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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917039
Clone id YMU001_000095_B10
Library
Length 304
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000095_B10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTTGAATTCCAACAATCATGATTGAAAGAGGGATCTCCAGTATACAACTGGTATCATATT
TGACATACCATCCAAGTATGCACAAAATCGTCCACATCCTTCTTAAGCTGTGGCCACTAT
AATTATCTGGCATCAATTGCAATTTTTAAGTGAACCCAACAGAAGGGGGTGCATATAGTG
ATCAAAAACATTTTCACTGCCAACCTAAATGCACCCAACAAACAGCGTATAAAATGATTC
ATAAAAGAATATTGCCAAGGCAGGGTGGTGTAAATACTCTATTTGCTCTCTTTACACTTA
CTCT
■■Homology search results ■■ -
sp_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917039|Adiantum capillus-veneris mRNA, clone:
YMU001_000095_B10.
         (304 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done

 ***** No hits found ******
tr_hit_id Q1G972
Definition tr|Q1G972|Q1G972_LACDA Putative polysaccharide transport protein OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20081)
Align length 49
Score (bit) 35.0
E-value 1.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917039|Adiantum capillus-veneris mRNA, clone:
YMU001_000095_B10.
         (304 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q1G972|Q1G972_LACDA Putative polysaccharide transport protein...    35   1.8  
tr|Q049B8|Q049B8_LACDB Polysaccharide transport membrane protein...    35   1.8  

>tr|Q1G972|Q1G972_LACDA Putative polysaccharide transport protein
           OS=Lactobacillus delbrueckii subsp. bulgaricus (strain
           ATCC 11842 / DSM 20081) GN=Ldb1569 PE=4 SV=1
          Length = 539

 Score = 35.0 bits (79), Expect = 1.8
 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
 Frame = +3

Query: 6   IPTIMIERGISSIQLVSYLTYHPSMHKIVHI---LLKLWPL*LSGINCN 143
           IP I+I+ GI+  QLV   T+HP +   +H+    +++W   L G+N N
Sbjct: 251 IPFIIIDSGINIFQLVDQYTFHPMIASFMHVPYDAIEIWYA-LFGLNAN 298


>tr|Q049B8|Q049B8_LACDB Polysaccharide transport membrane protein
           OS=Lactobacillus delbrueckii subsp. bulgaricus (strain
           ATCC BAA-365) GN=LBUL_1450 PE=4 SV=1
          Length = 539

 Score = 35.0 bits (79), Expect = 1.8
 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
 Frame = +3

Query: 6   IPTIMIERGISSIQLVSYLTYHPSMHKIVHI---LLKLWPL*LSGINCN 143
           IP I+I+ GI+  QLV   T+HP +   +H+    +++W   L G+N N
Sbjct: 251 IPFIIIDSGINIFQLVDQYTFHPMIASFMHVPYDAIEIWYA-LFGLNAN 298