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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917082
Clone id YMU001_000095_F07
Library
Length 516
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000095_F07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTCTACATTTAACAAAATCAGTCCACAAAATTGAACTTATGTTTCTCAAGTGCATGAAAG
AGGGAACCCCAGTTTAGGTGCTACGTCTGTATGCCTTACCCTAAAAATAGAGTCGGCACG
CAATCGGTTGGCAACTACATAGCGCCTATGCTGGAAGAGGCTGAAAGCTTGCAGGATGCC
CAAGTGGTGTTTGAACAGGTTGGCTCATCAAACATTATTGGGGCAAGTTTGACAAGTTCA
AATTTTAATGGAACAGATACGTGAAAAGGGAGAATCTAAGAACTGAATTGTTTTGATCAG
CTGAAGCATACTGGCAAGTTCAAATTTTAATGGAACAGAGCTATTCTCCTATCACATTTG
TTCGTGCCTTCAGCGCTTGTGTAAGCTTACGAGCCACTCAGGAGGGCAAAGAAATACAAG
CTGATATTGAAAGCAATAGCTCGTCGGGTGATGTGCACCTTCCTTAAGAGTGCCATGCCT
ACTTATTGGTAAACCATTTACATGTCTAGCACTCTC
■■Homology search results ■■ -
sp_hit_id Q9SIT7
Definition sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana
Align length 49
Score (bit) 28.5
E-value 0.058
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917082|Adiantum capillus-veneris mRNA, clone:
YMU001_000095_F07.
         (516 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protei...    28   0.058
sp|Q8G381|DNAE2_BRUSU Error-prone DNA polymerase OS=Brucella sui...    33   0.80 
sp|Q8YEK2|DNAE2_BRUME Error-prone DNA polymerase OS=Brucella mel...    33   0.80 
sp|Q57FU7|DNAE2_BRUAB Error-prone DNA polymerase OS=Brucella abo...    33   0.80 
sp|Q9M2Y7|PP274_ARATH Pentatricopeptide repeat-containing protei...    25   2.0  
sp|Q9FLX6|PP430_ARATH Pentatricopeptide repeat-containing protei...    29   3.3  
sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protei...    25   4.2  
sp|Q9P9L3|SODF_ACIAM Superoxide dismutase [Fe] OS=Acidianus ambi...    30   8.7  

>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein
           At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=2 SV=1
          Length = 697

 Score = 28.5 bits (62), Expect(2) = 0.058
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +3

Query: 297 SAEAYWQVQILMEQSYSP--ITFVRAFSACVSLRATQEGKEIQADIESN 437
           + EA    Q+++E    P  +T     SAC SL A + G+E+   +  N
Sbjct: 234 AVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKN 282



 Score = 26.9 bits (58), Expect(2) = 0.058
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = +1

Query: 127 VGNYIAPMLEEAESLQDAQVVFEQVGSSNII 219
           +G+ +  M  +  ++ DAQ VF+++G  N++
Sbjct: 189 IGSALVDMYSKCGNVNDAQRVFDEMGDRNVV 219


>sp|Q8G381|DNAE2_BRUSU Error-prone DNA polymerase OS=Brucella suis
           GN=dnaE2 PE=3 SV=1
          Length = 1077

 Score = 33.1 bits (74), Expect = 0.80
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
 Frame = +1

Query: 154 EEAESLQDAQVVFEQVGSSNIIGASLTSSNFN-GTDT*KGRI*ELNCFDQLKHTGKFKF* 330
           EEA  L+ A   F ++G+ + +   +     N G D    R    NCF+Q+K  G++ F 
Sbjct: 684 EEANQLRRAMATFRKMGTIHTMEKKMIDGMVNRGYD----RTFAENCFNQIKGFGEYGFP 739

Query: 331 WNRAILLSHLFVPSALV*AYEP 396
            + A   +HL   SA +  + P
Sbjct: 740 ESHAASFAHLVYISAWLKCHHP 761


>sp|Q8YEK2|DNAE2_BRUME Error-prone DNA polymerase OS=Brucella
           melitensis GN=dnaE2 PE=3 SV=2
          Length = 1077

 Score = 33.1 bits (74), Expect = 0.80
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
 Frame = +1

Query: 154 EEAESLQDAQVVFEQVGSSNIIGASLTSSNFN-GTDT*KGRI*ELNCFDQLKHTGKFKF* 330
           EEA  L+ A   F ++G+ + +   +     N G D    R    NCF+Q+K  G++ F 
Sbjct: 684 EEANQLRRAMATFRKMGTIHTMEKKMIDGMVNRGYD----RTFAENCFNQIKGFGEYGFP 739

Query: 331 WNRAILLSHLFVPSALV*AYEP 396
            + A   +HL   SA +  + P
Sbjct: 740 ESHAASFAHLVYISAWLKCHHP 761


>sp|Q57FU7|DNAE2_BRUAB Error-prone DNA polymerase OS=Brucella
           abortus GN=dnaE2 PE=3 SV=1
          Length = 1077

 Score = 33.1 bits (74), Expect = 0.80
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
 Frame = +1

Query: 154 EEAESLQDAQVVFEQVGSSNIIGASLTSSNFN-GTDT*KGRI*ELNCFDQLKHTGKFKF* 330
           EEA  L+ A   F ++G+ + +   +     N G D    R    NCF+Q+K  G++ F 
Sbjct: 684 EEANQLRRAMATFRKMGTIHTMEKKMIDGMVNRGYD----RTFAENCFNQIKGFGEYGFP 739

Query: 331 WNRAILLSHLFVPSALV*AYEP 396
            + A   +HL   SA +  + P
Sbjct: 740 ESHAASFAHLVYISAWLKCHHP 761


>sp|Q9M2Y7|PP274_ARATH Pentatricopeptide repeat-containing protein
           At3g49710 OS=Arabidopsis thaliana GN=PCMP-H79 PE=2 SV=1
          Length = 721

 Score = 25.4 bits (54), Expect(2) = 2.0
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +1

Query: 100 PKNRVGTQSVGNYIAPMLEEAESLQDAQVVFEQVGSSNII 219
           P NR+   SV N +  +  ++ +LQDA+ VF+++   N +
Sbjct: 377 PSNRI---SVNNALISLYYKSGNLQDARWVFDRMPELNAV 413



 Score = 24.6 bits (52), Expect(2) = 2.0
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +3

Query: 303 EAYWQVQILMEQSYSP--ITFVRAFSACVSLRATQEGKE 413
           EA    Q +++   +P  ITFV   SAC       EG+E
Sbjct: 430 EALLLYQRMLDSGIAPNKITFVAVLSACAHCGKVDEGQE 468


>sp|Q9FLX6|PP430_ARATH Pentatricopeptide repeat-containing protein
           At5g52850, chloroplastic OS=Arabidopsis thaliana
           GN=PCMP-H31 PE=2 SV=1
          Length = 893

 Score = 28.9 bits (63), Expect(2) = 3.3
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +1

Query: 115 GTQSVGNYIAPMLEEAESLQDAQVVFEQVGSSNII 219
           G  SV N +  M  +  SL+DA+ VFE++ + +++
Sbjct: 561 GAASVLNSLVDMYSKCGSLEDAKKVFEEIATPDVV 595



 Score = 20.4 bits (41), Expect(2) = 3.3
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 297 SAEAYWQVQILMEQSYSPITFVRAFSACVSLRATQEGKE 413
           SA + ++   + E     +TF+   SAC + R T  G E
Sbjct: 612 SALSAFEEMRMKETEPDSVTFLILLSACSNGRLTDLGLE 650


>sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic OS=Arabidopsis thaliana
           GN=PCMP-H81 PE=2 SV=2
          Length = 890

 Score = 25.4 bits (54), Expect(2) = 4.2
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +1

Query: 103 KNRVGTQ-SVGNYIAPMLEEAESLQDAQVVFEQVGSSNII 219
           KN + T  +VG+ +  M  +   LQ ++ VF+Q+   N+I
Sbjct: 545 KNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVI 584



 Score = 23.5 bits (49), Expect(2) = 4.2
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +3

Query: 303 EAYWQVQILMEQSYSP--ITFVRAFSACVSLRATQEGKEI 416
           EA   ++++M Q   P  +TF+  F+AC       EG  I
Sbjct: 601 EAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRI 640


>sp|Q9P9L3|SODF_ACIAM Superoxide dismutase [Fe] OS=Acidianus
           ambivalens GN=sod PE=3 SV=1
          Length = 211

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 19/42 (45%), Positives = 26/42 (61%)
 Frame = +3

Query: 117 HAIGWQLHSAYAGRG*KLAGCPSGV*TGWLIKHYWGKFDKFK 242
           H++ WQ + A AG+G    G P GV  G LI+  +G F+KFK
Sbjct: 85  HSLYWQ-NMAPAGKG---GGKPGGV-IGDLIEKQYGSFEKFK 121
tr_hit_id Q5W963
Definition tr|Q5W963|Q5W963_PHYPA PPR1106-17 OS=Physcomitrella patens
Align length 47
Score (bit) 33.1
E-value 0.32
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917082|Adiantum capillus-veneris mRNA, clone:
YMU001_000095_F07.
         (516 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q5W963|Q5W963_PHYPA PPR1106-17 OS=Physcomitrella patens PE=2 ...    33   0.32 
tr|Q2YPR3|Q2YPR3_BRUA2 Immunoglobulin/major histocompatibility c...    33   8.5  
tr|B2S7W9|B2S7W9_BRUA1 DNA polymerase III subunit alpha OS=Bruce...    33   8.5  
tr|A6WV06|A6WV06_OCHA4 DNA polymerase III, alpha subunit OS=Ochr...    33   8.5  

>tr|Q5W963|Q5W963_PHYPA PPR1106-17 OS=Physcomitrella patens PE=2
           SV=2
          Length = 1106

 Score = 33.1 bits (74), Expect(2) = 0.32
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +3

Query: 327 LMEQSYSP--ITFVRAFSACVSLRATQEGKEIQADIESNSSSGDVHL 461
           + EQ   P   +FV   +AC S  A +EGK + A+I      GDV +
Sbjct: 725 MQEQDVVPNKFSFVSLLNACSSFSALEEGKRVHAEIVKRKLQGDVRV 771



 Score = 23.5 bits (49), Expect(2) = 0.32
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +1

Query: 127 VGNYIAPMLEEAESLQDAQVVFEQVGSSNII 219
           VGN +     ++ S+ DA+ VF+++ S +I+
Sbjct: 670 VGNALISAYSKSGSMTDAREVFDKMPSRDIV 700


>tr|Q2YPR3|Q2YPR3_BRUA2 Immunoglobulin/major histocompatibility
           complex:Phosphoesterase PHP, N-terminal:DNA polymerase
           III alpha subunit OS=Brucella abortus (strain 2308)
           GN=BAB1_0066 PE=4 SV=1
          Length = 1077

 Score = 33.1 bits (74), Expect = 8.5
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
 Frame = +1

Query: 154 EEAESLQDAQVVFEQVGSSNIIGASLTSSNFN-GTDT*KGRI*ELNCFDQLKHTGKFKF* 330
           EEA  L+ A   F ++G+ + +   +     N G D    R    NCF+Q+K  G++ F 
Sbjct: 684 EEANQLRRAMATFRKMGTIHTMEKKMIDGMVNRGYD----RTFAENCFNQIKGFGEYGFP 739

Query: 331 WNRAILLSHLFVPSALV*AYEP 396
            + A   +HL   SA +  + P
Sbjct: 740 ESHAASFAHLVYISAWLKCHHP 761


>tr|B2S7W9|B2S7W9_BRUA1 DNA polymerase III subunit alpha OS=Brucella
           abortus (strain S19) GN=BAbS19_I00630 PE=4 SV=1
          Length = 1071

 Score = 33.1 bits (74), Expect = 8.5
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
 Frame = +1

Query: 154 EEAESLQDAQVVFEQVGSSNIIGASLTSSNFN-GTDT*KGRI*ELNCFDQLKHTGKFKF* 330
           EEA  L+ A   F ++G+ + +   +     N G D    R    NCF+Q+K  G++ F 
Sbjct: 678 EEANQLRRAMATFRKMGTIHTMEKKMIDGMVNRGYD----RTFAENCFNQIKGFGEYGFP 733

Query: 331 WNRAILLSHLFVPSALV*AYEP 396
            + A   +HL   SA +  + P
Sbjct: 734 ESHAASFAHLVYISAWLKCHHP 755


>tr|A6WV06|A6WV06_OCHA4 DNA polymerase III, alpha subunit
           OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 /
           NCTC 12168) GN=Oant_0079 PE=4 SV=1
          Length = 1077

 Score = 33.1 bits (74), Expect = 8.5
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
 Frame = +1

Query: 154 EEAESLQDAQVVFEQVGSSNIIGASLTSSNFN-GTDT*KGRI*ELNCFDQLKHTGKFKF* 330
           +EA  L+ A   F ++G+ + +   +     N G D    R    NCF+Q+K  G++ F 
Sbjct: 684 DEANQLRRAMATFRKMGTIHTMETKMIEGMVNRGYD----RTFAENCFNQIKGFGEYGFP 739

Query: 331 WNRAILLSHLFVPSALV*AYEP 396
            + A   +HL   SA +  + P
Sbjct: 740 ESHAASFAHLVYISAWIKCHHP 761