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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917024
Clone id YMU001_000094_H03
Library
Length 390
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000094_H03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CTCACTCCAGCAAGAGTGAGTGAATATTATATTAAAATCACCAAAAAATGACTCCAGCTC
CATGCTCCAACCGAGCCATGGAGGACATCAGCATACCCAAACATCAACCATATCAGTCCA
CAAGTGAGCTTTTTACAAGGAAGCTCAAAACCGGTACATCAAGTGCTTAATTCTGACTGG
CCTTTAGCTTATAACAGAGAATACTACCACTCAAATGGGTGCCACCATGACATACCTTCT
CCCACAAGGGCTGCCATGCCCGGGTCAAGCAGTAGCGACGAAGATTCGGAGAGAATGTAA
GCCGTACAAGAGAGAACCAATACCGCTGATGAAGAGGTCAAAACATGCCGGACACACACC
GAAGAACCACTTGGTTGCCACCCACCGGAA
■■Homology search results ■■ -
sp_hit_id Q9ZPY2
Definition sp|Q9ZPY2|LAC6_ARATH Laccase-6 OS=Arabidopsis thaliana
Align length 86
Score (bit) 35.0
E-value 0.12
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917024|Adiantum capillus-veneris mRNA, clone:
YMU001_000094_H03.
         (390 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9ZPY2|LAC6_ARATH Laccase-6 OS=Arabidopsis thaliana GN=LAC6 P...    35   0.12 
sp|Q923B1|DBR1_MOUSE Lariat debranching enzyme OS=Mus musculus G...    29   6.4  
sp|Q8EJ86|TPMT_SHEON Thiopurine S-methyltransferase OS=Shewanell...    29   6.4  
sp|Q6FRV6|SEC16_CANGA COPII coat assembly protein SEC16 OS=Candi...    29   6.4  
sp|A4Y1A0|OXAA_PSEMY Inner membrane protein oxaA OS=Pseudomonas ...    29   6.4  

>sp|Q9ZPY2|LAC6_ARATH Laccase-6 OS=Arabidopsis thaliana GN=LAC6 PE=2
           SV=1
          Length = 569

 Score = 35.0 bits (79), Expect = 0.12
 Identities = 23/86 (26%), Positives = 35/86 (40%)
 Frame = +1

Query: 100 NINHISPQVSFLQGSSKPVHQVLNSDWPLAYNREYYHSNGCHHDIPSPTRAAMPGXXXXX 279
           NI+ I P+VS L+   K +      D+P    + Y   NG  +DI + T+AA        
Sbjct: 392 NISFIEPKVSILEAYYKQLEGYFTLDFPTTPEKAYDFVNGAPNDIANDTQAANGTRAIVF 451

Query: 280 XXXXRM*AVQERTNTADEEVKTCRTH 357
               R+  + + T T   E      H
Sbjct: 452 EYGSRIQIIFQNTGTLTTENHPIHLH 477


>sp|Q923B1|DBR1_MOUSE Lariat debranching enzyme OS=Mus musculus
           GN=Dbr1 PE=2 SV=2
          Length = 550

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +1

Query: 61  HAPTEPWRTSAYPNINHI-SPQVSFLQGSSKPVHQVLNSDWPLAYNREYYH 210
           H    P+ +S   +I H+ + +V  L+   +PVH  L+ DWP    R  YH
Sbjct: 136 HFECPPYNSSTIRSIYHVRNIEVYKLKQLKQPVHIFLSHDWP----RNIYH 182


>sp|Q8EJ86|TPMT_SHEON Thiopurine S-methyltransferase OS=Shewanella
           oneidensis GN=tpm PE=3 SV=1
          Length = 218

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
 Frame = +2

Query: 62  MLQPSHGGHQHTQTSTISVHK*AFYK-------EAQNRYIKCLILTGL*LITENTTTQMG 220
           M Q + G HQH QT  IS+++   +        E    Y +  ++       E+   Q  
Sbjct: 83  MQQSAEGEHQHYQTEQISLYQGDIFTLPQSITAEVSGFYDRAALIAW----PESMRAQYA 138

Query: 221 ATMTYLLPQG 250
             + YLLPQG
Sbjct: 139 KQLAYLLPQG 148


>sp|Q6FRV6|SEC16_CANGA COPII coat assembly protein SEC16 OS=Candida
            glabrata GN=SEC16 PE=3 SV=1
          Length = 2238

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +2

Query: 23   NIILKSPKNDSSSMLQPSHGGHQHTQTSTISVH 121
            N++L+S +N   +   P++  H H QT++ +VH
Sbjct: 995  NVLLESQQNLRQNANYPTYAEHSHEQTNSYNVH 1027


>sp|A4Y1A0|OXAA_PSEMY Inner membrane protein oxaA OS=Pseudomonas
           mendocina (strain ymp) GN=oxaA PE=3 SV=1
          Length = 581

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
 Frame = -2

Query: 185 KGQSELST*CTGFELPCKKLTCGLIWLM----FGYADVLHGSVGAWSWSHFLVILI 30
           K Q  L     G EL    +  G +W +    F   +V+HG +G W WS  ++ +I
Sbjct: 350 KLQEHLGKLSPGLELT---VDYGFLWFLAQPIFWLLEVIHGLLGNWGWSIIVLTII 402
tr_hit_id Q1Q7V3
Definition tr|Q1Q7V3|Q1Q7V3_PSYCK Protein translocase subunit yidC OS=Psychrobacter cryohalolentis (strain K5)
Align length 56
Score (bit) 33.1
E-value 7.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917024|Adiantum capillus-veneris mRNA, clone:
YMU001_000094_H03.
         (390 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q1Q7V3|Q1Q7V3_PSYCK Protein translocase subunit yidC OS=Psych...    33   7.1  
tr|A3UR40|A3UR40_VIBSP Lyase, putative OS=Vibrio splendidus 12B0...    33   9.3  
tr|Q4WP54|Q4WP54_ASPFU Putative uncharacterized protein OS=Asper...    33   9.3  
tr|B6QRE7|B6QRE7_PENMA Meiotic recombination protein Ski8/Rec14,...    33   9.3  
tr|B0Y601|B0Y601_ASPFC Putative uncharacterized protein OS=Asper...    33   9.3  
tr|A0XXV5|A0XXV5_9GAMM Putative GlpG protein OS=Alteromonadales ...    33   9.3  

>tr|Q1Q7V3|Q1Q7V3_PSYCK Protein translocase subunit yidC
           OS=Psychrobacter cryohalolentis (strain K5)
           GN=Pcryo_2473 PE=3 SV=1
          Length = 564

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
 Frame = -2

Query: 185 KGQSELST*CTGFELPCKKLTCGLIW----LMFGYADVLHGSVGAWSWSHFLVILI 30
           K QSEL     G     + +  GL+W    ++FG  D +H  +G W WS  L+ ++
Sbjct: 329 KVQSELKDVAVGLN---QTVDYGLLWPISKILFGILDGIHKVIGNWGWSIILLTIL 381


>tr|A3UR40|A3UR40_VIBSP Lyase, putative OS=Vibrio splendidus 12B01
           GN=V12B01_24254 PE=4 SV=1
          Length = 580

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 16/70 (22%)
 Frame = +1

Query: 19  SEYYIKITKK*LQLHAPTEPWRTSAYPNINHISPQVSFLQ----------------GSSK 150
           + +Y+  T+     H  T   R   YPNIN+  P+V   Q                G SK
Sbjct: 397 TSWYLDDTRTNATSHELTASLRIEDYPNINNQDPKVVLGQIHGWKINQALVKLLWEGESK 456

Query: 151 PVHQVLNSDW 180
           PV  +LNSD+
Sbjct: 457 PVRVILNSDF 466


>tr|Q4WP54|Q4WP54_ASPFU Putative uncharacterized protein
           OS=Aspergillus fumigatus GN=AFUA_4G08080 PE=4 SV=2
          Length = 642

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
 Frame = +1

Query: 61  HAPTEPWRTSAYPNINHISPQVSFLQGSSKPVHQVLNSDWPLAY-NREYYHSNGCHHDIP 237
           H+ T+P  +SA P +  +SP+   LQG+  P  Q  N+  P+AY +     + GC   IP
Sbjct: 447 HSSTKPSDSSALPCLFELSPKHQLLQGNPSPSVQKPNA--PVAYFSTSTGIAIGC--QIP 502

Query: 238 SPTRAAM 258
            P+R+ +
Sbjct: 503 PPSRSQL 509


>tr|B6QRE7|B6QRE7_PENMA Meiotic recombination protein Ski8/Rec14,
           putative OS=Penicillium marneffei ATCC 18224
           GN=PMAA_046140 PE=4 SV=1
          Length = 309

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 124 VSFLQGSSKPVHQVLNSDWPLAYNREYYHSNGCHHDIPS 240
           +S    S+  +H   ++D+PLA   E  H  GCHH + S
Sbjct: 30  ISASGASALKIHSTADTDFPLAQTIEAAHKIGCHHVVTS 68


>tr|B0Y601|B0Y601_ASPFC Putative uncharacterized protein
           OS=Aspergillus fumigatus (strain CEA10 / CBS 144.89 /
           FGSC A1163) GN=AFUB_065180 PE=4 SV=1
          Length = 642

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
 Frame = +1

Query: 61  HAPTEPWRTSAYPNINHISPQVSFLQGSSKPVHQVLNSDWPLAY-NREYYHSNGCHHDIP 237
           H+ T+P  +SA P +  +SP+   LQG+  P  Q  N+  P+AY +     + GC   IP
Sbjct: 447 HSSTKPSDSSALPCLFELSPKHQLLQGNPSPSVQKPNA--PVAYFSTSTGIAIGC--QIP 502

Query: 238 SPTRAAM 258
            P+R+ +
Sbjct: 503 PPSRSQL 509


>tr|A0XXV5|A0XXV5_9GAMM Putative GlpG protein OS=Alteromonadales
           bacterium TW-7 GN=ATW7_10828 PE=4 SV=1
          Length = 275

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
 Frame = -2

Query: 305 TAYILSESSSLLLDPGMAALVGE-----GMSWWHPFEW*YSLL*AKGQSELST*CTGFEL 141
           TA I S +  L++ P    L G      G  W H F      L  +  + +ST   GF L
Sbjct: 178 TALISSWAQYLIVGPNFGGLSGVVYGLLGYCWIHSF------LNPEKPALVSTSIIGFML 231

Query: 140 PCKKLTCGLIWLMFGYADVLHGSVGAWSWSH 48
                    +WL+ G+ADVL   VG  +W+H
Sbjct: 232 ---------VWLVLGFADVLF--VGMANWAH 251