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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917068
Clone id YMU001_000095_E05
Library
Length 503
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000095_E05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GGGAGGGAATATCTTGCAAGATATCAAAGGTATTAGGAGATGCATAACCAGAAAAACCCT
GGTTTAGATCTAAATGTTTCTTGGATAATTGAAAGCCTTCTGCATCCACAAGTCGTTTCC
CCTTTTCCATGGGCTTTGGATTTTCGAGGTAGATGGTGAGGATGTTGCCTGGTTCCCTGC
ATGATATAGTGTTTTCTTGTTGTTTTGTAAGGCTGATTTGTAGTTGCCTGCGGGGACAAC
ATATTCTGGTGAGGCAGTTGGTGTAGATGGTGGGGCAACTTTCCAGCTGAATTAGCTAGC
TTACCAAATATTTGATCTTTTGGGACTAGGTGTCTACTACCAAGGAAGGAGGGAATAAGC
TCAACTGATTCCCTGGCCAGTGTAGGGAAATTTTTGGAGAAGTGACCCAAGTTTCCACAG
TGATAACATGAATCAGCTAACTTTCCCCATTTGAGATAGATGACCAACCTGCCAATAGGC
TCTAACTCAATTTCCAGAGTATC
■■Homology search results ■■ -
sp_hit_id P49843
Definition sp|P49843|GCR_ONCMY Glucocorticoid receptor OS=Oncorhynchus mykiss
Align length 55
Score (bit) 36.6
E-value 0.068
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917068|Adiantum capillus-veneris mRNA, clone:
YMU001_000095_E05.
         (503 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P49843|GCR_ONCMY Glucocorticoid receptor OS=Oncorhynchus myki...    37   0.068
sp|P63128|POK4_HUMAN HERV-K_6q14.1 provirus ancestral Gag-Pol po...    33   0.58 
sp|P62685|GAK6_HUMAN HERV-K_8p23.1 provirus ancestral Gag polypr...    33   0.58 
sp|P62684|GAK5_HUMAN HERV-K_19p13.11 provirus ancestral Gag poly...    33   0.58 
sp|P63126|GAK4_HUMAN HERV-K_6q14.1 provirus ancestral Gag polypr...    33   0.58 
sp|Q9YNA8|GAK3_HUMAN HERV-K_19q12 provirus ancestral Gag polypro...    33   0.58 
sp|Q7LDI9|GAK2_HUMAN HERV-K_7p22.1 provirus ancestral Gag polypr...    33   0.58 
sp|P62683|GAK1_HUMAN HERV-K_12q14.1 provirus ancestral Gag polyp...    33   0.58 
sp|P63130|GAK12_HUMAN HERV-K_1q22 provirus ancestral Gag polypro...    33   0.58 
sp|P63145|GAK11_HUMAN HERV-K_22q11.21 provirus ancestral Gag pol...    33   0.58 
sp|P87889|GAK10_HUMAN HERV-K_5q33.3 provirus ancestral Gag polyp...    33   0.58 
sp|Q6XKE6|POLG_PVCV2 Genome polyprotein OS=Petunia vein clearing...    32   1.3  
sp|Q91DM0|POLG_PVCV1 Genome polyprotein OS=Petunia vein clearing...    32   1.3  
sp|P11309|PIM1_HUMAN Proto-oncogene serine/threonine-protein kin...    32   2.2  
sp|Q7TNK1|RFX4_MOUSE Transcription factor RFX4 OS=Mus musculus G...    30   4.9  
sp|A1DP58|UTP10_NEOFI U3 small nucleolar RNA-associated protein ...    30   6.4  
sp|Q4WLI9|UTP10_ASPFU U3 small nucleolar RNA-associated protein ...    30   6.4  
sp|Q33E94|RFX4_HUMAN Transcription factor RFX4 OS=Homo sapiens G...    30   6.4  
sp|Q8C3X4|GUF1_MOUSE GTP-binding protein GUF1 homolog OS=Mus mus...    30   6.4  
sp|Q9HDB9|GAK8_HUMAN HERV-K_3q12.3 provirus ancestral Gag polypr...    30   6.4  
sp|Q5KGP6|XPOT_CRYNE Exportin-T OS=Cryptococcus neoformans GN=LO...    30   8.3  

>sp|P49843|GCR_ONCMY Glucocorticoid receptor OS=Oncorhynchus mykiss
           GN=nr3c1 PE=1 SV=1
          Length = 758

 Score = 36.6 bits (83), Expect = 0.068
 Identities = 20/55 (36%), Positives = 32/55 (58%)
 Frame = -2

Query: 172 PGNILTIYLENPKPMEKGKRLVDAEGFQLSKKHLDLNQGFSGYASPNTFDILQDI 8
           P ++ ++  EN  PM+K +  + +  F  S+K LD+N+   G    NT DILQD+
Sbjct: 132 PHDLFSLKTENFSPMDKDRLDMGSVSFGQSQKDLDVNERLLG---DNTMDILQDL 183


>sp|P63128|POK4_HUMAN HERV-K_6q14.1 provirus ancestral Gag-Pol
           polyprotein OS=Homo sapiens PE=3 SV=3
          Length = 1117

 Score = 33.5 bits (75), Expect = 0.58
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 428 CYHCGNLGHFSKNFPTLARESVEL 357
           CY+CG +GH  KN P L ++++ +
Sbjct: 546 CYNCGQIGHLKKNCPVLNKQNITI 569


>sp|P62685|GAK6_HUMAN HERV-K_8p23.1 provirus ancestral Gag
           polyprotein OS=Homo sapiens PE=1 SV=2
          Length = 647

 Score = 33.5 bits (75), Expect = 0.58
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 428 CYHCGNLGHFSKNFPTLARESVEL 357
           CY+CG +GH  KN P L ++++ +
Sbjct: 546 CYNCGQIGHLKKNCPVLNKQNITI 569


>sp|P62684|GAK5_HUMAN HERV-K_19p13.11 provirus ancestral Gag
           polyprotein OS=Homo sapiens PE=1 SV=2
          Length = 666

 Score = 33.5 bits (75), Expect = 0.58
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 428 CYHCGNLGHFSKNFPTLARESVEL 357
           CY+CG +GH  KN P L ++++ +
Sbjct: 546 CYNCGQIGHLKKNCPVLNKQNITI 569


>sp|P63126|GAK4_HUMAN HERV-K_6q14.1 provirus ancestral Gag
           polyprotein OS=Homo sapiens PE=1 SV=2
          Length = 666

 Score = 33.5 bits (75), Expect = 0.58
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 428 CYHCGNLGHFSKNFPTLARESVEL 357
           CY+CG +GH  KN P L ++++ +
Sbjct: 546 CYNCGQIGHLKKNCPVLNKQNITI 569


>sp|Q9YNA8|GAK3_HUMAN HERV-K_19q12 provirus ancestral Gag
           polyprotein OS=Homo sapiens PE=1 SV=3
          Length = 666

 Score = 33.5 bits (75), Expect = 0.58
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 428 CYHCGNLGHFSKNFPTLARESVEL 357
           CY+CG +GH  KN P L ++++ +
Sbjct: 546 CYNCGQIGHLKKNCPVLNKQNITI 569


>sp|Q7LDI9|GAK2_HUMAN HERV-K_7p22.1 provirus ancestral Gag
           polyprotein OS=Homo sapiens GN=ERVK6 PE=1 SV=3
          Length = 666

 Score = 33.5 bits (75), Expect = 0.58
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 428 CYHCGNLGHFSKNFPTLARESVEL 357
           CY+CG +GH  KN P L ++++ +
Sbjct: 546 CYNCGQIGHLKKNCPVLNKQNITI 569


>sp|P62683|GAK1_HUMAN HERV-K_12q14.1 provirus ancestral Gag
           polyprotein OS=Homo sapiens PE=1 SV=2
          Length = 666

 Score = 33.5 bits (75), Expect = 0.58
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 428 CYHCGNLGHFSKNFPTLARESVEL 357
           CY+CG +GH  KN P L ++++ +
Sbjct: 546 CYNCGQIGHLKKNCPVLNKQNITI 569


>sp|P63130|GAK12_HUMAN HERV-K_1q22 provirus ancestral Gag
           polyprotein OS=Homo sapiens PE=3 SV=2
          Length = 666

 Score = 33.5 bits (75), Expect = 0.58
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 428 CYHCGNLGHFSKNFPTLARESVEL 357
           CY+CG +GH  KN P L ++++ +
Sbjct: 546 CYNCGQIGHLKKNCPVLNKQNITI 569


>sp|P63145|GAK11_HUMAN HERV-K_22q11.21 provirus ancestral Gag
           polyprotein OS=Homo sapiens PE=1 SV=2
          Length = 666

 Score = 33.5 bits (75), Expect = 0.58
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 428 CYHCGNLGHFSKNFPTLARESVEL 357
           CY+CG +GH  KN P L ++++ +
Sbjct: 546 CYNCGQIGHLKKNCPVLNKQNITI 569
tr_hit_id B6IVR6
Definition tr|B6IVR6|B6IVR6_RHOCS Cytochrome c-type biogenesis protein CycH OS=Rhodospirillum centenum (strain ATCC 51521 / SW)
Align length 69
Score (bit) 38.5
E-value 0.18
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917068|Adiantum capillus-veneris mRNA, clone:
YMU001_000095_E05.
         (503 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6IVR6|B6IVR6_RHOCS Cytochrome c-type biogenesis protein CycH...    39   0.18 
tr|B3C9P4|B3C9P4_9BACE Putative uncharacterized protein OS=Bacte...    35   1.5  
tr|B2WES0|B2WES0_PYRTR Putative uncharacterized protein OS=Pyren...    34   4.5  
tr|P87891|P87891_9RETR Gag polyprotein (Fragment) OS=Human endog...    33   5.8  
tr|B5E0D1|B5E0D1_DROPS GA24215 OS=Drosophila pseudoobscura pseud...    33   5.8  
tr|B4GGE2|B4GGE2_DROPE GL17329 OS=Drosophila persimilis GN=GL173...    33   5.8  
tr|Q4JNY4|Q4JNY4_HUMAN Gag (Fragment) OS=Homo sapiens GN=gag PE=...    33   5.8  
tr|B4J278|B4J278_DROGR GH16606 OS=Drosophila grimshawi GN=GH1660...    33   7.6  
tr|Q8RUT2|Q8RUT2_ARATH Putative retroelement pol polyprotein OS=...    33   9.9  
tr|Q84X21|Q84X21_ARATH Putative uncharacterized protein At2g0682...    33   9.9  
tr|A5JZR6|A5JZR6_PLAVI CAF1 ribonuclease domain containing prote...    33   9.9  
tr|Q6CB70|Q6CB70_YARLI YALI0C21450p OS=Yarrowia lipolytica GN=YA...    33   9.9  

>tr|B6IVR6|B6IVR6_RHOCS Cytochrome c-type biogenesis protein CycH
           OS=Rhodospirillum centenum (strain ATCC 51521 / SW)
           GN=cycH PE=4 SV=1
          Length = 474

 Score = 38.5 bits (88), Expect = 0.18
 Identities = 17/69 (24%), Positives = 37/69 (53%)
 Frame = -3

Query: 327 SPKRSNIW*AS*FSWKVAPPSTPTASPEYVVPAGNYKSALQNNKKTLYHAGNQATSSPST 148
           +P+R+++W A  ++  +AP      SPE++       +   +N + L+H G  A  +  T
Sbjct: 383 APERADVWLA--YAGTLAPEDKAAPSPEFLAALDRVLAIEPDNLQALWHRGEAAAGTGDT 440

Query: 147 SKIQSPWKR 121
           ++ ++ W+R
Sbjct: 441 ARARASWQR 449


>tr|B3C9P4|B3C9P4_9BACE Putative uncharacterized protein
           OS=Bacteroides intestinalis DSM 17393 GN=BACINT_01208
           PE=4 SV=1
          Length = 838

 Score = 35.4 bits (80), Expect = 1.5
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = -3

Query: 234 PAGNYKSALQNNKKTLYHAGNQATSSPSTSKIQSPWKRGNDLWMQKAFN 88
           PAGN+     N     + AG  A  S   S I +PWK   D+W+++ FN
Sbjct: 113 PAGNWTDIEYNANG--WKAGKAAFGSSDRSMIGTPWKSEPDIWVRREFN 159


>tr|B2WES0|B2WES0_PYRTR Putative uncharacterized protein
           OS=Pyrenophora tritici-repentis (strain Pt-1C-BFP)
           GN=PTRG_08643 PE=4 SV=1
          Length = 353

 Score = 33.9 bits (76), Expect = 4.5
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = +3

Query: 144 SR*MVRMLPGSLHDIVFSCCFVRLICSCLRGQHILVRQLV*MVGQLSS 287
           +R +V   PG  HD +F    +RL C CL  +H L  Q   ++G L+S
Sbjct: 57  ARNLVSAAPGD-HDTLFHLVHIRLACLCLLQEHALAAQEAKVLGDLNS 103


>tr|P87891|P87891_9RETR Gag polyprotein (Fragment) OS=Human
           endogenous retrovirus K GN=gag PE=4 SV=1
          Length = 426

 Score = 33.5 bits (75), Expect = 5.8
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 428 CYHCGNLGHFSKNFPTLARESVEL 357
           CY+CG +GH  KN P L ++++ +
Sbjct: 306 CYNCGQIGHLKKNCPVLNKQNITI 329


>tr|B5E0D1|B5E0D1_DROPS GA24215 OS=Drosophila pseudoobscura
           pseudoobscura GN=GA24215 PE=4 SV=1
          Length = 713

 Score = 33.5 bits (75), Expect = 5.8
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
 Frame = -1

Query: 227 ATTNQPYKTTRKHYIMQGTRQH-PHHLPRKSKAHGKGETTC--GCRRLSIIQ-ETFRSKP 60
           +TT     TTR+ Y   G RQH PHH PR+ K       +C      +S+I+ E F  + 
Sbjct: 431 STTTSRTPTTRRPYPTTGQRQHQPHHHPRQHKPRKPKPDSCLTSYDAISMIRGELFIFRG 490

Query: 59  GFFW 48
            F W
Sbjct: 491 QFLW 494


>tr|B4GGE2|B4GGE2_DROPE GL17329 OS=Drosophila persimilis GN=GL17329
           PE=4 SV=1
          Length = 711

 Score = 33.5 bits (75), Expect = 5.8
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
 Frame = -1

Query: 227 ATTNQPYKTTRKHYIMQGTRQH-PHHLPRKSKAHGKGETTC--GCRRLSIIQ-ETFRSKP 60
           +TT     TTR+ Y   G RQH PHH PR+ K       +C      +S+I+ E F  + 
Sbjct: 433 STTTSRTPTTRRPYPTTGQRQHQPHHHPRQHKPRKPKPDSCLTSYDAISMIRGELFIFRG 492

Query: 59  GFFW 48
            F W
Sbjct: 493 QFLW 496


>tr|Q4JNY4|Q4JNY4_HUMAN Gag (Fragment) OS=Homo sapiens GN=gag PE=4
           SV=1
          Length = 668

 Score = 33.5 bits (75), Expect = 5.8
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 428 CYHCGNLGHFSKNFPTLARESVEL 357
           CY+CG +GH  KN P L ++++ +
Sbjct: 545 CYNCGQIGHLKKNCPVLNKQNITI 568


>tr|B4J278|B4J278_DROGR GH16606 OS=Drosophila grimshawi GN=GH16606
           PE=4 SV=1
          Length = 748

 Score = 33.1 bits (74), Expect = 7.6
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -3

Query: 267 STPTASPEYVVPAGNYKSALQNNKKTLYHAGNQATSSPSTSKIQS 133
           +TPTA+P+ VV      S  Q    ++Y   N  T SPS S+  S
Sbjct: 573 TTPTATPQKVVCVQRTPSRTQPRASSIYTTSNPKTKSPSISRASS 617


>tr|Q8RUT2|Q8RUT2_ARATH Putative retroelement pol polyprotein
           OS=Arabidopsis thaliana GN=At2g06820 PE=4 SV=1
          Length = 267

 Score = 32.7 bits (73), Expect = 9.9
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 473 GRLVIYLKWGKLADSCYHCGNLGHFSKNFP 384
           G  V+YL +  L + C HC  L H  KN P
Sbjct: 180 GEAVVYLDYKNLKNHCLHCQRLSHEKKNCP 209


>tr|Q84X21|Q84X21_ARATH Putative uncharacterized protein
           At2g06820/T14A4.2 (Putative uncharacterized protein)
           OS=Arabidopsis thaliana GN=At2g06820/T14A4.2 PE=2 SV=1
          Length = 169

 Score = 32.7 bits (73), Expect = 9.9
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 473 GRLVIYLKWGKLADSCYHCGNLGHFSKNFP 384
           G  V+YL +  L + C HC  L H  KN P
Sbjct: 82  GEAVVYLDYKNLKNHCLHCQRLSHEKKNCP 111