BP917085
Clone id YMU001_000095_F11
Library
Length 176
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000095_F11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
TGTGCACGCTCCAATAACTCTGACAAAGTGTGCGCATCCATGTAACCTGAGGGCGTGGCA
GGAAAAATAACCACTGCCTTGCCTCTGTTGCCATGGAATCCATATAGAGCAACCACTCTT
GAAAACTGGACGTCCTTAAATCCCCGCAGAAAACAGCGGATTTCCTCGTTCTCAAG
■■Homology search results ■■ -
sp_hit_id Q2QWE9
Definition sp|Q2QWE9|SGS3_ORYSJ Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=Oryza sativa subsp. japonica
Align length 41
Score (bit) 32.7
E-value 0.57
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917085|Adiantum capillus-veneris mRNA, clone:
YMU001_000095_F11.
(176 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q2QWE9|SGS3_ORYSJ Protein SUPPRESSOR OF GENE SILENCING 3 homo... 33 0.57
sp|A2ZIW7|SGS3_ORYSI Protein SUPPRESSOR OF GENE SILENCING 3 homo... 33 0.57
sp|A5YVF1|SGS3_SOLLC Protein SUPPRESSOR OF GENE SILENCING 3 OS=S... 32 0.98
sp|A1Y2B7|SGS3_MAIZE Protein SUPPRESSOR OF GENE SILENCING 3 homo... 32 0.98
sp|Q9LDX1|SGS3_ARATH Protein SUPPRESSOR OF GENE SILENCING 3 OS=A... 30 4.9

>sp|Q2QWE9|SGS3_ORYSJ Protein SUPPRESSOR OF GENE SILENCING 3 homolog
OS=Oryza sativa subsp. japonica GN=SGS3 PE=2 SV=1
Length = 609

Score = 32.7 bits (73), Expect = 0.57
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = -1

Query: 140 FKDVQFSRVVALYGFHGNRGKAVVIFPATPSGYMDAHTLSE 18
F + S+ YG +G+RG +V+IF ++ GYM+A L +
Sbjct: 313 FSEYAASKARHAYGPNGHRGMSVLIFDSSAVGYMEAERLHD 353


>sp|A2ZIW7|SGS3_ORYSI Protein SUPPRESSOR OF GENE SILENCING 3 homolog
OS=Oryza sativa subsp. indica GN=SGS3 PE=3 SV=1
Length = 609

Score = 32.7 bits (73), Expect = 0.57
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = -1

Query: 140 FKDVQFSRVVALYGFHGNRGKAVVIFPATPSGYMDAHTLSE 18
F + S+ YG +G+RG +V+IF ++ GYM+A L +
Sbjct: 313 FSEYAASKARHAYGPNGHRGMSVLIFDSSAVGYMEAERLHD 353


>sp|A5YVF1|SGS3_SOLLC Protein SUPPRESSOR OF GENE SILENCING 3
OS=Solanum lycopersicum GN=SGS3 PE=1 SV=1
Length = 633

Score = 32.0 bits (71), Expect = 0.98
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = -1

Query: 104 YGFHGNRGKAVVIFPATPSGYMDAHTLSE 18
YG G+RG +++IF A+ GY++A LSE
Sbjct: 349 YGPQGHRGMSLLIFEASAVGYIEADRLSE 377


>sp|A1Y2B7|SGS3_MAIZE Protein SUPPRESSOR OF GENE SILENCING 3 homolog
OS=Zea mays GN=SGS3 PE=1 SV=1
Length = 594

Score = 32.0 bits (71), Expect = 0.98
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = -1

Query: 140 FKDVQFSRVVALYGFHGNRGKAVVIFPATPSGYMDAHTL 24
F + + S+ YG G+RG +V+IF ++ GYM+A L
Sbjct: 302 FGEYEASKARHAYGPSGHRGMSVLIFESSAVGYMEAERL 340


>sp|Q9LDX1|SGS3_ARATH Protein SUPPRESSOR OF GENE SILENCING 3
OS=Arabidopsis thaliana GN=SGS3 PE=1 SV=1
Length = 625

Score = 29.6 bits (65), Expect = 4.9
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = -1

Query: 170 NEEIRCFLRGFKDVQFSRVVALYGFHGNRGKAVVIFPATPSGYMDAHTL 24
N+E+ L F + R YG G+RG +V++F ++ +GY++A L
Sbjct: 327 NQEL---LEYFDKYEALRARHSYGPQGHRGMSVLMFESSATGYLEAERL 372


tr_hit_id Q19PN0
Definition tr|Q19PN0|Q19PN0_POPTR TIR-NBS-LRR-TIR type disease resistance protein (Fragment) OS=Populus trichocarpa
Align length 56
Score (bit) 36.6
E-value 0.63
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917085|Adiantum capillus-veneris mRNA, clone:
YMU001_000095_F11.
(176 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q19PN0|Q19PN0_POPTR TIR-NBS-LRR-TIR type disease resistance p... 37 0.63
tr|Q19PM1|Q19PM1_POPTR NBS type disease resistance protein (Frag... 35 2.4
tr|Q19PP1|Q19PP1_POPTR NBS-LRR-TIR type disease resistance prote... 34 4.1
tr|Q19PP0|Q19PP0_POPTR TIR-NBS-LRR type disease resistance prote... 34 4.1
tr|Q19PL8|Q19PL8_POPTR TIR-NBS-LRR-TIR type disease resistance p... 34 4.1
tr|A9T5P8|A9T5P8_PHYPA Suppressor of silencing OS=Physcomitrella... 34 4.1
tr|Q7UK42|Q7UK42_RHOBA Excinuclease ABC subunit A OS=Rhodopirell... 33 5.4
tr|B0SU06|B0SU06_LEPBP Ubiquinone/menaquinone biosynthesis methy... 33 7.0
tr|B0SIE0|B0SIE0_LEPBA Methylase involved in ubiquinone/menaquin... 33 7.0
tr|Q19PN4|Q19PN4_POPTR TIR-NBS-LRR-TIR type disease resistance p... 33 7.0
tr|Q19PM3|Q19PM3_POPTR TIR-NBS-TIR type disease resistance prote... 33 7.0
tr|Q19PM0|Q19PM0_POPTR TIR-NBS-LRR-TIR type disease resistance p... 33 7.0
tr|Q19PL2|Q19PL2_POPTR TIR-NBS-LRR-TIR type disease resistance p... 33 7.0
tr|Q19PL9|Q19PL9_POPTR TIR-NBS-LRR-TIR type disease resistance p... 33 9.1
tr|Q0ZCC6|Q0ZCC6_POPTR NBS-LRR type disease resistance-like prot... 33 9.1

>tr|Q19PN0|Q19PN0_POPTR TIR-NBS-LRR-TIR type disease resistance
protein (Fragment) OS=Populus trichocarpa PE=2 SV=1
Length = 1336

Score = 36.6 bits (83), Expect = 0.63
Identities = 20/56 (35%), Positives = 32/56 (57%)
Frame = -1

Query: 176 LENEEIRCFLRGFKDVQFSRVVALYGFHGNRGKAVVIFPATPSGYMDAHTLSELLE 9
LE +I CFL+GF+ + R++ GFH + G V+I + S Y D + +LL+
Sbjct: 369 LEVIDIACFLKGFEKDRIIRILDSCGFHAHIGTQVLIERSLISVYRDQVWMHDLLQ 424


>tr|Q19PM1|Q19PM1_POPTR NBS type disease resistance protein
(Fragment) OS=Populus trichocarpa PE=2 SV=1
Length = 481

Score = 34.7 bits (78), Expect = 2.4
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = -1

Query: 164 EIRCFLRGFKDVQFSRVVALYGFHGNRGKAVVIFPATPSGYMDAHTLSELLE 9
+I CFL+GFK + +R++ GFH G V+I + S D + +LL+
Sbjct: 363 DIACFLKGFKTDRITRILDSRGFHAGIGIPVLIEKSLMSVSQDQVWMHDLLQ 414


>tr|Q19PP1|Q19PP1_POPTR NBS-LRR-TIR type disease resistance protein
(Fragment) OS=Populus trichocarpa PE=2 SV=1
Length = 925

Score = 33.9 bits (76), Expect = 4.1
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = -1

Query: 164 EIRCFLRGFKDVQFSRVVALYGFHGNRGKAVVIFPATPSGYMDAHTLSELLE 9
+I CFL+GFK + +R++ GFH G V+I + S D + +LL+
Sbjct: 279 DIACFLKGFKKDRITRILESRGFHAGIGIPVLIERSLISVSRDQVWMHDLLQ 330


>tr|Q19PP0|Q19PP0_POPTR TIR-NBS-LRR type disease resistance protein
OS=Populus trichocarpa PE=2 SV=1
Length = 1867

Score = 33.9 bits (76), Expect = 4.1
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = -1

Query: 164 EIRCFLRGFKDVQFSRVVALYGFHGNRGKAVVIFPATPSGYMDAHTLSELLE 9
+I CFL+GFK + +R++ GFH G V+I + S D + +LL+
Sbjct: 1264 DIACFLKGFKKDRITRILESRGFHAGIGIPVLIERSLISVSRDQVWMHDLLQ 1315


>tr|Q19PL8|Q19PL8_POPTR TIR-NBS-LRR-TIR type disease resistance
protein OS=Populus trichocarpa PE=2 SV=1
Length = 1178

Score = 33.9 bits (76), Expect = 4.1
Identities = 18/52 (34%), Positives = 30/52 (57%)
Frame = -1

Query: 164 EIRCFLRGFKDVQFSRVVALYGFHGNRGKAVVIFPATPSGYMDAHTLSELLE 9
+I CFL+GFK + +R++ GF+ + G V+I + S Y D + LL+
Sbjct: 580 DIACFLKGFKKDRITRILDRCGFNASIGIPVLIERSLISVYRDQVWMHNLLQ 631


>tr|A9T5P8|A9T5P8_PHYPA Suppressor of silencing OS=Physcomitrella
patens subsp. patens GN=SGS1501 PE=4 SV=1
Length = 725

Score = 33.9 bits (76), Expect = 4.1
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = -1

Query: 140 FKDVQFSRVVALYGFHGNRGKAVVIFPATPSGYMDAHTLS 21
FKD + YG G+RG +++IFP +P GY DA L+
Sbjct: 433 FKDYNPLKPRHAYGPQGHRGMSLLIFPDSPIGYHDAVRLA 472


>tr|Q7UK42|Q7UK42_RHOBA Excinuclease ABC subunit A OS=Rhodopirellula
baltica GN=uvrA PE=3 SV=1
Length = 839

Score = 33.5 bits (75), Expect = 5.4
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = -2

Query: 106 YMDSMATEARQWLFFLPRPQVTWM 35
Y+DS++T ARQ+L +PRP V W+
Sbjct: 59 YIDSLSTYARQYLDAIPRPDVDWI 82


>tr|B0SU06|B0SU06_LEPBP Ubiquinone/menaquinone biosynthesis
methyltransferase OS=Leptospira biflexa serovar Patoc
(strain Patoc 1 / ATCC 23582 / Paris) GN=ubiE PE=4 SV=1
Length = 246

Score = 33.1 bits (74), Expect = 7.0
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = -1

Query: 152 FLRGFKDVQFSRVVALYGF--HGNRGKAVVIFPATPSGYMDAHTLSELL 12
FL+ F DV F ++V L+G+ +G + + P + Y D TL+++L
Sbjct: 171 FLKFFADVYFFQIVPLFGYLLYGKQNEMFDYLPHSSKSYPDQETLAQIL 219


>tr|B0SIE0|B0SIE0_LEPBA Methylase involved in ubiquinone/menaquinone
biosynthesis OS=Leptospira biflexa serovar Patoc (strain
Patoc 1 / Ames) GN=ubiE PE=4 SV=1
Length = 243

Score = 33.1 bits (74), Expect = 7.0
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = -1

Query: 152 FLRGFKDVQFSRVVALYGF--HGNRGKAVVIFPATPSGYMDAHTLSELL 12
FL+ F DV F ++V L+G+ +G + + P + Y D TL+++L
Sbjct: 168 FLKFFADVYFFQIVPLFGYLLYGKQNEMFDYLPHSSKSYPDQETLAQIL 216


>tr|Q19PN4|Q19PN4_POPTR TIR-NBS-LRR-TIR type disease resistance
protein (Fragment) OS=Populus trichocarpa PE=2 SV=1
Length = 1359

Score = 33.1 bits (74), Expect = 7.0
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = -1

Query: 164 EIRCFLRGFKDVQFSRVVALYGFHGNRGKAVVIFPATPSGYMDAHTLSELLE 9
+I CFL+GFK + R++ GFH + G V+I + S D + LL+
Sbjct: 767 DIACFLKGFKKDRIIRILDSCGFHAHIGTQVLIEKSLISVSRDQVWMHNLLQ 818