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NBDC - LSDB Archive
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BP917114
Clone id YMU001_000096_B08
Library
Length 180
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000096_B08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CGATCGAATGCGAAATTGCTCATATGAAGAAGCACTTGTATCACTCGAATTCATGCCCTA
TAGGGCATGTTACCCAGTATCACAGCTGGTTCTTTCCGCAGCTGCAAATGCAAGTAATAA
TCTTGGACTGAATAAATCCGATTTGTTTGTCAGTAAAGCTTGGGTAGATAACTCCAAATA
■■Homology search results ■■ -
sp_hit_id Q85FI3
Definition sp|Q85FI3|RK22_ADICA 50S ribosomal protein L22, chloroplastic OS=Adiantum capillus-veneris
Align length 59
Score (bit) 74.7
E-value 1.0e-13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917114|Adiantum capillus-veneris mRNA, clone:
YMU001_000096_B08.
         (180 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q85FI3|RK22_ADICA 50S ribosomal protein L22, chloroplastic OS...    75   1e-13
sp|Q6EW12|RK22_NYMAL 50S ribosomal protein L22, chloroplastic OS...    51   2e-06
sp|A1XFZ5|RK22_NUPAD 50S ribosomal protein L22, chloroplastic OS...    51   2e-06
sp|Q32RV5|RK22_STAPU 50S ribosomal protein L22, chloroplastic OS...    48   1e-05
sp|A6H5M1|RK22_CYCTA 50S ribosomal protein L22, chloroplastic OS...    47   2e-05
sp|Q1ACF8|RK22_CHAVU 50S ribosomal protein L22, chloroplastic OS...    47   2e-05
sp|Q70XX1|RK22_AMBTC 50S ribosomal protein L22, chloroplastic OS...    47   3e-05
sp|Q8WHY3|RK22_PSINU 50S ribosomal protein L22, chloroplastic OS...    46   5e-05
sp|Q09G06|RK22_PLAOC 50S ribosomal protein L22, chloroplastic OS...    45   1e-04
sp|Q3BAJ7|RK22_PHAAO 50S ribosomal protein L22, chloroplastic OS...    45   1e-04
sp|Q5SD20|RK22_HUPLU 50S ribosomal protein L22, chloroplastic OS...    45   1e-04
sp|B0C1D8|RL22_ACAM1 50S ribosomal protein L22 OS=Acaryochloris ...    45   1e-04
sp|P51309|RK22_PORPU 50S ribosomal protein L22, chloroplastic OS...    44   2e-04
sp|Q6YXK7|RK22_PHYPA 50S ribosomal protein L22, chloroplastic OS...    44   2e-04
sp|A6MM76|RK22_BUXMI 50S ribosomal protein L22, chloroplastic OS...    44   2e-04
sp|P73315|RL22_SYNY3 50S ribosomal protein L22 OS=Synechocystis ...    44   2e-04
sp|Q4VZM9|RK22_CUCSA 50S ribosomal protein L22, chloroplastic OS...    44   2e-04
sp|A0A375|RK22_COFAR 50S ribosomal protein L22, chloroplastic OS...    44   2e-04
sp|B2LMN3|RK22_GUIAB 50S ribosomal protein L22, chloroplastic OS...    44   3e-04
sp|A7M935|RK22_CUSGR 50S ribosomal protein L22, plastid OS=Cuscu...    44   3e-04
sp|Q110B2|RL22_TRIEI 50S ribosomal protein L22 OS=Trichodesmium ...    43   4e-04
sp|B1NWI9|RK22_MANES 50S ribosomal protein L22, chloroplastic OS...    43   4e-04
sp|A8W3M1|RK22_CUSOB 50S ribosomal protein L22, plastid OS=Cuscu...    43   4e-04
sp|A2T373|RK22_ANGEV 50S ribosomal protein L22, chloroplastic OS...    43   4e-04
sp|Q2VEE1|RK22_SOLTU 50S ribosomal protein L22, chloroplastic OS...    43   6e-04
sp|Q2MI61|RK22_SOLLC 50S ribosomal protein L22, chloroplastic OS...    43   6e-04
sp|Q2MIE8|RK22_SOLBU 50S ribosomal protein L22, chloroplastic OS...    43   6e-04
sp|P24283|RK22_PELHO 50S ribosomal protein L22, chloroplastic OS...    43   6e-04
sp|Q85UK6|RK22_OROMI 50S ribosomal protein L22, plastid OS=Oroba...    43   6e-04
sp|A4QJX0|RK22_OLIPU 50S ribosomal protein L22, chloroplastic OS...    43   6e-04

>sp|Q85FI3|RK22_ADICA 50S ribosomal protein L22, chloroplastic
           OS=Adiantum capillus-veneris GN=rpl22 PE=2 SV=2
          Length = 122

 Score = 74.7 bits (182), Expect = 1e-13
 Identities = 37/59 (62%), Positives = 38/59 (64%)
 Frame = +2

Query: 2   DRMRNCSYEEALVSLEFMPYRACYPVXXXXXXXXXXXXXXXXXXXXDLFVSKAWVDNSK 178
           DR+RNCSYEEALV LEFMPYRACYPV                    DLFVSKAWVDNSK
Sbjct: 30  DRIRNCSYEEALVLLEFMPYRACYPVSQLVLSAAANASNNLGLNKSDLFVSKAWVDNSK 88


>sp|Q6EW12|RK22_NYMAL 50S ribosomal protein L22, chloroplastic
           OS=Nymphaea alba GN=rpl22 PE=3 SV=1
          Length = 125

 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 24/56 (42%), Positives = 31/56 (55%)
 Frame = +2

Query: 2   DRMRNCSYEEALVSLEFMPYRACYPVXXXXXXXXXXXXXXXXXXXXDLFVSKAWVD 169
           D++R CSYE+ L+ LE MPYRACYP+                    DLF+SKA V+
Sbjct: 29  DQIRGCSYEQTLMILELMPYRACYPIFKLVYSAAANASHNRGLKEADLFISKAEVN 84


>sp|A1XFZ5|RK22_NUPAD 50S ribosomal protein L22, chloroplastic
           OS=Nuphar advena GN=rpl22 PE=3 SV=1
          Length = 125

 Score = 50.8 bits (120), Expect = 2e-06
 Identities = 24/56 (42%), Positives = 31/56 (55%)
 Frame = +2

Query: 2   DRMRNCSYEEALVSLEFMPYRACYPVXXXXXXXXXXXXXXXXXXXXDLFVSKAWVD 169
           D++R CSYE+ L+ LE MPYRACYP+                    DLF+SKA V+
Sbjct: 29  DQIRGCSYEQTLMILELMPYRACYPIFKLVYSAAANASHNRGLKEADLFISKAEVN 84


>sp|Q32RV5|RK22_STAPU 50S ribosomal protein L22, chloroplastic
           OS=Staurastrum punctulatum GN=rpl22 PE=3 SV=1
          Length = 132

 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 24/56 (42%), Positives = 30/56 (53%)
 Frame = +2

Query: 2   DRMRNCSYEEALVSLEFMPYRACYPVXXXXXXXXXXXXXXXXXXXXDLFVSKAWVD 169
           D++R  SYEEAL+ LEFMPYRACYP+                    +L +SK  VD
Sbjct: 38  DQIRGRSYEEALMLLEFMPYRACYPILQTVCSAAANANHNLGLSKANLIISKVMVD 93


>sp|A6H5M1|RK22_CYCTA 50S ribosomal protein L22, chloroplastic
           OS=Cycas taitungensis GN=rpl22 PE=3 SV=1
          Length = 139

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 24/56 (42%), Positives = 32/56 (57%)
 Frame = +2

Query: 2   DRMRNCSYEEALVSLEFMPYRACYPVXXXXXXXXXXXXXXXXXXXXDLFVSKAWVD 169
           D++RN SYE+AL+ LE MPYRACYP+                    +LFVS+A V+
Sbjct: 29  DQVRNRSYEQALMILELMPYRACYPILQLISSAAANANHNIGLNKANLFVSRAEVN 84


>sp|Q1ACF8|RK22_CHAVU 50S ribosomal protein L22, chloroplastic
           OS=Chara vulgaris GN=rpl22 PE=3 SV=1
          Length = 123

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 23/56 (41%), Positives = 32/56 (57%)
 Frame = +2

Query: 2   DRMRNCSYEEALVSLEFMPYRACYPVXXXXXXXXXXXXXXXXXXXXDLFVSKAWVD 169
           +++R CSYE+AL+ LEFMPYRAC P+                    +LF+S+A VD
Sbjct: 31  NQIRGCSYEKALMILEFMPYRACKPITQLISSAASNANHNLGLKKKNLFISEAKVD 86


>sp|Q70XX1|RK22_AMBTC 50S ribosomal protein L22, chloroplastic
           OS=Amborella trichopoda GN=rpl22 PE=3 SV=1
          Length = 124

 Score = 47.0 bits (110), Expect = 3e-05
 Identities = 23/55 (41%), Positives = 28/55 (50%)
 Frame = +2

Query: 2   DRMRNCSYEEALVSLEFMPYRACYPVXXXXXXXXXXXXXXXXXXXXDLFVSKAWV 166
           D++R CSYE+ L+ LE MPYR CYPV                    D F+SKA V
Sbjct: 29  DQIRGCSYEQTLMILELMPYRVCYPVFKLVYSAAANASHNMGLNEADSFISKAEV 83


>sp|Q8WHY3|RK22_PSINU 50S ribosomal protein L22, chloroplastic
           OS=Psilotum nudum GN=rpl22 PE=3 SV=1
          Length = 116

 Score = 46.2 bits (108), Expect = 5e-05
 Identities = 23/58 (39%), Positives = 32/58 (55%)
 Frame = +2

Query: 2   DRMRNCSYEEALVSLEFMPYRACYPVXXXXXXXXXXXXXXXXXXXXDLFVSKAWVDNS 175
           +++R  SYEEAL+SLEF+PYRACYP+                     L +S+A VD +
Sbjct: 26  NQIRGRSYEEALISLEFLPYRACYPLLQLVSSAAANANNNLGLKKDTLLISEAKVDEA 83


>sp|Q09G06|RK22_PLAOC 50S ribosomal protein L22, chloroplastic
           OS=Platanus occidentalis GN=rpl22 PE=3 SV=1
          Length = 154

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 23/56 (41%), Positives = 29/56 (51%)
 Frame = +2

Query: 2   DRMRNCSYEEALVSLEFMPYRACYPVXXXXXXXXXXXXXXXXXXXXDLFVSKAWVD 169
           D++R  SYEE L+ LE MPYRACYP+                    DL +SKA V+
Sbjct: 32  DQIRGRSYEETLMILELMPYRACYPIFKLVYSAAANASHNMGFNEADLIISKAEVN 87


>sp|Q3BAJ7|RK22_PHAAO 50S ribosomal protein L22, chloroplastic
           OS=Phalaenopsis aphrodite subsp. formosana GN=rpl22 PE=3
           SV=1
          Length = 119

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 24/56 (42%), Positives = 30/56 (53%)
 Frame = +2

Query: 2   DRMRNCSYEEALVSLEFMPYRACYPVXXXXXXXXXXXXXXXXXXXXDLFVSKAWVD 169
           D++R  SYEEAL+ LE MPYRA YP+                    DLF+SKA V+
Sbjct: 28  DQIRGRSYEEALMILELMPYRASYPILKLVYSAAANASHNMGLNEVDLFISKAEVN 83
tr_hit_id B0I2M3
Definition tr|B0I2M3|B0I2M3_EURFE 50S ribosomal protein L22 OS=Euryale ferox
Align length 56
Score (bit) 52.4
E-value 1.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917114|Adiantum capillus-veneris mRNA, clone:
YMU001_000096_B08.
         (180 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B0I2M3|B0I2M3_EURFE 50S ribosomal protein L22 OS=Euryale fero...    52   1e-05
tr|B0I2M7|B0I2M7_BRASC 50S ribosomal protein L22 OS=Brasenia sch...    51   3e-05
tr|B0I2H9|B0I2H9_9MAGN 50S ribosomal protein L22 OS=Grevillea ro...    49   2e-04
tr|B0I2D5|B0I2D5_HEDCO Ribosomal protein L22 OS=Hedychium corona...    47   4e-04
tr|A9QB49|A9QB49_9SPER 50S ribosomal protein L22 (Fragment) OS=C...    47   4e-04
tr|A7KVR7|A7KVR7_OLEEU 50S ribosomal protein L22 (Fragment) OS=O...    47   4e-04
tr|B0I2J5|B0I2J5_9MAGN 50S ribosomal protein L22 (Fragment) OS=S...    45   0.002
tr|B8HMQ9|B8HMQ9_9CHRO Ribosomal protein L22 OS=Cyanothece sp. P...    45   0.002
tr|B1XJT4|B1XJT4_SYNP2 Ribosomal protein L22 OS=Synechococcus sp...    44   0.003
tr|Q4C112|Q4C112_CROWT 50S ribosomal protein L22 OS=Crocosphaera...    44   0.003
tr|A3IQ08|A3IQ08_9CHRO 50S ribosomal protein L22 OS=Cyanothece s...    44   0.004
tr|B0I2N5|B0I2N5_BUXMI 50S ribosomal protein L22 (Fragment) OS=B...    44   0.004
tr|B0I2K7|B0I2K7_9MYRT 50S ribosomal protein L22 OS=Syzygium jam...    44   0.004
tr|B0I2E7|B0I2E7_NELNU Ribosomal protein L22 (Fragment) OS=Nelum...    44   0.004
tr|B7T3T7|B7T3T7_9ROSI Ribosomal protein L22 OS=Monsonia specios...    44   0.005
tr|B0I2X4|B0I2X4_9LILI 50S ribosomal protein L22 OS=Caldesia gra...    44   0.005
tr|B0I2X0|B0I2X0_9LILI 50S ribosomal protein L22 OS=Potamogeton ...    44   0.005
tr|B0I2V5|B0I2V5_9ASPA 50S ribosomal protein L22 OS=Dendrobium s...    44   0.005
tr|B0I295|B0I295_ALICA 50S ribosomal protein L22 OS=Alisma canal...    44   0.005
tr|B0I2B1|B0I2B1_LIVCH 50S ribosomal protein L22 OS=Livistona ch...    43   0.007
tr|A9QBG1|A9QBG1_GINBI 50S ribosomal protein L22 (Fragment) OS=G...    43   0.007
tr|B5WA31|B5WA31_SPIMA Ribosomal protein L22 OS=Arthrospira maxi...    43   0.009
tr|B4B3M9|B4B3M9_9CHRO Ribosomal protein L22 OS=Cyanothece sp. P...    43   0.009
tr|B7X8P6|B7X8P6_9LILI 50S ribosomal protein L22 OS=Stichoneuron...    43   0.009
tr|B7X8P3|B7X8P3_9LILI 50S ribosomal protein L22 OS=Stemona tube...    43   0.009
tr|B7X8P0|B7X8P0_9LILI 50S ribosomal protein L22 OS=Stemona phyl...    43   0.009
tr|B7X8N7|B7X8N7_9LILI 50S ribosomal protein L22 OS=Stemona sp. ...    43   0.009
tr|B7X8N1|B7X8N1_9LILI 50S ribosomal protein L22 OS=Stemona coll...    43   0.009
tr|B7X8M8|B7X8M8_9LILI 50S ribosomal protein L22 OS=Stemona burk...    43   0.009
tr|B7X8M5|B7X8M5_9LILI 50S ribosomal protein L22 OS=Stemona aphy...    43   0.009

>tr|B0I2M3|B0I2M3_EURFE 50S ribosomal protein L22 OS=Euryale ferox
           GN=rpl22 PE=3 SV=1
          Length = 125

 Score = 52.4 bits (124), Expect = 1e-05
 Identities = 25/56 (44%), Positives = 32/56 (57%)
 Frame = +2

Query: 2   DRMRNCSYEEALVSLEFMPYRACYPVXXXXXXXXXXXXXXXXXXXXDLFVSKAWVD 169
           D++R CSYE+AL+ LE MPYRACYP+                    DLF+SKA V+
Sbjct: 29  DQIRGCSYEQALMILELMPYRACYPIFKLVYSAAANASHNRGLKEADLFISKAEVN 84


>tr|B0I2M7|B0I2M7_BRASC 50S ribosomal protein L22 OS=Brasenia
           schreberi GN=rpl22 PE=3 SV=1
          Length = 125

 Score = 50.8 bits (120), Expect = 3e-05
 Identities = 24/56 (42%), Positives = 31/56 (55%)
 Frame = +2

Query: 2   DRMRNCSYEEALVSLEFMPYRACYPVXXXXXXXXXXXXXXXXXXXXDLFVSKAWVD 169
           D++R CSYE+ L+ LE MPYRACYP+                    DLF+SKA V+
Sbjct: 29  DQIRGCSYEQTLMILELMPYRACYPIFKLVYSAAANASHNRGLEEADLFISKAEVN 84


>tr|B0I2H9|B0I2H9_9MAGN 50S ribosomal protein L22 OS=Grevillea
           robusta GN=rpl22 PE=3 SV=1
          Length = 133

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 23/56 (41%), Positives = 30/56 (53%)
 Frame = +2

Query: 2   DRMRNCSYEEALVSLEFMPYRACYPVXXXXXXXXXXXXXXXXXXXXDLFVSKAWVD 169
           DR+R CSYE+ L+ LE MPYRACYP+                    +L +SKA V+
Sbjct: 33  DRIRGCSYEQTLMILELMPYRACYPILKLIYSAAANASHNRGFNKENLIISKAQVN 88


>tr|B0I2D5|B0I2D5_HEDCO Ribosomal protein L22 OS=Hedychium
           coronarium GN=rpl22 PE=4 SV=1
          Length = 129

 Score = 47.4 bits (111), Expect = 4e-04
 Identities = 24/58 (41%), Positives = 31/58 (53%)
 Frame = +2

Query: 2   DRMRNCSYEEALVSLEFMPYRACYPVXXXXXXXXXXXXXXXXXXXXDLFVSKAWVDNS 175
           D++R  SYEE L+ LE MPYRACYP+                    DLF+S+A V+ S
Sbjct: 31  DQIRGRSYEETLMILELMPYRACYPILKLVYSAAANASHNMNLKETDLFISEAKVNKS 88


>tr|A9QB49|A9QB49_9SPER 50S ribosomal protein L22 (Fragment)
           OS=Cycas micronesica GN=rpl22 PE=3 SV=1
          Length = 139

 Score = 47.4 bits (111), Expect = 4e-04
 Identities = 24/56 (42%), Positives = 32/56 (57%)
 Frame = +2

Query: 2   DRMRNCSYEEALVSLEFMPYRACYPVXXXXXXXXXXXXXXXXXXXXDLFVSKAWVD 169
           D++RN SYE+AL+ LE MPYRACYP+                    +LFVS+A V+
Sbjct: 29  DQVRNRSYEQALMILELMPYRACYPILQLIPSAAANANHNMGLNKANLFVSRAEVN 84


>tr|A7KVR7|A7KVR7_OLEEU 50S ribosomal protein L22 (Fragment) OS=Olea
           europaea GN=rpl22 PE=3 SV=1
          Length = 146

 Score = 47.4 bits (111), Expect = 4e-04
 Identities = 23/56 (41%), Positives = 30/56 (53%)
 Frame = +2

Query: 2   DRMRNCSYEEALVSLEFMPYRACYPVXXXXXXXXXXXXXXXXXXXXDLFVSKAWVD 169
           D++R CSYEE L+ LE MPYRACYP+                    +L +SKA V+
Sbjct: 28  DQIRGCSYEETLMILELMPYRACYPIFKLVYSAAANASYNIGSNEANLVISKAEVN 83


>tr|B0I2J5|B0I2J5_9MAGN 50S ribosomal protein L22 (Fragment)
           OS=Stauntonia hexaphylla GN=rpl22 PE=3 SV=1
          Length = 168

 Score = 45.1 bits (105), Expect = 0.002
 Identities = 23/56 (41%), Positives = 29/56 (51%)
 Frame = +2

Query: 2   DRMRNCSYEEALVSLEFMPYRACYPVXXXXXXXXXXXXXXXXXXXXDLFVSKAWVD 169
           D++R  SYEE L+ LE MPYRACYP+                    DL +SKA V+
Sbjct: 29  DQIRGRSYEETLMILELMPYRACYPIFKLVYSAAANASHNMGFNEADLIISKAEVN 84


>tr|B8HMQ9|B8HMQ9_9CHRO Ribosomal protein L22 OS=Cyanothece sp. PCC
           7425 GN=Cyan7425_1297 PE=4 SV=1
          Length = 119

 Score = 44.7 bits (104), Expect = 0.002
 Identities = 23/56 (41%), Positives = 29/56 (51%)
 Frame = +2

Query: 2   DRMRNCSYEEALVSLEFMPYRACYPVXXXXXXXXXXXXXXXXXXXXDLFVSKAWVD 169
           D++R  SY EAL+ LEFMPYRAC P+                    DL VS+A+ D
Sbjct: 29  DQIRGRSYREALIILEFMPYRACDPILKVLRSAVANAEHNEGLNPTDLVVSQAYAD 84


>tr|B1XJT4|B1XJT4_SYNP2 Ribosomal protein L22 OS=Synechococcus sp.
           (strain ATCC 27264 / PCC 7002 / PR-6) GN=rplV PE=4 SV=1
          Length = 119

 Score = 44.3 bits (103), Expect = 0.003
 Identities = 24/56 (42%), Positives = 28/56 (50%)
 Frame = +2

Query: 2   DRMRNCSYEEALVSLEFMPYRACYPVXXXXXXXXXXXXXXXXXXXXDLFVSKAWVD 169
           D++R  SY EAL+ LEFMPYRAC PV                    DL VS A+ D
Sbjct: 28  DQIRGRSYREALIILEFMPYRACEPVLKVLRSAVANAEHNEGLDPADLVVSAAFAD 83


>tr|Q4C112|Q4C112_CROWT 50S ribosomal protein L22 OS=Crocosphaera
           watsonii GN=CwatDRAFT_2444 PE=3 SV=1
          Length = 120

 Score = 44.3 bits (103), Expect = 0.003
 Identities = 23/56 (41%), Positives = 28/56 (50%)
 Frame = +2

Query: 2   DRMRNCSYEEALVSLEFMPYRACYPVXXXXXXXXXXXXXXXXXXXXDLFVSKAWVD 169
           D++R  SY EAL+ LEFMPYRAC P+                     L VSKA+ D
Sbjct: 28  DQIRGRSYREALIILEFMPYRACEPILKLLRSAVANAEHNQGLDPGSLVVSKAYAD 83