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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917019
Clone id YMU001_000094_G08
Library
Length 404
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000094_G08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GGTCCTGTTGGTCTTCTCTGGGTGGGCAGATTAATTGTAGGAGAAAGGTTTTCAGGAGCT
GTAAATCCTTACAGAGCAACAAAATCCAATTTGAGAGGCTTTTAGGAGTAAATTGGTGGC
GAGTGCGACGGGGGTGAAAAGGGGCCATGCCGCAGCCGAAGGAGACTCCATTTTACTAGT
ATTATAAAGACAGAAAGATAGATAAACATTTAGTTTTTGAAGCTGGCACACGTATTCCAA
CGTCTAGTGGTCAAGAGATAAGGTTTCACTTTAGTAGTGATTTGATCCGCGAAATTGCAA
GCCTGGCAAACTGGCGTATTTGAATTTTGGCACAAGGTGTACACAGTCATCCGTAGTTAG
CTGCCGCTTCAAACTAGTTGTCTCAATATTTGAGACGAGAGCCG
■■Homology search results ■■ -
sp_hit_id Q2LCQ0
Definition sp|Q2LCQ0|MP05_DICCI Uncharacterized mitochondrial protein Mp05 OS=Dictyostelium citrinum
Align length 56
Score (bit) 29.3
E-value 6.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917019|Adiantum capillus-veneris mRNA, clone:
YMU001_000094_G08.
         (404 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q2LCQ0|MP05_DICCI Uncharacterized mitochondrial protein Mp05 ...    29   6.3  

>sp|Q2LCQ0|MP05_DICCI Uncharacterized mitochondrial protein Mp05
           OS=Dictyostelium citrinum PE=4 SV=1
          Length = 388

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = -3

Query: 333 VPKFKYASLPGLQFRGSNHY*SETLSLDH*TLEYVCQLQKLNVYLSFCLYNTSKME 166
           VP +K        F GS+ Y  ET        EY+   ++  V L + LYN++K+E
Sbjct: 128 VPLWKVDIYGDFAFYGSDPYIKETKEYPE---EYISDEKRSEVELDYLLYNSTKLE 180
tr_hit_id B8G9F2
Definition tr|B8G9F2|B8G9F2_9CHLR Putative uncharacterized protein OS=Chloroflexus aggregans DSM 9485
Align length 32
Score (bit) 33.1
E-value 7.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917019|Adiantum capillus-veneris mRNA, clone:
YMU001_000094_G08.
         (404 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8G9F2|B8G9F2_9CHLR Putative uncharacterized protein OS=Chlor...    33   7.2  

>tr|B8G9F2|B8G9F2_9CHLR Putative uncharacterized protein
           OS=Chloroflexus aggregans DSM 9485 GN=Cagg_1540 PE=4
           SV=1
          Length = 451

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -3

Query: 213 LNVYLSFCLYNTSKMESPSAAAWPLFTPVALA 118
           L +YLSF L+  +    PSAA WPL   + +A
Sbjct: 34  LAIYLSFSLWTRTIFVGPSAATWPLLATIVVA 65