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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917010
Clone id YMU001_000094_F10
Library
Length 487
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000094_F10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CTCATCCCAATGCAAAAAATTCTATTCAAAGGCATGATTTGCCGAAGCAAATCATGTTGA
TTACAGCGGGGATCAATATGAAAATTGCAAGAGTTACAAAGTTATAAGATCGATAGCATA
GTTCCATCTATCCCCACAGTCCTCCTCGACCTTCAATTTGTCTTCCATTCTCTTCCCAAT
CTGCGGACATTCATTACAATAAGCATCTAATGATCGACAAACCATGATGTATTGAAAATG
TGGTGGAAGGATTCTCACCTTGTGACCTTGTAAACGAAATTGTGCTTGTTGAAGGGCCTC
AAAACCCATAATAACCAAATGTTCTCGAACATTACTGAGAGTCCAATGCTTGTTCACTTG
GACTGCCTCCAAAGCATCGTTGGGCATCTTCACTGCAATGTCAAAACTTGCAATAGCGCC
GTCTACACTCTGTAAGGGAGTCCATACTCCAAGCTTGCACATCCAACGATCATAGTGAAA
TCGTATG
■■Homology search results ■■ -
sp_hit_id P42452
Definition sp|P42452|HEM4_SYNE7 Uroporphyrinogen-III synthase OS=Synechococcus elongatus (strain PCC 7942)
Align length 75
Score (bit) 33.1
E-value 0.69
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917010|Adiantum capillus-veneris mRNA, clone:
YMU001_000094_F10.
         (487 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P42452|HEM4_SYNE7 Uroporphyrinogen-III synthase OS=Synechococ...    33   0.69 
sp|Q46811|YGFK_ECOLI Uncharacterized protein ygfK OS=Escherichia...    31   3.4  
sp|Q8XD75|YGFK_ECO57 Uncharacterized protein ygfK OS=Escherichia...    31   3.4  
sp|B4MPK3|KTU_DROWI Protein kintoun OS=Drosophila willistoni GN=...    31   3.4  
sp|P41556|RPOA1_METVS DNA-directed RNA polymerase subunit A' OS=...    30   4.5  
sp|Q9NY15|STAB1_HUMAN Stabilin-1 OS=Homo sapiens GN=STAB1 PE=1 SV=2    30   5.8  
sp|Q7W0S9|RSMG_BORPE Ribosomal RNA small subunit methyltransfera...    29   9.9  
sp|Q7W2I0|RSMG_BORPA Ribosomal RNA small subunit methyltransfera...    29   9.9  
sp|Q7WRF0|RSMG_BORBR Ribosomal RNA small subunit methyltransfera...    29   9.9  
sp|Q306W7|POLS_EEEV8 Structural polyprotein OS=Eastern equine en...    29   9.9  
sp|Q6NVM6|NOL10_XENTR Nucleolar protein 10 OS=Xenopus tropicalis...    29   9.9  
sp|Q9UK61|CC063_HUMAN Uncharacterized protein C3orf63 OS=Homo sa...    29   9.9  

>sp|P42452|HEM4_SYNE7 Uroporphyrinogen-III synthase OS=Synechococcus
           elongatus (strain PCC 7942) GN=hemD PE=4 SV=1
          Length = 264

 Score = 33.1 bits (74), Expect = 0.69
 Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
 Frame = -2

Query: 444 WTPLQSVDGAIASFDIAVKMPNDALEAVQ-----VNKHWTLSNVREHLVIMGFEALQQAQ 280
           W PL     AIA FD  +    +A+EAVQ       K W  S+V   + ++G +  Q   
Sbjct: 48  WLPLDEAIAAIADFDWLILASANAVEAVQQRLAAQQKSW--SDVPCAIAVVGQKTAQ--V 103

Query: 279 FRLQGHKVRILPPHF 235
              QG K   +PP F
Sbjct: 104 LAAQGGKADYIPPEF 118


>sp|Q46811|YGFK_ECOLI Uncharacterized protein ygfK OS=Escherichia coli
            (strain K12) GN=ygfK PE=4 SV=1
          Length = 1032

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
 Frame = -2

Query: 258  VRILPPHFQYIMVCRSLDAYCNE-------CPQIGKRMEDKLKV 148
            V I  P FQ       LDAYCNE       CP  GK  +DK+ V
Sbjct: 918  VSIAVPGFQNRFQTLHLDAYCNECGNCAQFCPWNGKPYKDKITV 961


>sp|Q8XD75|YGFK_ECO57 Uncharacterized protein ygfK OS=Escherichia coli
            O157:H7 GN=ygfK PE=4 SV=1
          Length = 1032

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
 Frame = -2

Query: 258  VRILPPHFQYIMVCRSLDAYCNE-------CPQIGKRMEDKLKV 148
            V I  P FQ       LDAYCNE       CP  GK  +DK+ V
Sbjct: 918  VSIAVPGFQNRFQTLHLDAYCNECGNCAQFCPWNGKPYKDKITV 961


>sp|B4MPK3|KTU_DROWI Protein kintoun OS=Drosophila willistoni
           GN=Ppi20 PE=3 SV=1
          Length = 1204

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -1

Query: 448 SMDSLTECRRRYCKF*HCSEDAQRCFGGSPSEQALDSQ*CSRT 320
           S  S+ +C   Y     CS +A R FGG P E +  S+ C +T
Sbjct: 680 SCSSIDDCSSSY----PCSVEASRSFGGIPEEDSSLSESCKKT 718


>sp|P41556|RPOA1_METVS DNA-directed RNA polymerase subunit A'
           OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM
           1224) GN=rpoA1 PE=3 SV=1
          Length = 889

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 20/73 (27%)
 Frame = -2

Query: 261 KVRILPPHFQYIMVCRS-------------LDAYCNECPQI-------GKRMEDKLKVEE 142
           +V   P HF +I + +S             L A C  C ++        + +E  LK+EE
Sbjct: 68  RVGTCPGHFGHIELSKSVIHIGFAKDIYKLLKAVCPHCGKVTVTEIKRDEYLEKMLKLEE 127

Query: 141 DCGDRWNYAIDLI 103
           D GD W  + DL+
Sbjct: 128 DGGDPWTLSDDLL 140


>sp|Q9NY15|STAB1_HUMAN Stabilin-1 OS=Homo sapiens GN=STAB1 PE=1 SV=2
          Length = 2570

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 22/73 (30%), Positives = 30/73 (41%)
 Frame = -2

Query: 381  NDALEAVQVNKHWTLSNVREHLVIMGFEALQQAQFRLQGHKVRILPPHFQYIMVCRSLDA 202
            N +LEA   + H     VR H+V+   EAL     R  GH+  +L P    +    S   
Sbjct: 1170 NRSLEAQGNSSHLDADTVRHHVVLG--EALSMETLRKGGHRNSLLGPAHWIVFYNHSGQP 1227

Query: 201  YCNECPQIGKRME 163
              N  P  G  +E
Sbjct: 1228 EVNHVPLEGPMLE 1240


>sp|Q7W0S9|RSMG_BORPE Ribosomal RNA small subunit methyltransferase
           G OS=Bordetella pertussis GN=rsmG PE=3 SV=1
          Length = 230

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = -2

Query: 390 KMPNDALEAVQVNKHWTLSNVREHLVIMGFEA 295
           K+P+D ++A+Q + HWT+  + E LV+   +A
Sbjct: 186 KVPDDEIQALQQHGHWTVERI-EPLVVPALDA 216


>sp|Q7W2I0|RSMG_BORPA Ribosomal RNA small subunit methyltransferase
           G OS=Bordetella parapertussis GN=rsmG PE=3 SV=1
          Length = 230

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = -2

Query: 390 KMPNDALEAVQVNKHWTLSNVREHLVIMGFEA 295
           K+P+D ++A+Q + HWT+  + E LV+   +A
Sbjct: 186 KVPDDEIQALQQHGHWTVERI-EPLVVPALDA 216


>sp|Q7WRF0|RSMG_BORBR Ribosomal RNA small subunit methyltransferase
           G OS=Bordetella bronchiseptica GN=rsmG PE=3 SV=1
          Length = 210

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = -2

Query: 390 KMPNDALEAVQVNKHWTLSNVREHLVIMGFEA 295
           K+P+D ++A+Q + HWT+  + E LV+   +A
Sbjct: 166 KVPDDEIQALQQHGHWTVERI-EPLVVPALDA 196


>sp|Q306W7|POLS_EEEV8 Structural polyprotein OS=Eastern equine
           encephalitis virus (strain PE-3.0815) PE=3 SV=1
          Length = 1242

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
 Frame = -2

Query: 354 NKHWTLSNVREHLVIMGFEALQQAQFRLQGHKV-RILPPHFQYIMVCRSLDAYCNECPQI 178
           N H TLS + ++     ++ L  A  +  G +  R L  HF    + R   A C+ C   
Sbjct: 290 NPHETLSMLEQNYDSQAYDLLLDAAVKCNGRRTRRDLETHFTQYKLARPYIADCSNCGH- 348

Query: 177 GKRMEDKLKVEEDCGD 130
             R +  + +E+  GD
Sbjct: 349 -GRCDSPIAIEDIRGD 363
tr_hit_id A9T0M5
Definition tr|A9T0M5|A9T0M5_PHYPA Tomosyn-like protein OS=Physcomitrella patens subsp. patens
Align length 74
Score (bit) 35.0
E-value 1.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917010|Adiantum capillus-veneris mRNA, clone:
YMU001_000094_F10.
         (487 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9T0M5|A9T0M5_PHYPA Tomosyn-like protein OS=Physcomitrella pa...    35   1.8  
tr|Q7PX63|Q7PX63_ANOGA AGAP001232-PA OS=Anopheles gambiae GN=AGA...    35   2.5  
tr|A1THR5|A1THR5_MYCVP Putative uncharacterized protein OS=Mycob...    33   5.3  
tr|Q5N2N9|Q5N2N9_SYNP6 Porphyrin biosynthesis protein HemD OS=Sy...    33   7.2  
tr|A0DHU5|A0DHU5_PARTE Chromosome undetermined scaffold_50, whol...    33   9.3  

>tr|A9T0M5|A9T0M5_PHYPA Tomosyn-like protein OS=Physcomitrella
           patens subsp. patens GN=TYN12 PE=4 SV=1
          Length = 1389

 Score = 35.0 bits (79), Expect = 1.8
 Identities = 24/74 (32%), Positives = 36/74 (48%)
 Frame = +3

Query: 3   HPNAKNSIQRHDLPKQIMLITAGINMKIARVTKL*DR*HSSIYPHSPPRPSICLPFSSQS 182
           H NA+N ++  DL KQ +  +     KI   T++       I+P    +PSIC   SS S
Sbjct: 300 HINAENDVEVWDLEKQTLGCSLRWESKITAFTEIPGTQFMLIHPSFFLKPSICCSVSS-S 358

Query: 183 ADIHYNKHLMIDKP 224
            D  Y   +++D P
Sbjct: 359 QDRDYKLIVLVDAP 372


>tr|Q7PX63|Q7PX63_ANOGA AGAP001232-PA OS=Anopheles gambiae
           GN=AGAP001232 PE=4 SV=2
          Length = 413

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 25/90 (27%), Positives = 45/90 (50%)
 Frame = -2

Query: 417 AIASFDIAVKMPNDALEAVQVNKHWTLSNVREHLVIMGFEALQQAQFRLQGHKVRILPPH 238
           AI   D  VK+PNDA   + +N++    N+   L +  F+ALQ      + HKV ++   
Sbjct: 200 AIEESDQVVKLPNDAFVFLSINRYERKKNLA--LALHAFKALQDMVSSSEWHKVCLIMAG 257

Query: 237 FQYIMVCRSLDAYCNECPQIGKRMEDKLKV 148
                V  +++ Y +E  ++ + M+ + KV
Sbjct: 258 GYDDRVMENVEHY-DELEELAEDMQIRAKV 286


>tr|A1THR5|A1THR5_MYCVP Putative uncharacterized protein
           OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1)
           GN=Mvan_5957 PE=4 SV=1
          Length = 572

 Score = 33.5 bits (75), Expect = 5.3
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +3

Query: 135 HSPPRPSICLPFSSQSADIHYNKHLMID 218
           H P R S CL  S++SA +H  +HL+ID
Sbjct: 249 HKPYRDSFCLAASNESARLHIFRHLLID 276


>tr|Q5N2N9|Q5N2N9_SYNP6 Porphyrin biosynthesis protein HemD
           OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 /
           SAUG 1402/1) GN=hemD PE=4 SV=1
          Length = 264

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
 Frame = -2

Query: 444 WTPLQSVDGAIASFDIAVKMPNDALEAVQ-----VNKHWTLSNVREHLVIMGFEALQQAQ 280
           W PL     AIA FD  +    +A+EAVQ       K W  S+V   + ++G +  Q   
Sbjct: 48  WLPLDEAIAAIADFDWLILASANAVEAVQQRLAAQQKSW--SDVPCAIAVVGQKTAQ--V 103

Query: 279 FRLQGHKVRILPPHF 235
              QG K   +PP F
Sbjct: 104 LAAQGGKADYIPPEF 118


>tr|A0DHU5|A0DHU5_PARTE Chromosome undetermined scaffold_50, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00016999001 PE=4 SV=1
          Length = 503

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 6/94 (6%)
 Frame = -2

Query: 366 AVQVNKHWTLSNVREHLVIMGFEALQQAQFRLQGHKVRIL------PPHFQYIMVCRSLD 205
           A+Q +K+W LSN+ +H  I   +    A        V +L         F  I +CR+L 
Sbjct: 360 AIQKSKNWLLSNMLKHYRIEADDLFMMAARYDNLGAVMLLINNNYPVEEFSKIAICRNLK 419

Query: 204 AYCNECPQIGKRMEDKLKVEEDCGDRWNYAIDLI 103
            Y          ++ +LK + D  + +NY + LI
Sbjct: 420 IYRVLKSYENYNIQKQLKKQMDSKNNFNYEVKLI 453