BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917074|Adiantum capillus-veneris mRNA, clone:
YMU001_000095_E11.
         (418 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P29114|LOX1_HORVU Lipoxygenase 1 OS=Hordeum vulgare GN=LOX1.1...    32   0.76 
sp|Q7Z403|TMC6_HUMAN Transmembrane channel-like protein 6 OS=Hom...    30   2.9  
sp|Q9M5Z9|RS23_EUPES 40S ribosomal protein S23 OS=Euphorbia esul...    30   2.9  
sp|Q70EL1|UBP54_HUMAN Inactive ubiquitin carboxyl-terminal hydro...    30   3.8  
sp|P92959|RK24_ARATH 50S ribosomal protein L24, chloroplastic OS...    30   3.8  
sp|A6L1V8|LEUC_BACV8 3-isopropylmalate dehydratase large subunit...    30   4.9  
sp|Q7TN60|TMC6_MOUSE Transmembrane channel-like protein 6 OS=Mus...    29   8.4  
sp|P73515|SPKE_SYNY3 Serine/threonine-protein kinase-like protei...    29   8.4  

>sp|P29114|LOX1_HORVU Lipoxygenase 1 OS=Hordeum vulgare GN=LOX1.1
           PE=1 SV=2
          Length = 862

 Score = 32.3 bits (72), Expect = 0.76
 Identities = 21/69 (30%), Positives = 29/69 (42%)
 Frame = -2

Query: 261 PKLEGTRILRKTIELMFLKSHLKVGAMHLVMTRVLGLKKVRKMTWIRMLSICAKVMGGGK 82
           PK+     LRK   L  +K  L VG   L+   V  + +  K  W        +V+ G  
Sbjct: 311 PKVAALEELRKQFPLQLIKDLLPVGGDSLLKLPVPHIIQENKQAWRTDEEFAREVLAGVN 370

Query: 81  NYMITRILE 55
             MITR+ E
Sbjct: 371 PVMITRLTE 379


>sp|Q7Z403|TMC6_HUMAN Transmembrane channel-like protein 6 OS=Homo
           sapiens GN=TMC6 PE=1 SV=2
          Length = 805

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = +2

Query: 83  FPPPITFAQIDNILIHVIFLTFFKPSTLVITRCMAPTLRWLFRNISSMVFLKILVPSSLG 262
           F P +   QI  +L     L F+   T ++  C AP   WL  ++S++    +  P+ LG
Sbjct: 609 FSPLLPAVQIIKLL-----LVFYVKKTSLLANCQAPRRPWLASHMSTVFLTLLCFPAFLG 663


>sp|Q9M5Z9|RS23_EUPES 40S ribosomal protein S23 OS=Euphorbia esula
           GN=RPS23 PE=2 SV=1
          Length = 142

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -1

Query: 295 GGCPKVVSHLETQAGGNKDFEKDHRADVSEKPSQGWGHA 179
           G   K+ SH  TQ   +K ++K H  +  +KP  G  HA
Sbjct: 8   GAARKLKSHRRTQRWADKSYKKSHLGNEWKKPFAGSSHA 46


>sp|Q70EL1|UBP54_HUMAN Inactive ubiquitin carboxyl-terminal
           hydrolase 54 OS=Homo sapiens GN=USP54 PE=1 SV=4
          Length = 1684

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
 Frame = -1

Query: 418 YESDNDGHSLKKAQGNDIVSASRRDWERNSLPVKHYHHLDKGGCPKVVSHLETQAGGNKD 239
           Y+S++ G          I S +R D    S P KH HH        VVSH  + + G   
Sbjct: 376 YDSEDSGRE------PSISSDTRTDSSTESYPYKHSHH------ESVVSHFSSDSQGTVI 423

Query: 238 FEKDHRADVSEKPSQGWGH---ASCDDKSAGFK 149
           +  ++  D   + S+  GH   + C+ K    K
Sbjct: 424 YNVEN--DSMSQSSRDTGHLTDSECNQKHTSKK 454


>sp|P92959|RK24_ARATH 50S ribosomal protein L24, chloroplastic
           OS=Arabidopsis thaliana GN=RPL24 PE=2 SV=2
          Length = 198

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
 Frame = -1

Query: 391 LKKAQGNDIVSASRRDWER-----NSLPVKHYHHLDKGGCPKVVS 272
           +K A+   +V A  + WER     NSLP+ H  H+  G   KV+S
Sbjct: 39  VKPAENPCLVLAKLKRWERKECKPNSLPILHKMHVKFGDTVKVIS 83


>sp|A6L1V8|LEUC_BACV8 3-isopropylmalate dehydratase large subunit
           OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 /
           NCTC 11154) GN=leuC PE=3 SV=1
          Length = 460

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 14/73 (19%)
 Frame = -1

Query: 322 VKHYHHLDKG-GCPKVVSHLET-QAGGNKDFEKDHRADVSE---------KPSQGWG--- 185
           +K   H  KG    K VSH +T ++  +  F+K+ R D ++          P  G G   
Sbjct: 243 IKGREHAPKGVDWDKAVSHWKTLKSDDDAVFDKEIRFDAADIQPMITYGTNPGMGMGITE 302

Query: 184 HASCDDKSAGFKE 146
           H   DDKSA FK+
Sbjct: 303 HIPVDDKSASFKK 315


>sp|Q7TN60|TMC6_MOUSE Transmembrane channel-like protein 6 OS=Mus
           musculus GN=Tmc6 PE=2 SV=2
          Length = 810

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +2

Query: 122 LIHVIFLTFFKPSTLVITRCMAPTLRWLFRNISSMVFLKILVPSSLG 262
           ++ ++FL   K ++L+   C AP   WL  ++S++    +  PS LG
Sbjct: 617 ILRLLFLFHIKKASLM-ANCQAPRRPWLASHMSTVFLTLLCFPSFLG 662


>sp|P73515|SPKE_SYNY3 Serine/threonine-protein kinase-like protein E
           OS=Synechocystis sp. (strain PCC 6803) GN=spkE PE=3 SV=1
          Length = 614

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1

Query: 388 KKAQGNDIVSASRRDWERNSLPVKHYHHLDK 296
           ++ QG        R W R  LPV HY H+ K
Sbjct: 106 RRLQGKAFTELEVRQWCRQLLPVLHYLHIQK 136

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917074|Adiantum capillus-veneris mRNA, clone:
YMU001_000095_E11.
         (418 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8CA12|B8CA12_THAPS Predicted protein OS=Thalassiosira pseudo...    39   0.17 
tr|A4CN66|A4CN66_9FLAO Putative uncharacterized protein OS=Robig...    34   3.2  

>tr|B8CA12|B8CA12_THAPS Predicted protein OS=Thalassiosira
           pseudonana CCMP1335 GN=THAPSDRAFT_24434 PE=4 SV=1
          Length = 1089

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
 Frame = -1

Query: 418 YESDNDGHSLKKAQGNDI--VSASRRDWERNSLPVKHYHHLDKGGCPKVVSHLETQAGGN 245
           YESD+DG ++   +  D     +++ D ERNS    H  +   GG         T AG  
Sbjct: 5   YESDDDGSAINSNEMRDQNRSPSNQSDDERNSCNCNHLQNTLNGGVASATKDAAT-AGSA 63

Query: 244 KDFEKDHRADVSEKPSQGWGHASCDDKSAGFKEG 143
                D + D +   S+G G    DD+ AG   G
Sbjct: 64  AAATGDGKNDATNDGSEGSGDDDDDDEKAGSNSG 97


>tr|A4CN66|A4CN66_9FLAO Putative uncharacterized protein
           OS=Robiginitalea biformata HTCC2501 GN=RB2501_12297 PE=4
           SV=1
          Length = 250

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
 Frame = -1

Query: 418 YESDNDGHSLKKAQGNDIVSASRRDWERNSLPVKHYHHL--DKGGCPKVVSHLETQAGGN 245
           +E      S K  +GN+  +  R   + +S  V+ +  L  D  G   + + LETQ GG+
Sbjct: 39  FEEATKLESFKWHKGNNQATIVRAWMDSSSHTVRRFEALRVDATGNENLSAVLETQPGGS 98

Query: 244 KDFE-KDHRADVSEKPSQGWGHASCDDKSAGF 152
            D    DHR +    PSQ W     D  S G+
Sbjct: 99  MDIRLGDHRQEFQNAPSQ-WHSYDFDFASLGY 129