect = 3.4
Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Frame = -2

Query: 258 VRILPPHFQYIMVCRSLDAYCNE-------CPQIGKRMEDKLKV 148
V I P FQ LDAYCNE CP GK +DK+ V
Sbjct: 918 VSIAVPGFQNRFQTLHLDAYCNECGNCAQFCPWNGKPYKDKITV 961


>sp|B4MPK3|KTU_DROWI Protein kintoun OS=Drosophila willistoni
GN=Ppi20 PE=3 SV=1
Length = 1204

Score = 30.8 bits (68), Expect = 3.4
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -1

Query: 448 SMDSLTECRRRYCKF*HCSEDAQRCFGGSPSEQALDSQ*CSRT 320
S S+ +C Y CS +A R FGG P E + S+ C +T
Sbjct: 680 SCSSIDDCSSSY----PCSVEASRSFGGIPEEDSSLSESCKKT 718


>sp|P41556|RPOA1_METVS DNA-directed RNA polymerase subunit A'
OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM
1224) GN=rpoA1 PE=3 SV=1
Length = 889

Score = 30.4 bits (67), Expect = 4.5
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 20/73 (27%)
Frame = -2

Query: 261 KVRILPPHFQYIMVCRS-------------LDAYCNECPQI-------GKRMEDKLKVEE 142
+V P HF +I + +S L A C C ++ + +E LK+EE
Sbjct: 68 RVGTCPGHFGHIELSKSVIHIGFAKDIYKLLKAVCPHCGKVTVTEIKRDEYLEKMLKLEE 127

Query: 141 DCGDRWNYAIDLI 103
D GD W + DL+
Sbjct: 128 DGGDPWTLSDDLL 140


>sp|Q9NY15|STAB1_HUMAN Stabilin-1 OS=Homo sapiens GN=STAB1 PE=1 SV=2
Length = 2570

Score = 30.0 bits (66), Expect = 5.8
Identities = 22/73 (30%), Positives = 30/73 (41%)
Frame = -2

Query: 381 NDALEAVQVNKHWTLSNVREHLVIMGFEALQQAQFRLQGHKVRILPPHFQYIMVCRSLDA 202
N +LEA + H VR H+V+ EAL R GH+ +L P + S
Sbjct: 1170 NRSLEAQGNSSHLDADTVRHHVVLG--EALSMETLRKGGHRNSLLGPAHWIVFYNHSGQP 1227

Query: 201 YCNECPQIGKRME 163
N P G +E
Sbjct: 1228 EVNHVPLEGPMLE 1240


>sp|Q7W0S9|RSMG_BORPE Ribosomal RNA small subunit methyltransferase
G OS=Bordetella pertussis GN=rsmG PE=3 SV=1
Length = 230

Score = 29.3 bits (64), Expect = 9.9
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = -2

Query: 390 KMPNDALEAVQVNKHWTLSNVREHLVIMGFEA 295
K+P+D ++A+Q + HWT+ + E LV+ +A
Sbjct: 186 KVPDDEIQALQQHGHWTVERI-EPLVVPALDA 216


>sp|Q7W2I0|RSMG_BORPA Ribosomal RNA small subunit methyltransferase
G OS=Bordetella parapertussis GN=rsmG PE=3 SV=1
Length = 230

Score = 29.3 bits (64), Expect = 9.9
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = -2

Query: 390 KMPNDALEAVQVNKHWTLSNVREHLVIMGFEA 295
K+P+D ++A+Q + HWT+ + E LV+ +A
Sbjct: 186 KVPDDEIQALQQHGHWTVERI-EPLVVPALDA 216


>sp|Q7WRF0|RSMG_BORBR Ribosomal RNA small subunit methyltransferase
G OS=Bordetella bronchiseptica GN=rsmG PE=3 SV=1
Length = 210

Score = 29.3 bits (64), Expect = 9.9
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = -2

Query: 390 KMPNDALEAVQVNKHWTLSNVREHLVIMGFEA 295
K+P+D ++A+Q + HWT+ + E LV+ +A
Sbjct: 166 KVPDDEIQALQQHGHWTVERI-EPLVVPALDA 196


>sp|Q306W7|POLS_EEEV8 Structural polyprotein OS=Eastern equine
encephalitis virus (strain PE-3.0815) PE=3 SV=1
Length = 1242

Score = 29.3 bits (64), Expect = 9.9
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = -2

Query: 354 NKHWTLSNVREHLVIMGFEALQQAQFRLQGHKV-RILPPHFQYIMVCRSLDAYCNECPQI 178
N H TLS + ++ ++ L A + G + R L HF + R A C+ C
Sbjct: 290 NPHETLSMLEQNYDSQAYDLLLDAAVKCNGRRTRRDLETHFTQYKLARPYIADCSNCGH- 348

Query: 177 GKRMEDKLKVEEDCGD 130
R + + +E+ GD
Sbjct: 349 -GRCDSPIAIEDIRGD 363


tr_hit_id A9T0M5
Definition tr|A9T0M5|A9T0M5_PHYPA Tomosyn-like protein OS=Physcomitrella patens subsp. patens
Align length 74
Score (bit) 35.0
E-value 1.8
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917010|Adiantum capillus-veneris mRNA, clone:
YMU001_000094_F10.
(487 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9T0M5|A9T0M5_PHYPA Tomosyn-like protein OS=Physcomitrella pa... 35 1.8
tr|Q7PX63|Q7PX63_ANOGA AGAP001232-PA OS=Anopheles gambiae GN=AGA... 35 2.5
tr|A1THR5|A1THR5_MYCVP Putative uncharacterized protein OS=Mycob... 33 5.3
tr|Q5N2N9|Q5N2N9_SYNP6 Porphyrin biosynthesis protein HemD OS=Sy... 33 7.2
tr|A0DHU5|A0DHU5_PARTE Chromosome undetermined scaffold_50, whol... 33 9.3

>tr|A9T0M5|A9T0M5_PHYPA Tomosyn-like protein OS=Physcomitrella
patens subsp. patens GN=TYN12 PE=4 SV=1
Length = 1389

Score = 35.0 bits (79), Expect = 1.8
Identities = 24/74 (32%), Positives = 36/74 (48%)
Frame = +3

Query: 3 HPNAKNSIQRHDLPKQIMLITAGINMKIARVTKL*DR*HSSIYPHSPPRPSICLPFSSQS 182
H NA+N ++ DL KQ + + KI T++ I+P +PSIC SS S
Sbjct: 300 HINAENDVEVWDLEKQTLGCSLRWESKITAFTEIPGTQFMLIHPSFFLKPSICCSVSS-S 358

Query: 183 ADIHYNKHLMIDKP 224
D Y +++D P
Sbjct: 359 QDRDYKLIVLVDAP 372


>tr|Q7PX63|Q7PX63_ANOGA AGAP001232-PA OS=Anopheles gambiae
GN=AGAP001232 PE=4 SV=2
Length = 413

Score = 34.7 bits (78), Expect = 2.5
Identities = 25/90 (27%), Positives = 45/90 (50%)
Frame = -2

Query: 417 AIASFDIAVKMPNDALEAVQVNKHWTLSNVREHLVIMGFEALQQAQFRLQGHKVRILPPH 238
AI D VK+PNDA + +N++ N+ L + F+ALQ + HKV ++
Sbjct: 200 AIEESDQVVKLPNDAFVFLSINRYERKKNLA--LALHAFKALQDMVSSSEWHKVCLIMAG 257

Query: 237 FQYIMVCRSLDAYCNECPQIGKRMEDKLKV 148
V +++ Y +E ++ + M+ + KV
Sbjct: 258 GYDDRVMENVEHY-DELEELAEDMQIRAKV 286


>tr|A1THR5|A1THR5_MYCVP Putative uncharacterized protein
OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1)
GN=Mvan_5957 PE=4 SV=1
Length = 572

Score = 33.5 bits (75), Expect = 5.3
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +3

Query: 135 HSPPRPSICLPFSSQSADIHYNKHLMID 218
H P R S CL S++SA +H +HL+ID
Sbjct: 249 HKPYRDSFCLAASNESARLHIFRHLLID 276


>tr|Q5N2N9|Q5N2N9_SYNP6 Porphyrin biosynthesis protein HemD
OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 /
SAUG 1402/1) GN=hemD PE=4 SV=1
Length = 264

Score = 33.1 bits (74), Expect = 7.2
Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Frame = -2

Query: 444 WTPLQSVDGAIASFDIAVKMPNDALEAVQ-----VNKHWTLSNVREHLVIMGFEALQQAQ 280
W PL AIA FD + +A+EAVQ K W S+V + ++G + Q
Sbjct: 48 WLPLDEAIAAIADFDWLILASANAVEAVQQRLAAQQKSW--SDVPCAIAVVGQKTAQ--V 103

Query: 279 FRLQGHKVRILPPHF 235
QG K +PP F
Sbjct: 104 LAAQGGKADYIPPEF 118


>tr|A0DHU5|A0DHU5_PARTE Chromosome undetermined scaffold_50, whole
genome shotgun sequence OS=Paramecium tetraurelia
GN=GSPATT00016999001 PE=4 SV=1
Length = 503

Score = 32.7 bits (73), Expect = 9.3
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 6/94 (6%)
Frame = -2

Query: 366 AVQVNKHWTLSNVREHLVIMGFEALQQAQFRLQGHKVRIL------PPHFQYIMVCRSLD 205
A+Q +K+W LSN+ +H I + A V +L F I +CR+L
Sbjct: 360 AIQKSKNWLLSNMLKHYRIEADDLFMMAARYDNLGAVMLLINNNYPVEEFSKIAICRNLK 419

Query: 204 AYCNECPQIGKRMEDKLKVEEDCGDRWNYAIDLI 103
Y ++ +LK + D + +NY + LI
Sbjct: 420 IYRVLKSYENYNIQKQLKKQMDSKNNFNYEVKLI 453