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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917057
Clone id YMU001_000095_D04
Library
Length 329
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000095_D04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TACATCCTTACAAAATACAGAAGTTATCTCTGATCAGGAAGTGTATGAATCTGTGACAGA
GAGGAGAAGTTTCTCTTGTTTAGACCCAGATGATTGCAAGGTAACCTCAGGAATCACCTT
TGCTCCCAAGTCTTCAAAGCCTTGTGGATTGTTTTGGAATTAAGAGCTGCATCGACAAGA
CACTCATGGACTTGTCTGAAAGAGTCGCAGAATTGTGCTGCATCCTTAGGACTTAACTTC
TTGTGAACCGCTTCTCGAAGACGAGGCCAAAAGACATCGCCATTGCCGAGATTCCCATCT
AGTGTCAATGAGTCGTGTAGCTGATCGAT
■■Homology search results ■■ -
sp_hit_id Q8K0D2
Definition sp|Q8K0D2|HABP2_MOUSE Hyaluronan-binding protein 2 OS=Mus musculus
Align length 46
Score (bit) 32.0
E-value 1.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917057|Adiantum capillus-veneris mRNA, clone:
YMU001_000095_D04.
         (329 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8K0D2|HABP2_MOUSE Hyaluronan-binding protein 2 OS=Mus muscul...    32   1.00 
sp|O32231|RNR_BACSU Ribonuclease R OS=Bacillus subtilis GN=rnr P...    32   1.3  
sp|Q9K0Y9|MURE_NEIMB UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--...    30   5.0  
sp|Q9JSZ0|MURE_NEIMA UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--...    30   5.0  
sp|Q6L711|HABP2_RAT Hyaluronan-binding protein 2 OS=Rattus norve...    29   8.4  

>sp|Q8K0D2|HABP2_MOUSE Hyaluronan-binding protein 2 OS=Mus musculus
           GN=Habp2 PE=1 SV=2
          Length = 558

 Score = 32.0 bits (71), Expect = 1.00
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
 Frame = +2

Query: 71  FSCLDPDDCKVTSGITFAPKSSK-----PCGLFWN*ELHRQDTHGL 193
           F  + PDDC V  G ++  K SK     PC L+WN  L  Q+T+ +
Sbjct: 184 FCEIGPDDCYVGDGYSYRGKVSKTVNQNPC-LYWNSHLLLQETYNM 228


>sp|O32231|RNR_BACSU Ribonuclease R OS=Bacillus subtilis GN=rnr PE=3
           SV=1
          Length = 779

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 17/35 (48%), Positives = 22/35 (62%)
 Frame = +2

Query: 35  QEVYESVTERRSFSCLDPDDCKVTSGITFAPKSSK 139
           Q V  + TE R+F  + PDD K+TS I F PK+ K
Sbjct: 138 QRVVGTYTETRNFGFVIPDDKKITSDI-FIPKNGK 171


>sp|Q9K0Y9|MURE_NEIMB
           UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase OS=Neisseria meningitidis
           serogroup B GN=murE PE=3 SV=1
          Length = 492

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = -1

Query: 326 DQLHDSLTLDGNLGNGDVFWPRLREAVHKKLSPKDAAQFCDSFRQ 192
           D L +   + G +GNG  FW  L E  H   +P D       FRQ
Sbjct: 130 DLLGEKTAIVGTVGNG--FWGALEETTHTTPAPVDVQTLLYRFRQ 172


>sp|Q9JSZ0|MURE_NEIMA
           UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase OS=Neisseria meningitidis
           serogroup A GN=murE PE=3 SV=1
          Length = 492

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = -1

Query: 326 DQLHDSLTLDGNLGNGDVFWPRLREAVHKKLSPKDAAQFCDSFRQ 192
           D L +   + G +GNG  FW  L E  H   +P D       FRQ
Sbjct: 130 DLLGEKTAIVGTVGNG--FWGALEETTHTTPAPVDVQTLLYRFRQ 172


>sp|Q6L711|HABP2_RAT Hyaluronan-binding protein 2 OS=Rattus
           norvegicus GN=Habp2 PE=2 SV=1
          Length = 558

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
 Frame = +2

Query: 71  FSCLDPDDCKVTSGITFAPKSSK-----PCGLFWN*ELHRQDTHGL 193
           F  + PDDC V  G ++  K S+     PC L+WN  L  Q+ + +
Sbjct: 184 FCEIGPDDCYVGDGYSYRGKVSRTVNQNPC-LYWNSHLLLQENYNM 228
tr_hit_id Q0ZHF0
Definition tr|Q0ZHF0|Q0ZHF0_SOLCH Putative uncharacterized protein OS=Solanum chacoense
Align length 54
Score (bit) 52.4
E-value 1.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917057|Adiantum capillus-veneris mRNA, clone:
YMU001_000095_D04.
         (329 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q0ZHF0|Q0ZHF0_SOLCH Putative uncharacterized protein OS=Solan...    52   1e-05
tr|A9TNP5|A9TNP5_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.020
tr|A9P238|A9P238_PICSI Putative uncharacterized protein OS=Picea...    42   0.020
tr|B6U6D8|B6U6D8_MAIZE Putative uncharacterized protein OS=Zea m...    41   0.026
tr|B6TR62|B6TR62_MAIZE Putative uncharacterized protein OS=Zea m...    39   0.098
tr|B6SN90|B6SN90_MAIZE Putative uncharacterized protein OS=Zea m...    39   0.098
tr|B6TLG0|B6TLG0_MAIZE Putative uncharacterized protein OS=Zea m...    37   0.37 
tr|B6SGK5|B6SGK5_MAIZE Putative uncharacterized protein OS=Zea m...    37   0.37 
tr|A7PFW0|A7PFW0_VITVI Chromosome chr6 scaffold_15, whole genome...    37   0.37 
tr|Q6NQD2|Q6NQD2_ARATH At5g12240 (MRNA, , clone: RAFL22-05-F16) ...    36   1.1  
tr|B4FGW9|B4FGW9_MAIZE Putative uncharacterized protein OS=Zea m...    35   1.4  
tr|Q9FMN9|Q9FMN9_ARATH Genomic DNA, chromosome 5, P1 clone:MXC9 ...    34   3.1  
tr|Q7WE70|Q7WE70_BORBR Putative racemase OS=Bordetella bronchise...    33   9.1  

>tr|Q0ZHF0|Q0ZHF0_SOLCH Putative uncharacterized protein OS=Solanum
           chacoense PE=4 SV=1
          Length = 114

 Score = 52.4 bits (124), Expect = 1e-05
 Identities = 22/54 (40%), Positives = 35/54 (64%)
 Frame = -1

Query: 290 LGNGDVFWPRLREAVHKKLSPKDAAQFCDSFRQVHECLVDAALNSKTIHKALKT 129
           LG+G+ FW +L+ A  KK++P +A +FC +FRQV+  LVD  L+ +     L +
Sbjct: 61  LGHGEAFWGKLKAAAEKKMNPAEAEEFCKTFRQVYRKLVDEELSLEAARSLLSS 114


>tr|A9TNP5|A9TNP5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_171085 PE=4 SV=1
          Length = 162

 Score = 41.6 bits (96), Expect = 0.020
 Identities = 18/49 (36%), Positives = 29/49 (59%)
 Frame = -1

Query: 272 FWPRLREAVHKKLSPKDAAQFCDSFRQVHECLVDAALNSKTIHKALKTW 126
           FW +L+ A  ++L P+ A +FCD+FR  H  +V+  L+   I +  K W
Sbjct: 110 FWDQLKAAAEQQLLPEAAQKFCDAFRARHNEMVNNTLSLDGIERIAKHW 158


>tr|A9P238|A9P238_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 121

 Score = 41.6 bits (96), Expect = 0.020
 Identities = 20/46 (43%), Positives = 28/46 (60%)
 Frame = -1

Query: 278 DVFWPRLREAVHKKLSPKDAAQFCDSFRQVHECLVDAALNSKTIHK 141
           D FW  LR +V +K+  ++A QFC  F++VHE LV  AL    I +
Sbjct: 65  DPFWLHLRSSVAEKMGAENAEQFCKEFQKVHEQLVYKALPLDAIRR 110


>tr|B6U6D8|B6U6D8_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 141

 Score = 41.2 bits (95), Expect = 0.026
 Identities = 21/57 (36%), Positives = 28/57 (49%)
 Frame = -1

Query: 287 GNGDVFWPRLREAVHKKLSPKDAAQFCDSFRQVHECLVDAALNSKTIHKALKTWEQR 117
           G  D+F  +L+ A   K+    A  FC +F +VHE LV   LN     K L  +E R
Sbjct: 52  GGRDMFMQKLKMAAENKIGATKAEFFCKTFEEVHEKLVHRELNLDAAKKFLSAYESR 108


>tr|B6TR62|B6TR62_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 107

 Score = 39.3 bits (90), Expect = 0.098
 Identities = 20/55 (36%), Positives = 27/55 (49%)
 Frame = -1

Query: 287 GNGDVFWPRLREAVHKKLSPKDAAQFCDSFRQVHECLVDAALNSKTIHKALKTWE 123
           G  D+F  +L+ A   K+    A  FC +F +VHE LV   LN     K L  +E
Sbjct: 52  GGRDMFMQKLKMAAENKIGATKAEFFCKTFEEVHEKLVHRELNLDAAKKFLSAYE 106


>tr|B6SN90|B6SN90_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 107

 Score = 39.3 bits (90), Expect = 0.098
 Identities = 20/55 (36%), Positives = 27/55 (49%)
 Frame = -1

Query: 287 GNGDVFWPRLREAVHKKLSPKDAAQFCDSFRQVHECLVDAALNSKTIHKALKTWE 123
           G  D+F  +L+ A   K+    A  FC +F +VHE LV   LN     K L  +E
Sbjct: 52  GGRDMFMQKLKMAAENKIGATKAEFFCKTFEEVHEKLVHRELNLDAAKKFLSAYE 106


>tr|B6TLG0|B6TLG0_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 106

 Score = 37.4 bits (85), Expect = 0.37
 Identities = 19/52 (36%), Positives = 26/52 (50%)
 Frame = -1

Query: 278 DVFWPRLREAVHKKLSPKDAAQFCDSFRQVHECLVDAALNSKTIHKALKTWE 123
           D+F  +L+ A  KK+    A  FC +F + HE LV   LN     K L  +E
Sbjct: 54  DLFMQKLKMAAEKKIGTTKAEFFCKAFEETHEKLVYKELNLDAAKKFLSAYE 105


>tr|B6SGK5|B6SGK5_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 106

 Score = 37.4 bits (85), Expect = 0.37
 Identities = 19/52 (36%), Positives = 26/52 (50%)
 Frame = -1

Query: 278 DVFWPRLREAVHKKLSPKDAAQFCDSFRQVHECLVDAALNSKTIHKALKTWE 123
           D+F  +L+ A  KK+    A  FC +F + HE LV   LN     K L  +E
Sbjct: 54  DLFMQKLKMAAEKKIGTTKAEFFCKAFEETHEKLVYKELNLDAAKKFLSAYE 105


>tr|A7PFW0|A7PFW0_VITVI Chromosome chr6 scaffold_15, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00017272001
           PE=4 SV=1
          Length = 81

 Score = 37.4 bits (85), Expect = 0.37
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = -1

Query: 272 FWPRLREAVHKKLSPKDAAQFCDSFRQVHECLV 174
           FW +L+    +K+ P +A +FC +F+QVH  LV
Sbjct: 27  FWEKLKVVAERKVGPVEAERFCKAFQQVHRKLV 59


>tr|Q6NQD2|Q6NQD2_ARATH At5g12240 (MRNA, , clone: RAFL22-05-F16)
           OS=Arabidopsis thaliana PE=4 SV=1
          Length = 114

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = -1

Query: 278 DVFWPRLREAVHKKLSPKDAAQFCDSFRQVHECLVDAALNSKTIHKAL 135
           D FW  L+ A  KK+   +A +FC +F ++H+ LV   L+ +   + L
Sbjct: 64  DKFWENLKAAAEKKVGGVEAERFCKAFEKLHKKLVYEELDPEAAKRYL 111