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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917031
Clone id YMU001_000095_A08
Library
Length 501
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000095_A08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GCCAGAGATGAGCCCTTGGAGGTTCCTGAAGATGTAGAAGATCTACAACACCTAGAGGAA
TAACTAGAGACACAAGATGAAGAAGAGCAACTGTTAACTATAGAGGAGGAGACACACCTC
CAAACTCTGATTGAAAAATCCACAGCTGAAGACCACAAGGCAGCGTTTGGAGTGAGAGAC
ATGAATGTTAAAATTAGTAGGAGTCCAAGGGCTTGCCACAATGTGCTTAGGGAGGAACGG
ATGCAACCTTCACTCCCATACTCTCTCCTAAAGTATGAAGTGTTGGTGATCAAGAAAAGA
GTCAAAGCGAAAGCAACAGAGCCAATCTATGAGGGAAATGTCAAAGATTCAAATACTGCA
AAGAATAAAGTGGACTCCCAACCAAAGTGGAGAAAATCGTGGCTCCTCAAGTGCCCCGGA
TTTCTAAAGTACTTGGTGGGAGCCCCCAAAAACATCAGAGATGATACTCTATTTTGCCTA
GTCCCTCGTCCAGCACATGAG
■■Homology search results ■■ -
sp_hit_id Q9HDS6
Definition sp|Q9HDS6|MTAL3_KLULA Mating-type protein ALPHA3 OS=Kluyveromyces lactis
Align length 63
Score (bit) 32.3
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917031|Adiantum capillus-veneris mRNA, clone:
YMU001_000095_A08.
         (501 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9HDS6|MTAL3_KLULA Mating-type protein ALPHA3 OS=Kluyveromyce...    32   1.3  
sp|Q8D2X6|IF2_WIGBR Translation initiation factor IF-2 OS=Wiggle...    32   2.2  
sp|Q54KD1|LMBD1_DICDI Probable lysosomal cobalamin transporter O...    31   2.8  
sp|Q09966|YS97_CAEEL Putative G-protein coupled receptor B0244.7...    31   3.7  
sp|Q5QSA4|NU2M_METNU NADH-ubiquinone oxidoreductase chain 2 OS=M...    31   3.7  
sp|Q64700|RBL2_MOUSE Retinoblastoma-like protein 2 OS=Mus muscul...    31   3.7  
sp|O94523|ACO1_SCHPO Probable acyl-CoA desaturase OS=Schizosacch...    31   3.7  
sp|A3DKS1|SYL_STAMF Leucyl-tRNA synthetase OS=Staphylothermus ma...    30   4.9  
sp|Q58650|Y1253_METJA Uncharacterized membrane protein MJ1253 OS...    30   8.2  

>sp|Q9HDS6|MTAL3_KLULA Mating-type protein ALPHA3 OS=Kluyveromyces
           lactis GN=HMLALPHA3 PE=2 SV=1
          Length = 897

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +1

Query: 250 SLPYSLLKYEVLVIKKRVK-AKATEPIYEGNVKDSNTAKNKVDSQPKWRKSWLLKCPGFL 426
           +L Y LL  EV  IK+ ++  K  E  Y+ N    N  K+     P WRK W+++    L
Sbjct: 620 TLIYILLNKEVAKIKESIRITKKFEKEYDSNCLVQNHRKHL----PTWRKQWIIEWKNIL 675

Query: 427 KYL 435
           + L
Sbjct: 676 QEL 678


>sp|Q8D2X6|IF2_WIGBR Translation initiation factor IF-2
           OS=Wigglesworthia glossinidia brevipalpis GN=infB PE=3
           SV=1
          Length = 841

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 19/51 (37%), Positives = 26/51 (50%)
 Frame = +1

Query: 244 QPSLPYSLLKYEVLVIKKRVKAKATEPIYEGNVKDSNTAKNKVDSQPKWRK 396
           +P L  S LK    +IKK VK      IY+ N    N  KNK++ + K +K
Sbjct: 148 EPILDKSKLKISKNLIKKNVKINKNLNIYKKNEFKQNLKKNKLNKKEKNKK 198


>sp|Q54KD1|LMBD1_DICDI Probable lysosomal cobalamin transporter
           OS=Dictyostelium discoideum GN=lmbrd1 PE=3 SV=1
          Length = 510

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = -2

Query: 338 FPS*IGSVAFALTLFLITNTSYFRREYGSEGCIRSSLSTLWQALGLLLILTFMSLTP 168
           FP  +G +AFA  L  +   +YF  +Y S+      ++T+   +GL L L  + L P
Sbjct: 2   FPISVGWIAFAGVLLTLIALNYFIVKYYSDKHESGKITTIISVIGLTLTLLCVMLIP 58


>sp|Q09966|YS97_CAEEL Putative G-protein coupled receptor B0244.7
           OS=Caenorhabditis elegans GN=B0244.7 PE=3 SV=2
          Length = 319

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = -2

Query: 389 HFGWESTLFFAVFESLTFPS*IGS-VAFALTLFL-ITNTSYFRREYGSEGCI 240
           HF +     F +FE L+F S IG  V   LT+++ + +  Y++RE     C+
Sbjct: 115 HFNFWVIALFIIFEMLSFLSFIGGMVGTTLTIYIAVVHPMYYQRELSLRKCV 166


>sp|Q5QSA4|NU2M_METNU NADH-ubiquinone oxidoreductase chain 2
           OS=Metachirus nudicaudatus GN=MT-ND2 PE=3 SV=1
          Length = 347

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
 Frame = -2

Query: 389 HFGWESTLFFAVFESLTFPS*IGSVAFALTLFLITNTSYFRREYGSEGCIRSSLSTLWQA 210
           H GW  T+   ++ SLT  + I  +A  +T+F++ N S   +         +SLS LW  
Sbjct: 186 HMGW-MTIIIMIYPSLTILNLILYLASTITMFMVLNQSSSTK--------INSLSILWNK 236

Query: 209 LG---LLLILTFMSL 174
                +++ LT +SL
Sbjct: 237 SAPNMIIITLTLLSL 251


>sp|Q64700|RBL2_MOUSE Retinoblastoma-like protein 2 OS=Mus musculus
            GN=Rbl2 PE=1 SV=2
          Length = 1135

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 17/76 (22%), Positives = 35/76 (46%)
 Frame = +1

Query: 190  KISRSPRACHNVLREERMQPSLPYSLLKYEVLVIKKRVKAKATEPIYEGNVKDSNTAKNK 369
            K+++  R+  N++R  R QP     + +  ++  K+R    +    ++ +  + NT +  
Sbjct: 897  KVTKEDRSFQNIMRCYRTQPQARSQVYRSVLIKGKRRNSGSSESRSHQNSPTELNTDRAS 956

Query: 370  VDSQPKWRKSWLLKCP 417
             DS P  R +  L  P
Sbjct: 957  RDSSPVMRSNSTLPVP 972


>sp|O94523|ACO1_SCHPO Probable acyl-CoA desaturase
           OS=Schizosaccharomyces pombe GN=SPCC1281.06c PE=2 SV=1
          Length = 479

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
 Frame = -1

Query: 267 ERVWE*RLHPFLPKHIVASPWTPTNFNIHVSHSKRCLVVFSC------GFFNQSLEVCLL 106
           ER W+    P  PKHI   PWT  N+  H++    C+++F        G F   L+   L
Sbjct: 37  ERKWD----PKAPKHIQEQPWTMQNWWRHLNW-LHCMLIFGLPMIAIYGVFTTPLQTKTL 91

Query: 105 LYS 97
           +++
Sbjct: 92  IFA 94


>sp|A3DKS1|SYL_STAMF Leucyl-tRNA synthetase OS=Staphylothermus
           marinus (strain ATCC 43588 / DSM 3639 / F1) GN=leuS PE=3
           SV=1
          Length = 969

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = -1

Query: 267 ERVWE*RLHPFLPKHIVASPWTPTNFNIHVSHSK 166
           ++++E R+ P  PK+ +  P+  TN  +H+ H +
Sbjct: 24  KKIFEPRIEPDKPKYFITVPYPYTNAPLHIGHGR 57


>sp|Q58650|Y1253_METJA Uncharacterized membrane protein MJ1253
           OS=Methanocaldococcus jannaschii GN=MJ1253 PE=3 SV=1
          Length = 282

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 27/95 (28%), Positives = 40/95 (42%)
 Frame = -2

Query: 413 HLRSHDFLHFGWESTLFFAVFESLTFPS*IGSVAFALTLFLITNTSYFRREYGSEGCIRS 234
           H+ S D L++  E T+  A   S  F     +V FA     I    YFR    S   I S
Sbjct: 95  HVDSLDKLNYS-EKTIG-ATLSSKFFEEGFKAVGFAFMFMAIVVYLYFRNPVPSGAIILS 152

Query: 233 SLSTLWQALGLLLILTFMSLTPNAALWSSAVDFSI 129
           +LS +  ALG + +L     +   A     + +S+
Sbjct: 153 ALSDIIMALGAMSLLGIELSSATIAALLMVIGYSV 187
tr_hit_id Q4PB62
Definition tr|Q4PB62|Q4PB62_USTMA Putative uncharacterized protein OS=Ustilago maydis
Align length 121
Score (bit) 37.7
E-value 0.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917031|Adiantum capillus-veneris mRNA, clone:
YMU001_000095_A08.
         (501 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q4PB62|Q4PB62_USTMA Putative uncharacterized protein OS=Ustil...    38   0.30 
tr|Q4JWT7|Q4JWT7_CORJK Putative iron ABC transport system, solut...    36   0.90 
tr|A8BTK5|A8BTK5_GIALA DinF protein OS=Giardia lamblia ATCC 5080...    36   1.1  
tr|A8N574|A8N574_COPC7 Predicted protein OS=Coprinopsis cinerea ...    35   2.6  
tr|A3UYN7|A3UYN7_VIBSP Phosphate ABC transporter, permease prote...    34   4.4  
tr|B7VJQ5|B7VJQ5_VIBSP ABC transporter: transmembrane protein OS...    33   5.7  
tr|A3XVT4|A3XVT4_9VIBR Phosphate ABC transporter, permease prote...    33   5.7  
tr|A5L7P7|A5L7P7_9GAMM Phosphate ABC transporter, permease prote...    33   7.4  
tr|A5ACY2|A5ACY2_VITVI Putative uncharacterized protein OS=Vitis...    33   7.4  
tr|A8X809|A8X809_CAEBR Putative uncharacterized protein OS=Caeno...    33   9.7  

>tr|Q4PB62|Q4PB62_USTMA Putative uncharacterized protein OS=Ustilago
           maydis GN=UM02651.1 PE=4 SV=1
          Length = 484

 Score = 37.7 bits (86), Expect = 0.30
 Identities = 32/121 (26%), Positives = 48/121 (39%), Gaps = 3/121 (2%)
 Frame = -2

Query: 494 AGRGTRQNRVSSLMF---LGAPTKYFRNPGHLRSHDFLHFGWESTLFFAVFESLTFPS*I 324
           A RG R NR+ +++    +G P      P HL  H +L      T     FES+   + +
Sbjct: 254 AFRGLRANRLWAILVNAAIGVPYAMAFKPYHLEHHKYLGEDGTDTDLPTKFESVVLRNVL 313

Query: 323 GSVAFALTLFLITNTSYFRREYGSEGCIRSSLSTLWQALGLLLILTFMSLTPNAALWSSA 144
           G   FA          Y  R     G +R+   T+W  L +  IL F +L      W+  
Sbjct: 314 GKAFFATFQIFF----YALR----PGFVRAQRPTIWHLLNITFILLFNTLLVRTFGWTPL 365

Query: 143 V 141
           +
Sbjct: 366 I 366


>tr|Q4JWT7|Q4JWT7_CORJK Putative iron ABC transport system,
           solute-binding protein OS=Corynebacterium jeikeium
           (strain K411) GN=irp6A PE=3 SV=1
          Length = 394

 Score = 36.2 bits (82), Expect = 0.90
 Identities = 27/72 (37%), Positives = 33/72 (45%), Gaps = 10/72 (13%)
 Frame = +1

Query: 286 VIKKRVKAKATEPIYEGNVKDSNTAKNKVDSQPK---WRKSWLLKCPGFLKY-----LVG 441
           ++ K  KAK     Y G VKD     NK   +PK   WR + +  C G +K      LV 
Sbjct: 188 LLGKEDKAKEFNDFYSGKVKDVTDRANKAKDKPKTLVWRAAGMKDCCGTVKNSNLGDLVN 247

Query: 442 AP--KNIRDDTL 471
           A   KNI DD L
Sbjct: 248 AAGGKNIGDDLL 259


>tr|A8BTK5|A8BTK5_GIALA DinF protein OS=Giardia lamblia ATCC 50803
           GN=GL50803_16841 PE=4 SV=1
          Length = 571

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 23/69 (33%), Positives = 35/69 (50%)
 Frame = -2

Query: 374 STLFFAVFESLTFPS*IGSVAFALTLFLITNTSYFRREYGSEGCIRSSLSTLWQALGLLL 195
           S L F +F  +     I S +FA + +    T YF R Y   G +   L+ L  ++GLLL
Sbjct: 331 SLLVFYLFRHIFM---ISSRSFATSYYTSMQTYYFHRFYQCAGTVLVRLTILVYSIGLLL 387

Query: 194 ILTFMSLTP 168
              F++L+P
Sbjct: 388 GFIFLALSP 396


>tr|A8N574|A8N574_COPC7 Predicted protein OS=Coprinopsis cinerea
            (strain Okayama-7 / 130 / FGSC 9003) GN=CC1G_04456 PE=4
            SV=1
          Length = 1394

 Score = 34.7 bits (78), Expect = 2.6
 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
 Frame = -2

Query: 473  NRVSSLMFLGAPTK---YFRNPGHLRSHDFLHFGWESTLFFAVFESLTFPS*IGSVAFAL 303
            N +S+ M +GAP        NP H  SH F+ F W++ + F   E   F S +   +   
Sbjct: 1152 NSLSAKMEIGAPMAALYLLGNPDHYSSHSFVSFYWKNYVNFVFAEWAKFESNMEGDSPDA 1211

Query: 302  TLFLITNTSYFRREYGSE 249
            T  L  N    R EY S+
Sbjct: 1212 TRTLRENLDGNRSEYDSD 1229


>tr|A3UYN7|A3UYN7_VIBSP Phosphate ABC transporter, permease protein
           OS=Vibrio splendidus 12B01 GN=V12B01_08964 PE=3 SV=1
          Length = 569

 Score = 33.9 bits (76), Expect = 4.4
 Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 8/55 (14%)
 Frame = -3

Query: 154 GLQLWIFQSEF-------GGVSPPL*LTVALLHLVSLVI-PLGVVDLLHLQEPPR 14
           G Q+W F SE        GGV P +  TV L+ L+S+V+ PLGVV  ++L E  R
Sbjct: 296 GKQVWKFLSENPRDSNSEGGVFPAIFGTVLLVILMSIVVMPLGVVAAIYLHEYAR 350


>tr|B7VJQ5|B7VJQ5_VIBSP ABC transporter: transmembrane protein
           OS=Vibrio splendidus LGP32 GN=VS_0586 PE=4 SV=1
          Length = 569

 Score = 33.5 bits (75), Expect = 5.7
 Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 8/52 (15%)
 Frame = -3

Query: 154 GLQLWIFQSEF-------GGVSPPL*LTVALLHLVSLVI-PLGVVDLLHLQE 23
           G Q+W F SE        GGV P +  TV L+ L+S+V+ PLGVV  ++L E
Sbjct: 296 GKQVWKFLSENPRDSNSEGGVFPAIFGTVLLVILMSIVVMPLGVVAAIYLHE 347


>tr|A3XVT4|A3XVT4_9VIBR Phosphate ABC transporter, permease protein
           OS=Vibrio sp. MED222 GN=MED222_01382 PE=3 SV=1
          Length = 569

 Score = 33.5 bits (75), Expect = 5.7
 Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 8/52 (15%)
 Frame = -3

Query: 154 GLQLWIFQSEF-------GGVSPPL*LTVALLHLVSLVI-PLGVVDLLHLQE 23
           G Q+W F SE        GGV P +  TV L+ L+S+V+ PLGVV  ++L E
Sbjct: 296 GKQVWKFLSENPRDSNSEGGVFPAIFGTVLLVILMSIVVMPLGVVAAIYLHE 347


>tr|A5L7P7|A5L7P7_9GAMM Phosphate ABC transporter, permease protein
           (Fragment) OS=Vibrionales bacterium SWAT-3
           GN=VSWAT3_08778 PE=3 SV=1
          Length = 319

 Score = 33.1 bits (74), Expect = 7.4
 Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 8/52 (15%)
 Frame = -3

Query: 154 GLQLWIFQSEF-------GGVSPPL*LTVALLHLVSLVI-PLGVVDLLHLQE 23
           G Q+W F SE        GGV P +  TV L+ L+S+V+ PLGVV  ++L E
Sbjct: 46  GHQVWKFLSENPRESNSEGGVFPAIFGTVLLVILMSIVVMPLGVVAAIYLHE 97


>tr|A5ACY2|A5ACY2_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_004605 PE=4 SV=1
          Length = 230

 Score = 33.1 bits (74), Expect = 7.4
 Identities = 20/59 (33%), Positives = 31/59 (52%)
 Frame = -3

Query: 178 LSLQTLPCGLQLWIFQSEFGGVSPPL*LTVALLHLVSLVIPLGVVDLLHLQEPPRAHLW 2
           L L+ LP   +LW+F S  G  +PP  L++  LHL  L   + ++++L    P    LW
Sbjct: 143 LLLEILPSMARLWVFLSFNGATAPPTILSMVRLHLPMLRNGVLLLEIL----PSMERLW 197


>tr|A8X809|A8X809_CAEBR Putative uncharacterized protein
           OS=Caenorhabditis briggsae GN=CBG09009 PE=4 SV=1
          Length = 508

 Score = 32.7 bits (73), Expect = 9.7
 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
 Frame = -2

Query: 389 HFGWESTLFFAVFESLTFPS*IGSVA-FALTLFL-ITNTSYFRREYGSEGCI 240
           HF +    FF +FE L+F S +G +A   LT+++ + +  Y++RE     C+
Sbjct: 115 HFNFWVIAFFIIFEMLSFLSFLGGIAGTTLTIYVAVVHPVYYQREMSLRKCV 166