BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917041|Adiantum capillus-veneris mRNA, clone:
YMU001_000095_B12.
         (385 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O33405|MBHS_OLICO Uptake hydrogenase small subunit OS=Oligotr...    34   0.26 
sp|Q9NZR2|LRP1B_HUMAN Low-density lipoprotein receptor-related p...    32   1.3  
sp|Q488N6|GLYA1_COLP3 Serine hydroxymethyltransferase 1 OS=Colwe...    32   1.3  
sp|Q9JI18|LRP1B_MOUSE Low-density lipoprotein receptor-related p...    30   4.9  
sp|P18190|MBHS_AZOCH Uptake hydrogenase small subunit OS=Azotoba...    29   8.4  
sp|Q58FL6|LYS4_ASPNC Homoaconitase, mitochondrial OS=Aspergillus...    29   8.4  

>sp|O33405|MBHS_OLICO Uptake hydrogenase small subunit
           OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM
           1227 / OM5) GN=hoxS PE=1 SV=2
          Length = 360

 Score = 33.9 bits (76), Expect = 0.26
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +2

Query: 104 NALGIFCCLGA*PFLKALAYAHKHDTSIFMFVSCS 208
           N  G+FC +G  PF+  L YA KH  +I  + SC+
Sbjct: 127 NEDGMFCIIGGKPFVDQLRYAAKHAKAIISWGSCA 161


>sp|Q9NZR2|LRP1B_HUMAN Low-density lipoprotein receptor-related
            protein 1B OS=Homo sapiens GN=LRP1B PE=1 SV=2
          Length = 4599

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
 Frame = -1

Query: 256  WLCDIIDDCRHSYPSQRARDKHEDRCIMFMCIS----QCL*ERLCTQTAE 119
            W+CD  DDC  +       D+  D C+ F+C S    +C   R+C Q+ +
Sbjct: 3691 WVCDGEDDCGDN------SDEAPDMCVKFLCPSTRPHRCRNNRICLQSEQ 3734


>sp|Q488N6|GLYA1_COLP3 Serine hydroxymethyltransferase 1
           OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681)
           GN=glyA1 PE=3 SV=1
          Length = 419

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -1

Query: 256 WLCDIIDDCRHSYPSQRARDKHEDRCIMF 170
           W+CDI+DD  +   S+R +D+ ++ C  F
Sbjct: 386 WICDILDDIENEDVSKRVQDQVKELCARF 414


>sp|Q9JI18|LRP1B_MOUSE Low-density lipoprotein receptor-related
            protein 1B OS=Mus musculus GN=Lrp1b PE=2 SV=1
          Length = 4599

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
 Frame = -1

Query: 256  WLCDIIDDCRHSYPSQRARDKHEDRCIMFMCIS----QCL*ERLCTQ 128
            W+CD  DDC  +       D+  D C+ F+C      +C  +R+C Q
Sbjct: 3691 WVCDGEDDCGDN------SDEAPDMCVKFLCPPTRPYRCRNDRICLQ 3731


>sp|P18190|MBHS_AZOCH Uptake hydrogenase small subunit
           OS=Azotobacter chroococcum mcd 1 GN=hupA PE=3 SV=3
          Length = 354

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 104 NALGIFCCLGA*PFLKALAYAHKHDTSIFMFVSCS 208
           N  G+FC +G  PFL  L +A K   ++  + SC+
Sbjct: 123 NEDGMFCIVGGKPFLDQLKHAAKDAKAVIAWGSCA 157


>sp|Q58FL6|LYS4_ASPNC Homoaconitase, mitochondrial OS=Aspergillus
           niger (strain CBS 513.88 / FGSC A1513) GN=lysA PE=3 SV=1
          Length = 769

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
 Frame = +1

Query: 202 LLSEMDNCVYN--RQLCHITSIADEPGLSKKYPGFPQRL 312
           LL ++D+ V +  ++      + +E GL++ YPGFP+R+
Sbjct: 552 LLGQLDDLVADGEKRFAPEEKVEEEGGLTEVYPGFPERV 590

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917041|Adiantum capillus-veneris mRNA, clone:
YMU001_000095_B12.
         (385 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B5DQN1|B5DQN1_DROPS GA23699 OS=Drosophila pseudoobscura pseud...    34   3.2  

>tr|B5DQN1|B5DQN1_DROPS GA23699 OS=Drosophila pseudoobscura
           pseudoobscura GN=GA23699 PE=4 SV=1
          Length = 251

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 25/86 (29%), Positives = 41/86 (47%)
 Frame = +2

Query: 80  IWLVGDHQNALGIFCCLGA*PFLKALAYAHKHDTSIFMFVSCSLRWITVSTIVNYVT*PA 259
           +WLV DH  AL +   +G   FL  L    +   S+     C L W+T   IV ++  P 
Sbjct: 53  VWLVRDHSAALILAFAVGV--FLFLLFSLSRQMRSL-----CFLNWLTTLVIVEFLVQPM 105

Query: 260 *LMNLVFQKNTLVFLKGYKMFSVIIL 337
            L  L+   + L  L G+ + S++++
Sbjct: 106 AL--LIVPTDLLYLLAGFLIVSLVVV 129