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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917022
Clone id YMU001_000094_G12
Library
Length 512
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000094_G12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CCCTCGTGCACTATGCCATCATCAGGCAACAAACGACTGACAACCCCAACTGCAAATGCT
CCCACTACAGCTGCGATATCCGGTCTCAAGATCAGCATCTCATACATGAGACCACCGAAT
GCCGATGCAATGCTAGCGGGCCCTGCTAGCTCTACGGAGCATGCATCAACATATATATCC
CTGGAAATAGGCATCTTTGACTGACAAGGCGTGTCAGCCACATGCATCTCCTGACTGTCC
ACAAAAGACGCATCAACCTGTCGTGCAACCTCATAGCACACCAGCTGCTCTAGGTGTCTG
CTGGAAGACATATCTTGCACAACTATATCCCCATGCTCACTGTCGAGCATAGAAAGGAAT
GACTGCATAATCGCTGACATCTCAGTCTCCTCTGCAATCATCCACTGCAAACATGACCAC
TCAATCTGCTGTGACTCACTAGAGCTCTCATGCTCTAACTCCGTATGCATAGACTCTTGC
ACAACGTCCTCCTGTCGTGACTCACTAGAGCA
■■Homology search results ■■ -
sp_hit_id A8MX34
Definition sp|A8MX34|KR10E_HUMAN Putative keratin-associated protein 10-like ENSP00000375148 OS=Homo sapiens
Align length 83
Score (bit) 35.0
E-value 0.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917022|Adiantum capillus-veneris mRNA, clone:
YMU001_000094_G12.
         (512 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A8MX34|KR10E_HUMAN Putative keratin-associated protein 10-lik...    35   0.20 
sp|Q9BYR2|KRA45_HUMAN Keratin-associated protein 4-5 OS=Homo sap...    32   2.2  
sp|Q9BYR4|KRA43_HUMAN Keratin-associated protein 4-3 OS=Homo sap...    31   3.8  
sp|Q5WHD5|SYGB_BACSK Glycyl-tRNA synthetase beta subunit OS=Baci...    30   5.0  
sp|Q2S1B9|GATB_SALRD Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransf...    30   5.0  
sp|Q5VY43|PEAR1_HUMAN Platelet endothelial aggregation receptor ...    30   8.5  
sp|A2AR95|LRAD3_MOUSE Low-density lipoprotein receptor class A d...    30   8.5  
sp|Q9BYQ5|KRA46_HUMAN Keratin-associated protein 4-6 OS=Homo sap...    30   8.5  

>sp|A8MX34|KR10E_HUMAN Putative keratin-associated protein 10-like
           ENSP00000375148 OS=Homo sapiens PE=3 SV=1
          Length = 341

 Score = 35.0 bits (79), Expect = 0.20
 Identities = 25/83 (30%), Positives = 32/83 (38%), Gaps = 2/83 (2%)
 Frame = +1

Query: 253 STCRATS*HTSCSRCLLEDISCTTISPCSLSSIERNDCXXXXXXXXXXXXHCKHDHSICC 432
           S C  +S   SCS        C   SPC  SS + + C                  S+CC
Sbjct: 99  SPCLVSSCQPSCSESTCCQEKCCDASPCQQSSCQESVC-------MSGSCQAACGQSVCC 151

Query: 433 D--SLELSCSNSVCIDSCTTSSC 495
           D  S + SCS    + SC  +SC
Sbjct: 152 DAGSCQPSCSE---VTSCPETSC 171


>sp|Q9BYR2|KRA45_HUMAN Keratin-associated protein 4-5 OS=Homo
           sapiens GN=KRTAP4-5 PE=2 SV=1
          Length = 186

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 23/85 (27%), Positives = 29/85 (34%)
 Frame = +1

Query: 250 ASTCRATS*HTSCSRCLLEDISCTTISPCSLSSIERNDCXXXXXXXXXXXXHCKHDHSIC 429
           +S CR     +SC R      SC   + C  +      C             C    S+C
Sbjct: 63  SSCCRPYCCESSCCRPCCCRPSCCQTTCCRTTCCRTTCCCPSCCVSSCCRPQCCQ--SVC 120

Query: 430 CDSLELSCSNSVCIDSCTTSSCRDS 504
           C      C  S CI SC   SC +S
Sbjct: 121 CQPT--CCRPSYCISSCCHPSCCES 143


>sp|Q9BYR4|KRA43_HUMAN Keratin-associated protein 4-3 OS=Homo
           sapiens GN=KRTAP4-3 PE=2 SV=2
          Length = 195

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 28/92 (30%), Positives = 30/92 (32%)
 Frame = +1

Query: 223 CIS*LSTKDASTCRATS*HTSCSRCLLEDISCTTISPCSLSSIERNDCXXXXXXXXXXXX 402
           CIS  S    S CR T    SC        SC   S C  S  +   C            
Sbjct: 85  CIS--SCCKPSCCRTTCCRPSCCISSCCRPSCCISSCCKPSCCQTTCCRPSCCISSCYRP 142

Query: 403 HCKHDHSICCDSLELSCSNSVCIDSCTTSSCR 498
            C      CC      C +S C  SC  SSCR
Sbjct: 143 QCCQPS--CCRPA--CCISSCCHPSCCVSSCR 170


>sp|Q5WHD5|SYGB_BACSK Glycyl-tRNA synthetase beta subunit
           OS=Bacillus clausii (strain KSM-K16) GN=glyS PE=3 SV=1
          Length = 693

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 20/58 (34%), Positives = 30/58 (51%)
 Frame = -1

Query: 407 QWMIAEETEMSAIMQSFLSMLDSEHGDIVVQDMSSSRHLEQLVCYEVARQVDASFVDS 234
           Q++IA+  E  A + S L  ++ EH  +V  D +    + QLV Y  A  +  SF DS
Sbjct: 209 QYVIADAEERKAAIVSQLKQMEEEHSWVVPIDEALLEEVTQLVEYPTA--LSGSFDDS 264


>sp|Q2S1B9|GATB_SALRD Aspartyl/glutamyl-tRNA(Asn/Gln)
           amidotransferase subunit B OS=Salinibacter ruber (strain
           DSM 13855) GN=gatB PE=3 SV=1
          Length = 508

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 12/24 (50%), Positives = 20/24 (83%)
 Frame = -1

Query: 320 VQDMSSSRHLEQLVCYEVARQVDA 249
           +++M+S RH+EQ + YE+ARQ+ A
Sbjct: 225 LKNMNSMRHVEQALDYEIARQIAA 248


>sp|Q5VY43|PEAR1_HUMAN Platelet endothelial aggregation receptor 1
           OS=Homo sapiens GN=PEAR1 PE=1 SV=1
          Length = 1037

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 17/45 (37%), Positives = 18/45 (40%), Gaps = 4/45 (8%)
 Frame = +2

Query: 221 HASPDCPQKTHQPVVQPHSTPAALGVCWKT----YLAQLYPHAHC 343
           H +  CPQ TH P  Q H      GVC  T      A  Y   HC
Sbjct: 390 HCNESCPQDTHGPGCQEHCLCLHGGVCQATSGLCQCAPGYTGPHC 434


>sp|A2AR95|LRAD3_MOUSE Low-density lipoprotein receptor class A
           domain-containing protein 3 OS=Mus musculus GN=Ldlrad3
           PE=2 SV=1
          Length = 345

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 18/72 (25%), Positives = 26/72 (36%)
 Frame = +1

Query: 295 CLLEDISCTTISPCSLSSIERNDCXXXXXXXXXXXXHCKHDHSICCDSLELSCSNSVCID 474
           C++    C     C   S E N C            HC++   +C D   +    + C D
Sbjct: 84  CIIGRFRCNGFEDCPDGSDEEN-CTANPLLCSTARYHCRN--GLCIDKSFICDGQNNCQD 140

Query: 475 SCTTSSCRDSLE 510
           +    SC  SLE
Sbjct: 141 NSDEESCESSLE 152


>sp|Q9BYQ5|KRA46_HUMAN Keratin-associated protein 4-6 OS=Homo
           sapiens GN=KRTAP4-6 PE=2 SV=2
          Length = 205

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 29/93 (31%), Positives = 35/93 (37%), Gaps = 11/93 (11%)
 Frame = +1

Query: 259 CRATS*HTSC--SRCL----LEDISC--TTISP-CSLSSIERNDCXXXXXXXXXXXXHCK 411
           CR T    SC  S C      + + C  T   P CS+SS  R  C             C+
Sbjct: 75  CRTTCCRPSCCVSSCCRPQCCQSVCCQPTCCRPSCSISSCCRPSCCVSRC--------CR 126

Query: 412 HD--HSICCDSLELSCSNSVCIDSCTTSSCRDS 504
                S+CC      C  S CI SC   SC +S
Sbjct: 127 SQCCQSVCCQPT--CCRPSCCISSCCRPSCCES 157
tr_hit_id Q1JTH9
Definition tr|Q1JTH9|Q1JTH9_TOXGO Hyothetical protein OS=Toxoplasma gondii RH
Align length 131
Score (bit) 38.5
E-value 0.19
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917022|Adiantum capillus-veneris mRNA, clone:
YMU001_000094_G12.
         (512 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q1JTH9|Q1JTH9_TOXGO Hyothetical protein OS=Toxoplasma gondii ...    39   0.19 
tr|Q75JE6|Q75JE6_DICDI Similar to Dictyostelium discoideum (Slim...    38   0.33 
tr|A0CAJ0|A0CAJ0_PARTE Chromosome undetermined scaffold_161, who...    34   3.7  
tr|Q54X44|Q54X44_DICDI Putative uncharacterized protein OS=Dicty...    33   6.2  
tr|B6PQ54|B6PQ54_BRAFL Low-density lipoprotein receptor-related ...    33   6.2  
tr|B6MJI3|B6MJI3_BRAFL Putative uncharacterized protein OS=Branc...    33   6.2  
tr|B4LV44|B4LV44_DROVI GJ23288 OS=Drosophila virilis GN=GJ23288 ...    33   6.2  
tr|B4KLG3|B4KLG3_DROMO GI22726 OS=Drosophila mojavensis GN=GI227...    33   6.2  
tr|A4FCH6|A4FCH6_SACEN Putative uncharacterized protein OS=Sacch...    33   8.1  
tr|Q55B96|Q55B96_DICDI Putative uncharacterized protein OS=Dicty...    33   8.1  

>tr|Q1JTH9|Q1JTH9_TOXGO Hyothetical protein OS=Toxoplasma gondii RH
           GN=TgIa.0350c PE=4 SV=1
          Length = 1821

 Score = 38.5 bits (88), Expect = 0.19
 Identities = 36/131 (27%), Positives = 50/131 (38%)
 Frame = +1

Query: 112 PPNADAMLAGPASSTEHASTYISLEIGIFD*QGVSATCIS*LSTKDASTCRATS*HTSCS 291
           PP+       P SS   +S++ S           S+ C    S    S+C ++S    CS
Sbjct: 509 PPSVSPSFCAPCSSFCSSSSFSSSSFSCS-----SSAC----SGCSFSSCSSSS----CS 555

Query: 292 RCLLEDISCTTISPCSLSSIERNDCXXXXXXXXXXXXHCKHDHSICCDSLELSCSNSVCI 471
            CL    S ++ S CS SS   + C                  S C      SCS+S C 
Sbjct: 556 GCLFSSCSSSSWSGCSFSSCSSSSC----------------SSSSCSGCSFSSCSSSSC- 598

Query: 472 DSCTTSSCRDS 504
             C++SSC  S
Sbjct: 599 SGCSSSSCSSS 609



 Score = 33.5 bits (75), Expect = 6.2
 Identities = 28/94 (29%), Positives = 35/94 (37%), Gaps = 5/94 (5%)
 Frame = +1

Query: 238 STKDASTCRATS*HTS-CSRCLLEDISCTTISPCSLSSIERNDCXXXXXXXXXXXXHCKH 414
           S+   S C  +S  +S CS C     S ++ S CS SS   + C                
Sbjct: 581 SSSSCSGCSFSSCSSSSCSGCSSSSCSSSSWSGCSFSSCSSSSCSGCSFSSCSSSSCSGC 640

Query: 415 DHSICCDSLELSCSNSVCIDS----CTTSSCRDS 504
             S C  S    CS S C  S    C+ SSC  S
Sbjct: 641 SSSSCSSSSWSGCSFSSCSSSSCSGCSFSSCSSS 674


>tr|Q75JE6|Q75JE6_DICDI Similar to Dictyostelium discoideum (Slime
           mold). Prestalk protein (Putative extracellular matrix
           protein) OS=Dictyostelium discoideum GN=DDB_0168498 PE=4
           SV=1
          Length = 347

 Score = 37.7 bits (86), Expect = 0.33
 Identities = 26/111 (23%), Positives = 44/111 (39%)
 Frame = +1

Query: 172 YISLEIGIFD*QGVSATCIS*LSTKDASTCRATS*HTSCSRCLLEDISCTTISPCSLSSI 351
           +I+L + IF+   + ++C      +D + C   +    C  C   +I C   +PC+  S 
Sbjct: 8   FIALILFIFNQLDIVSSCRCDSDCEDCNECTLDTCSRGC--CSNIEIDCADDNPCTKDSC 65

Query: 352 ERNDCXXXXXXXXXXXXHCKHDHSICCDSLELSCSNSVCIDSCTTSSCRDS 504
            +                C  D    C  L   C+  +  D+CTT SC +S
Sbjct: 66  SKETGCIHEDINCDDGDACTTDS---CSQLSGCCNLPISCDACTTDSCLNS 113


>tr|A0CAJ0|A0CAJ0_PARTE Chromosome undetermined scaffold_161, whole
            genome shotgun sequence OS=Paramecium tetraurelia
            GN=GSPATT00036587001 PE=4 SV=1
          Length = 2818

 Score = 34.3 bits (77), Expect = 3.7
 Identities = 23/91 (25%), Positives = 32/91 (35%), Gaps = 2/91 (2%)
 Frame = +1

Query: 211  VSATCIS*LSTKDASTCRATS*HTSCSRCLLEDISCTTISPCSLSSIERNDCXXXXXXXX 390
            +S  CI      + +T      H SCS CL    +C T S      +  N C        
Sbjct: 1119 ISLKCICRNGYFETNTELCQQCHYSCSTCLSSSTNCQTCSQSYFRLLNNNQCQCLQGYYD 1178

Query: 391  XXXXHCKHDHSIC--CDSLELSCSNSVCIDS 477
                 C+    +C  C S    C++  C DS
Sbjct: 1179 VGVSMCQKCSEVCKTCQSSSTKCTS--CYDS 1207


>tr|Q54X44|Q54X44_DICDI Putative uncharacterized protein
           OS=Dictyostelium discoideum GN=DDB_0205657 PE=4 SV=1
          Length = 597

 Score = 33.5 bits (75), Expect = 6.2
 Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
 Frame = +1

Query: 286 CSRCLLEDISCTTISPCSLSSIERNDCXXXXXXXXXXXXHCKHDHSICCDSLELSCSNSV 465
           C+ C L+  SC+ I+ C  S I  +DC             C H   +C D    +C+N  
Sbjct: 179 CNACTLD--SCSPITGCCHSQISCDDCNACTLDSCSPIIGCCHTQMVCDDG--NACTNDG 234

Query: 466 CIDSC----TTSSCRD 501
           C +      T  SC D
Sbjct: 235 CSEETGCCHTPISCDD 250


>tr|B6PQ54|B6PQ54_BRAFL Low-density lipoprotein receptor-related
           protein 2 OS=Branchiostoma floridae GN=LRP2.2 PE=4 SV=1
          Length = 1893

 Score = 33.5 bits (75), Expect = 6.2
 Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
 Frame = +1

Query: 256 TCRATS*HTSCSRCLLEDISCTTISPCSLSSIERNDCXXXXXXXXXXXXHCKHDHSICCD 435
           TCR+     +  RC+ ++  C  +S C+  S E + C                     C 
Sbjct: 104 TCRSDQFTCTNGRCIPQNYRCDRVSDCTDGSDEGSQCSYP-----------------TCS 146

Query: 436 SLELSCSNSVCIDS---CT-TSSCRD 501
           S +L C+NS C +S   C     CRD
Sbjct: 147 SSQLRCNNSACYNSNQRCDGNMDCRD 172


>tr|B6MJI3|B6MJI3_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_83186 PE=4 SV=1
          Length = 691

 Score = 33.5 bits (75), Expect = 6.2
 Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
 Frame = +1

Query: 256 TCRATS*HTSCSRCLLEDISCTTISPCSLSSIERNDCXXXXXXXXXXXXHCKHDHSICCD 435
           TCR+     +  RC+ ++  C  +S C+  S E + C                     C 
Sbjct: 444 TCRSDQFTCTNGRCIPQNYRCDRVSDCTDGSDEGSQCSYP-----------------TCS 486

Query: 436 SLELSCSNSVCIDS---CT-TSSCRD 501
           S +L C+NS C +S   C     CRD
Sbjct: 487 SSQLRCNNSACYNSNQRCDGNMDCRD 512


>tr|B4LV44|B4LV44_DROVI GJ23288 OS=Drosophila virilis GN=GJ23288
           PE=4 SV=1
          Length = 985

 Score = 33.5 bits (75), Expect = 6.2
 Identities = 27/97 (27%), Positives = 53/97 (54%), Gaps = 4/97 (4%)
 Frame = -1

Query: 353 SMLDSEHGDIVVQDMSS--SRHLEQLVCYEVARQVDASFVDSQEMHVADTPCQSKMPISR 180
           +M+  +HG+ +   +S   S+HLEQ V  EV  ++ ++F+   +++ A T  Q+ M + R
Sbjct: 273 NMVLHKHGNRLYHGLSDVVSKHLEQKVRQEVLERLHSNFL--PKLNEAWTDHQTSMVMIR 330

Query: 179 DI--YVDACSVELAGPASIASAFGGLMYEMLILRPDI 75
           DI  Y+D   V+  G  ++ +    L  + ++  P+I
Sbjct: 331 DILMYMDRVYVQQRGLDNVYNLGLNLFRDQVVRFPEI 367


>tr|B4KLG3|B4KLG3_DROMO GI22726 OS=Drosophila mojavensis GN=GI22726
           PE=4 SV=1
          Length = 1023

 Score = 33.5 bits (75), Expect = 6.2
 Identities = 27/97 (27%), Positives = 53/97 (54%), Gaps = 4/97 (4%)
 Frame = -1

Query: 353 SMLDSEHGDIVVQDMSS--SRHLEQLVCYEVARQVDASFVDSQEMHVADTPCQSKMPISR 180
           +M+  +HG+ +   +S   S+HLEQ V  EV  ++ ++F+   +++ A T  Q+ M + R
Sbjct: 311 NMVLHKHGNRLYHGLSDVVSKHLEQKVRQEVLERLHSNFL--PKLNEAWTDHQTSMVMIR 368

Query: 179 DI--YVDACSVELAGPASIASAFGGLMYEMLILRPDI 75
           DI  Y+D   V+  G  ++ +    L  + ++  P+I
Sbjct: 369 DILMYMDRVYVQQRGLDNVYNLGLNLFRDQVVRFPEI 405


>tr|A4FCH6|A4FCH6_SACEN Putative uncharacterized protein
           OS=Saccharopolyspora erythraea (strain NRRL 23338)
           GN=SACE_2453 PE=4 SV=1
          Length = 505

 Score = 33.1 bits (74), Expect = 8.1
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
 Frame = -1

Query: 275 YEVARQVDASFVDSQEMHVADTPCQSKMPISR----DIYVDACSV 153
           Y+V + VD  F+D   +   +T C+ ++ ++R    D+Y+D C V
Sbjct: 41  YKVKKPVDFGFLDFSTVQARETACRRELELNRRLAPDVYLDLCRV 85


>tr|Q55B96|Q55B96_DICDI Putative uncharacterized protein
           OS=Dictyostelium discoideum GN=DDB_0202793 PE=4 SV=1
          Length = 280

 Score = 33.1 bits (74), Expect = 8.1
 Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 14/98 (14%)
 Frame = +1

Query: 253 STCRATS*HTSCSRCLLE----------DISCTTISPCSLSSIERNDCXXXXXXXXXXXX 402
           S CR  S    C+ C L+          +I C   + C++ S  +               
Sbjct: 23  SACRCDSDCEDCNECTLDTCSRGCCSNVEIDCDDGNQCTVDSCSKETGCAHNDINCDDGD 82

Query: 403 HCKHDH----SICCDSLELSCSNSVCIDSCTTSSCRDS 504
            C  D     S CC +L +SC ++   D+CTT SC +S
Sbjct: 83  ACTTDSCSKLSGCC-NLPISCDDN---DACTTDSCLNS 116