BP917062
Clone id YMU001_000095_D09
Library
Length 421
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000095_D09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
ACCAAGGGTTGTGTGGTAACCCTTTCCTGCTCTTCCCTTTTCTGTATGTTTTCCCCATTG
ATTTACTCTACTGCTTCGCATAATGCATGTTTGAAAATTTGCCAGGTGTTTCAATGTTAG
AGTGGCATACATTCTTGAGACAAGATTTCCTGTCTAGGCATGCTGCATATGCTTGCTTCT
TATCTATTTGCATCTTATATGTCCATGATCCGGGTTGGGGCTGTTTTTCCTCAATTCGAG
CAGGTATGTGCAGCCATACATGTATTGGTGTGTGATCTGAGCTTGGTGATCTGTTTCCAA
TAGCAAGATTATGCACTATGTGGGACGCCTCATAGGAAACCAATACATAATCAATAGCAC
TCATGCCCTTATTGGCTGTATAGCATGTACATTCCCCTGAATCAGCAAATCTTTGTGCTC
C
■■Homology search results ■■ -
sp_hit_id Q3US16
Definition sp|Q3US16|TFSC1_MOUSE TFIIS central domain-containing protein 1 OS=Mus musculus
Align length 59
Score (bit) 31.2
E-value 1.7
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917062|Adiantum capillus-veneris mRNA, clone:
YMU001_000095_D09.
(421 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q3US16|TFSC1_MOUSE TFIIS central domain-containing protein 1 ... 31 1.7
sp|Q9Y5S8|NOX1_HUMAN NADPH oxidase 1 OS=Homo sapiens GN=NOX1 PE=... 30 4.9
sp|O25869|TRPE_HELPY Anthranilate synthase component 1 OS=Helico... 30 5.0
sp|Q1H0E9|URED_METFK Urease accessory protein ureD OS=Methylobac... 29 6.6
sp|P18634|YL392_YEAST Uncharacterized protein YLR392C OS=Sacchar... 29 8.6
sp|P70545|S13A2_RAT Solute carrier family 13 member 2 OS=Rattus ... 29 8.6

>sp|Q3US16|TFSC1_MOUSE TFIIS central domain-containing protein 1
OS=Mus musculus PE=2 SV=1
Length = 359

Score = 31.2 bits (69), Expect = 1.7
Identities = 20/59 (33%), Positives = 25/59 (42%)
Frame = -1

Query: 403 DSGECTCYTANKGMSAIDYVLVSYEASHIVHNLAIGNRSPSSDHTPIHVWLHIPARIEE 227
D ECT K LVS S V L S +DHT +H+W ++ IEE
Sbjct: 163 DDSECT----RKSSGVFQGTLVSVR-SKCVELLYTALASSCTDHTEVHIWQNLAREIEE 216


>sp|Q9Y5S8|NOX1_HUMAN NADPH oxidase 1 OS=Homo sapiens GN=NOX1 PE=1
SV=2
Length = 564

Score = 29.6 bits (65), Expect = 4.9
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 5/30 (16%)
Frame = +3

Query: 87 MFENLPGVSMLEWHTFL-----RQDFLSRH 161
+F N P +S+LEWH F +DF S H
Sbjct: 325 IFVNCPSISLLEWHPFTLTSAPEEDFFSIH 354


>sp|O25869|TRPE_HELPY Anthranilate synthase component 1
OS=Helicobacter pylori GN=trpE PE=3 SV=1
Length = 500

Score = 29.6 bits (65), Expect = 5.0
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = -1

Query: 256 WLHIPARIEEKQPQPGSWTYKM-QIDKKQAYAACLDRKSCLKNVCHSNIET 107
++ P + EK QP + ++ +I+ K + L K+CLK +C+ NI T
Sbjct: 10 YIPYPLALYEKLEQPHTLLFESAEIESKAHTKSLLMAKACLKLICNHNIVT 60


>sp|Q1H0E9|URED_METFK Urease accessory protein ureD
OS=Methylobacillus flagellatus (strain KT / ATCC 51484 /
DSM 6875) GN=ureD PE=3 SV=1
Length = 285

Score = 29.3 bits (64), Expect = 6.6
Identities = 21/78 (26%), Positives = 31/78 (39%)
Frame = -1

Query: 277 DHTPIHVWLHIPARIEEKQPQPGSWTYKMQIDKKQAYAACLDRKSCLKNVCHSNIETPGK 98
D + L AR P G W Q+ QA L SCL+ + NI G
Sbjct: 71 DQLQLQATLEASARALLTTPGAGKWYKANQLSASQAVRFHLAANSCLEWLPQENILFDG- 129

Query: 97 FSNMHYAKQ*SKSMGKTY 44
SN+H++ + + G +
Sbjct: 130 -SNVHFSSEIDLAEGAVF 146


>sp|P18634|YL392_YEAST Uncharacterized protein YLR392C
OS=Saccharomyces cerevisiae GN=YLR392C PE=1 SV=3
Length = 518

Score = 28.9 bits (63), Expect = 8.6
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = -1

Query: 268 PIHVWLHIPARIEEKQPQPGSWTYKMQIDKKQAYAACLDRKSC--LKNVCHSNIETPGKF 95
P +VW + + + +PGS+ Y Q DK CL + + V SN P F
Sbjct: 89 PDNVWNALDGSSKPFKVKPGSYNYSFQFDKFPRKPECLKNHTAKTVAFVTRSNARLPPTF 148

Query: 94 SNMHY 80
N H+
Sbjct: 149 -NSHW 152


>sp|P70545|S13A2_RAT Solute carrier family 13 member 2 OS=Rattus
norvegicus GN=Slc13a2 PE=2 SV=2
Length = 587

Score = 28.9 bits (63), Expect = 8.6
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = -2

Query: 411 DLLIQGNVHAIQPIRA*VLLIMYWFPMRRPT*CIILLL 298
+L++QG V+++ P A V+ WF PT I+LLL
Sbjct: 237 NLVLQGQVNSLFPQNANVVNFASWFGFAFPTMIILLLL 274


tr_hit_id B6F2P7
Definition tr|B6F2P7|B6F2P7_LIBAS Exodeoxyribonuclease III protein OS=Candidatus Liberibacter asiaticus str. psy62
Align length 78
Score (bit) 36.6
E-value 0.63
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917062|Adiantum capillus-veneris mRNA, clone:
YMU001_000095_D09.
(421 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B6F2P7|B6F2P7_LIBAS Exodeoxyribonuclease III protein OS=Candi... 37 0.63
tr|A3K0E2|A3K0E2_9RHOB Aminotransferase, DegT/DnrJ/EryC1/StrS fa... 33 7.0

>tr|B6F2P7|B6F2P7_LIBAS Exodeoxyribonuclease III protein
OS=Candidatus Liberibacter asiaticus str. psy62
GN=CLIBASIA_00828 PE=4 SV=1
Length = 281

Score = 36.6 bits (83), Expect = 0.63
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 4/78 (5%)
Frame = -1

Query: 409 FADSGECTCYTANKGMSAIDYVLVSYEASHIVHNLAIGNR----SPSSDHTPIHVWLHIP 242
+ADS ++ NKG+ ID++++S EA+ ++H+ I + + SDHTP+ V L IP
Sbjct: 211 YADS-----WSKNKGIR-IDHIMLSPEATSLLHSARIDTKPRGWTKPSDHTPVIVSLDIP 264

Query: 241 ARIEEKQPQPGSWTYKMQ 188
E ++ Q S + M+
Sbjct: 265 ---EPRKKQQDSTSQNMK 279


>tr|A3K0E2|A3K0E2_9RHOB Aminotransferase, DegT/DnrJ/EryC1/StrS
family protein OS=Sagittula stellata E-37 GN=SSE37_23484
PE=4 SV=1
Length = 404

Score = 33.1 bits (74), Expect = 7.0
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = -1

Query: 373 NKGMSAIDYVLVSYEASHIVHNLAIGNRSPSSDHTPIHV--WLHIPARIEEKQPQPGSWT 200
N MS + ++ + HI + G R+ T I WLH+PAR+E + P S
Sbjct: 248 NLRMSNLSAAVIRPQIPHIARRVTDGRRNHDRVATQIDASPWLHVPARLEPEMRAPDSLQ 307

Query: 199 YKM 191
+ +
Sbjct: 308 FNV 310