NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917090
Clone id YMU001_000095_G05
Library
Length 482
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000095_G05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GCTTTCCACGATGACCTGAATTCTGGATACCGCGTCTGGGAGTGGCATGGCCACATCCTC
ATGTACGATGATGAGAATGGCTATGTCCCAGAGTATGTGTATGGGAACTTCTTCCAGCCT
TTGCCCAAGAACAGCAATGGGCTTTCAAATGTTGTGAATGGCATTGGGCTCTCTGGTACA
ATCATGAGCAATGAGAAGGAAGAATCCGTCGTTCACCGGACTGGAACAAAGTAAGTGGCA
TCTTGATTCAGCTATATTGGGTCAAAATGAGATATGTTTGCTGTCTGTAGACAGACCCTC
ATCGCTTCTCATGTAAAAGATGTTGTCTGCTTGGTAGCTGCGGTGGTGTGTGTTTGTGTA
CGTCGTGATGCAGACAACCACTCCCAAGTATCACGCTTGGAGGTGGTTTTGCCCATGAAA
ACCCACAATCCTGTAAATTCCTTTAGGGATGATGTATTAGACAATGTCCTTGAAGCAAAA
AA
■■Homology search results ■■ -
sp_hit_id P06864
Definition sp|P06864|BGA2_ECOLI Evolved beta-galactosidase subunit alpha OS=Escherichia coli (strain K12)
Align length 45
Score (bit) 31.2
E-value 2.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917090|Adiantum capillus-veneris mRNA, clone:
YMU001_000095_G05.
         (482 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P06864|BGA2_ECOLI Evolved beta-galactosidase subunit alpha OS...    31   2.6  
sp|B1J499|RIMN_PSEPW Putative ribosome maturation factor rimN OS...    30   4.4  
sp|A5VWK1|RIMN_PSEP1 Putative ribosome maturation factor rimN OS...    30   4.4  
sp|Q9NFH9|HCYB_EURCA Hemocyanin B chain OS=Eurypelma californica...    30   5.7  
sp|B0KF32|RIMN_PSEPG Putative ribosome maturation factor rimN OS...    30   7.5  
sp|Q9LVD2|C71BA_ARATH Cytochrome P450 71B10 OS=Arabidopsis thali...    30   7.5  
sp|Q98DY3|AROE_RHILO Shikimate dehydrogenase OS=Rhizobium loti G...    30   7.5  
sp|P72623|GLGA2_SYNY3 Probable glycogen synthase 2 OS=Synechocys...    29   9.8  
sp|Q8VHU4|ELP1_RAT Elongator complex protein 1 OS=Rattus norvegi...    29   9.8  
sp|Q8PPG9|CCA_XANAC Multifunctional CCA protein OS=Xanthomonas a...    29   9.8  
sp|Q9FXG8|BLH10_ARATH BEL1-like homeodomain protein 10 OS=Arabid...    29   9.8  

>sp|P06864|BGA2_ECOLI Evolved beta-galactosidase subunit alpha
           OS=Escherichia coli (strain K12) GN=ebgA PE=1 SV=4
          Length = 1030

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +1

Query: 4   FHDDLNSGYRVWEWHGHILMYDDENGYVPEYVYGNFFQPLPKNSN 138
           +  D   G+ VWEW  H +   D++G V  Y +G  +   P N N
Sbjct: 532 YKHDCIQGHYVWEWCDHGIQAQDDHGNV-WYKFGGDYGDYPNNYN 575


>sp|B1J499|RIMN_PSEPW Putative ribosome maturation factor rimN
           OS=Pseudomonas putida (strain W619) GN=rimN PE=3 SV=1
          Length = 185

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +3

Query: 15  PEFWIPRLGVAWPHPHVR**EWLCPRVCVWELLPAFAQEQ 134
           PE WI R+G  WP P+     WL P     +LLP +   Q
Sbjct: 73  PEDWIDRMGSTWPGPNT----WLVPH---QDLLPEWVTGQ 105


>sp|A5VWK1|RIMN_PSEP1 Putative ribosome maturation factor rimN
           OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=rimN
           PE=3 SV=1
          Length = 185

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +3

Query: 15  PEFWIPRLGVAWPHPHVR**EWLCPRVCVWELLPAFAQEQ 134
           PE WI R+G  WP P+     WL P     +LLP +   Q
Sbjct: 73  PEDWIDRMGSTWPGPNT----WLVPH---QDLLPEWVTGQ 105


>sp|Q9NFH9|HCYB_EURCA Hemocyanin B chain OS=Eurypelma californica
           GN=HCB PE=2 SV=3
          Length = 627

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
 Frame = +1

Query: 64  YDDE---NGYVPEYVYGNFFQPLPKNSNGLSNVVNGIGLS----GTIMSNEKEESV 210
           YD E   NG  P   + NF +P+   S+ LS+ +NG+  +    G I+ + +E SV
Sbjct: 211 YDSERLSNGMAPMVPFHNFHEPMEGYSSHLSSGINGMPYAFRPHGRILKDMREVSV 266


>sp|B0KF32|RIMN_PSEPG Putative ribosome maturation factor rimN
           OS=Pseudomonas putida (strain GB-1) GN=rimN PE=3 SV=1
          Length = 185

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +3

Query: 15  PEFWIPRLGVAWPHPHVR**EWLCPRVCVWELLP 116
           PE WI R+G  WP P+     WL P     +LLP
Sbjct: 73  PEDWIERMGSTWPGPNT----WLVPH---QDLLP 99


>sp|Q9LVD2|C71BA_ARATH Cytochrome P450 71B10 OS=Arabidopsis thaliana
           GN=CYP71B10 PE=3 SV=1
          Length = 502

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
 Frame = +1

Query: 121 LPKNSNGLSNVVNGIGLSGTIMSNEKEESVVHRT----GTK*VAS*FSYIGSK*DMF 279
           L  N N +   V G+   GT+++N+K + +VH      G+   +  F Y+G   D F
Sbjct: 174 LSLNVNVICKAVFGVNFQGTVLNNDKFQDLVHEALEMLGSFSASDFFPYVGWIVDWF 230


>sp|Q98DY3|AROE_RHILO Shikimate dehydrogenase OS=Rhizobium loti
           GN=aroE PE=3 SV=1
          Length = 280

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 439 NLQDCGFSWAKPPPSVILGSG 377
           NL DC   WA   P+V+LG+G
Sbjct: 112 NLDDCAPGWANTGPAVVLGAG 132


>sp|P72623|GLGA2_SYNY3 Probable glycogen synthase 2 OS=Synechocystis
           sp. (strain PCC 6803) GN=glgA2 PE=1 SV=1
          Length = 491

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 19/63 (30%), Positives = 30/63 (47%)
 Frame = -3

Query: 453 IIPKGIYRIVGFHGQNHLQA*YLGVVVCITTYTNTHHRSYQADNIFYMRSDEGLSTDSKH 274
           ++P  +Y I  FHG +H +       VC T + N  H+     NI +     GL+ DS +
Sbjct: 142 LVPVLLYEIYRFHGMDHQR-------VCYTIH-NFKHQGIAGANILHA---TGLNNDSYY 190

Query: 273 ISF 265
            S+
Sbjct: 191 FSY 193


>sp|Q8VHU4|ELP1_RAT Elongator complex protein 1 OS=Rattus norvegicus
           GN=Ikbkap PE=2 SV=1
          Length = 1331

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 132 QQWAFKCCEWHW 167
           Q W + CC+WHW
Sbjct: 364 QGWRYLCCDWHW 375


>sp|Q8PPG9|CCA_XANAC Multifunctional CCA protein OS=Xanthomonas
           axonopodis pv. citri GN=cca PE=3 SV=1
          Length = 410

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 403 PPSVILGSGCLHHDVHKHTPPQLPSRQHLLHEKR 302
           P   ++G   L HD+ K   PQ    +H++HE+R
Sbjct: 245 PGDALVGFAALTHDLGKALTPQAQWPRHVMHEQR 278
tr_hit_id Q9LFF8
Definition tr|Q9LFF8|Q9LFF8_ARATH Putative uncharacterized protein F4P12_330 OS=Arabidopsis thaliana
Align length 41
Score (bit) 78.2
E-value 2.0e-13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917090|Adiantum capillus-veneris mRNA, clone:
YMU001_000095_G05.
         (482 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9LFF8|Q9LFF8_ARATH Putative uncharacterized protein F4P12_33...    78   2e-13
tr|Q8VXU5|Q8VXU5_ARATH AT3g53630/F4P12_330 OS=Arabidopsis thalia...    78   2e-13
tr|A9NN12|A9NN12_PICSI Putative uncharacterized protein OS=Picea...    77   3e-13
tr|B6UB08|B6UB08_MAIZE Putative uncharacterized protein OS=Zea m...    73   8e-12
tr|A9SKZ1|A9SKZ1_PHYPA Predicted protein (Fragment) OS=Physcomit...    73   8e-12
tr|A9TGD9|A9TGD9_PHYPA Predicted protein (Fragment) OS=Physcomit...    72   1e-11
tr|A9PAG3|A9PAG3_POPTR Putative uncharacterized protein OS=Popul...    72   1e-11
tr|Q10N76|Q10N76_ORYSJ Os03g0279600 protein OS=Oryza sativa subs...    72   1e-11
tr|B8AL34|B8AL34_ORYSI Putative uncharacterized protein OS=Oryza...    72   1e-11
tr|A3AGM9|A3AGM9_ORYSJ Putative uncharacterized protein OS=Oryza...    72   1e-11
tr|A9P034|A9P034_PICSI Putative uncharacterized protein OS=Picea...    64   3e-09
tr|A9NP94|A9NP94_PICSI Putative uncharacterized protein OS=Picea...    64   3e-09
tr|A9T9V9|A9T9V9_PHYPA Predicted protein OS=Physcomitrella paten...    64   4e-09
tr|A5C253|A5C253_VITVI Putative uncharacterized protein OS=Vitis...    61   3e-08
tr|Q2BYY3|Q2BYY3_9GAMM Evolved beta-D-galactosidase, alpha subun...    35   1.8  
tr|A0KER7|A0KER7_AERHH Evolved beta-galactosidase alpha-subunit ...    34   4.1  
tr|A8T6U0|A8T6U0_9VIBR Cryptic beta-D-galactosidase, alpha subun...    34   4.1  
tr|A6ARN0|A6ARN0_VIBHA Evolved beta-galactosidase subunit alpha ...    34   4.1  
tr|Q7R920|Q7R920_PLAYO Putative uncharacterized protein PY07050 ...    34   4.1  
tr|Q1ZTV2|Q1ZTV2_9VIBR Evolved beta-D-galactosidase, alpha subun...    33   5.4  
tr|Q8XAM9|Q8XAM9_ECO57 Evolved beta-D-galactosidase, alpha subun...    33   7.0  
tr|Q8FDF0|Q8FDF0_ECOL6 Evolved beta-galactosidase alpha-subunit ...    33   7.0  
tr|Q5E0M9|Q5E0M9_VIBF1 Evolved beta-D-galactosidase, alpha subun...    33   7.0  
tr|Q1R6Q2|Q1R6Q2_ECOUT Evolved beta-galactosidase alpha-subunit ...    33   7.0  
tr|Q0TD30|Q0TD30_ECOL5 Evolved beta-galactosidase alpha-subunit ...    33   7.0  
tr|B6I448|B6I448_ECOSE Evolved beta-D-galactosidase alpha subuni...    33   7.0  
tr|B5YRB6|B5YRB6_ECO5E Beta-galactosidase, subunit alpha OS=Esch...    33   7.0  
tr|B5ETC2|B5ETC2_VIBFM Evolved beta-galactosidase subunit alpha ...    33   7.0  
tr|B1LF68|B1LF68_ECOSM Beta-galactosidase, subunit alpha OS=Esch...    33   7.0  
tr|B1IRP1|B1IRP1_ECOLC Glycoside hydrolase family 2 TIM barrel O...    33   7.0  

>tr|Q9LFF8|Q9LFF8_ARATH Putative uncharacterized protein F4P12_330
           OS=Arabidopsis thaliana GN=F4P12_330 PE=4 SV=1
          Length = 210

 Score = 78.2 bits (191), Expect = 2e-13
 Identities = 28/41 (68%), Positives = 36/41 (87%)
 Frame = +1

Query: 4   FHDDLNSGYRVWEWHGHILMYDDENGYVPEYVYGNFFQPLP 126
           FH+D  S YRVWEWHGHI+++D+ENGY PEY+YGN+F+ LP
Sbjct: 100 FHEDEESDYRVWEWHGHIMLFDEENGYTPEYIYGNYFERLP 140


>tr|Q8VXU5|Q8VXU5_ARATH AT3g53630/F4P12_330 OS=Arabidopsis thaliana
           GN=At3g53630 PE=2 SV=1
          Length = 194

 Score = 78.2 bits (191), Expect = 2e-13
 Identities = 28/41 (68%), Positives = 36/41 (87%)
 Frame = +1

Query: 4   FHDDLNSGYRVWEWHGHILMYDDENGYVPEYVYGNFFQPLP 126
           FH+D  S YRVWEWHGHI+++D+ENGY PEY+YGN+F+ LP
Sbjct: 100 FHEDEESDYRVWEWHGHIMLFDEENGYTPEYIYGNYFERLP 140


>tr|A9NN12|A9NN12_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 185

 Score = 77.4 bits (189), Expect = 3e-13
 Identities = 34/71 (47%), Positives = 41/71 (57%), Gaps = 11/71 (15%)
 Frame = +1

Query: 4   FHDDLNSGYRVWEWHGHILMYDDENGYVPEYVYGNFFQ-----------PLPKNSNGLSN 150
           FH+D   GYRVWEWHGHI++YD+E GY  EY+YGNFF+           P  KN N    
Sbjct: 94  FHEDSEPGYRVWEWHGHIMLYDEEKGYTAEYIYGNFFEKATEIKRRAAKPQEKNDNENEG 153

Query: 151 VVNGIGLSGTI 183
               +GL G I
Sbjct: 154 SGGSVGLGGLI 164


>tr|B6UB08|B6UB08_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 267

 Score = 72.8 bits (177), Expect = 8e-12
 Identities = 25/40 (62%), Positives = 33/40 (82%)
 Frame = +1

Query: 4   FHDDLNSGYRVWEWHGHILMYDDENGYVPEYVYGNFFQPL 123
           FHDD +  YR+WEWHGH++++DDE GY  EY+YGN F+PL
Sbjct: 164 FHDDASGEYRIWEWHGHVMLFDDEEGYSAEYIYGNHFEPL 203


>tr|A9SKZ1|A9SKZ1_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_18627 PE=4 SV=1
          Length = 80

 Score = 72.8 bits (177), Expect = 8e-12
 Identities = 25/41 (60%), Positives = 35/41 (85%)
 Frame = +1

Query: 1   AFHDDLNSGYRVWEWHGHILMYDDENGYVPEYVYGNFFQPL 123
           ++ ++  SGYR WEWHGH+++Y+D  GYVPEYVYGN+F+PL
Sbjct: 40  SYQEEQGSGYRTWEWHGHVMVYEDGEGYVPEYVYGNYFEPL 80


>tr|A9TGD9|A9TGD9_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_8183 PE=4 SV=1
          Length = 86

 Score = 72.4 bits (176), Expect = 1e-11
 Identities = 25/41 (60%), Positives = 35/41 (85%)
 Frame = +1

Query: 1   AFHDDLNSGYRVWEWHGHILMYDDENGYVPEYVYGNFFQPL 123
           ++ ++  SGYR WEWHGH+++Y+D  GYVPEYVYGN+F+PL
Sbjct: 46  SYQEEPGSGYRTWEWHGHVMVYEDGEGYVPEYVYGNYFEPL 86


>tr|A9PAG3|A9PAG3_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 201

 Score = 72.4 bits (176), Expect = 1e-11
 Identities = 25/40 (62%), Positives = 35/40 (87%)
 Frame = +1

Query: 4   FHDDLNSGYRVWEWHGHILMYDDENGYVPEYVYGNFFQPL 123
           FH++  S YRVWEWHGHI+++D+E+GY PEY+YGN+F+ L
Sbjct: 100 FHEEQGSDYRVWEWHGHIMLFDEEDGYTPEYIYGNYFERL 139


>tr|Q10N76|Q10N76_ORYSJ Os03g0279600 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0279600 PE=2 SV=1
          Length = 247

 Score = 72.0 bits (175), Expect = 1e-11
 Identities = 26/40 (65%), Positives = 33/40 (82%)
 Frame = +1

Query: 4   FHDDLNSGYRVWEWHGHILMYDDENGYVPEYVYGNFFQPL 123
           FHDD    YRVWEWHGH++++DDE+GY  EY+YGN F+PL
Sbjct: 145 FHDDSGGVYRVWEWHGHVMIFDDEDGYSAEYIYGNHFEPL 184


>tr|B8AL34|B8AL34_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_11010 PE=4 SV=1
          Length = 597

 Score = 72.0 bits (175), Expect = 1e-11
 Identities = 26/40 (65%), Positives = 33/40 (82%)
 Frame = +1

Query: 4   FHDDLNSGYRVWEWHGHILMYDDENGYVPEYVYGNFFQPL 123
           FHDD    YRVWEWHGH++++DDE+GY  EY+YGN F+PL
Sbjct: 145 FHDDSGGVYRVWEWHGHVMIFDDEDGYSAEYIYGNHFEPL 184


>tr|A3AGM9|A3AGM9_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_009951 PE=4 SV=1
          Length = 249

 Score = 72.0 bits (175), Expect = 1e-11
 Identities = 26/40 (65%), Positives = 33/40 (82%)
 Frame = +1

Query: 4   FHDDLNSGYRVWEWHGHILMYDDENGYVPEYVYGNFFQPL 123
           FHDD    YRVWEWHGH++++DDE+GY  EY+YGN F+PL
Sbjct: 145 FHDDSGGVYRVWEWHGHVMIFDDEDGYSAEYIYGNHFEPL 184