BP917124 |
Clone id |
YMU001_000096_C11 |
Library |
YMU01 |
Length |
526 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000096_C11. |
Accession |
BP917124 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL3159Contig1 |
Sequence |
TCCACAATCATCTTACATACTCCCCGGGAGTGGAGGCACATCGTCTGGTGAAATAGTTGC TTCTGTTGTAGTGGCAGCTCACATATCAGATGTGTTAGGCAAGTCGAAGGCTTGCATACA GGCTCTAACAGCTATTCGTCGCTGCTCTTGGGAGCTTAAGCTTGCTTCAAAGGCTGCCTC AGTGCTCACTCTTGTTGAAGGTAACAGAAAGGTCGTAGCTGCAGTTGTTAATTGTTCAGG AGATACTTATTTAAATGAAAGCATGGGTGTGAAGACTTTGCAATGTCGTCATGACCAAAA AACTACCAACTTAGGCATAAGAAAACGAGGCCAAGATTATTGTACTTCTCTGGATTCAGA AAATGCCATCCAGAAAATGCAGGCATGTCATACAGAGATAGAAACTTGTGAAGGTGATCC AAAAGGAAGGCCTGTAAGTGTCAGTAAGAAGATTTGTTCTCCTAGAGGCTGTTCAGGCTT GCCAATGAATGCATCAGATGTTGTCTCGCTTCTGTGCATGGACAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9AWL7 |
Definition |
sp|Q9AWL7|GIGAN_ORYSJ Protein GIGANTEA OS=Oryza sativa subsp. japonica |
Align length |
74 |
Score (bit) |
53.5 |
E-value |
6.0e-07 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B8LQU1 |
Definition |
tr|B8LQU1|B8LQU1_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
168 |
Score (bit) |
75.5 |
E-value |
2.0e-12 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP917124|Adiantum capillus-veneris mRNA, clone: YMU001_000096_C11. (526 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|B8LQU1|B8LQU1_PICSI Putative uncharacterized protein OS=Picea... 75 2e-12 tr|A5Y6J2|A5Y6J2_PEA LATE BLOOMER 1 OS=Pisum sativum GN=LATE1 PE... 62 1e-08 tr|B2KYP1|B2KYP1_MAIZE Gigantea OS=Zea mays GN=GI PE=2 SV=1 58 3e-07 tr|B1H3M2|B1H3M2_MAIZE Gigantea 1A OS=Zea mays GN=gigz1A PE=2 SV=1 58 3e-07 tr|A5Y7E8|A5Y7E8_ARALP GIGANTEA (Fragment) OS=Arabidopsis lyrata... 57 4e-07 tr|Q717V9|Q717V9_WHEAT Gigantea OS=Triticum aestivum GN=TaGI1 PE... 56 1e-06 tr|B4FQT9|B4FQT9_MAIZE Putative uncharacterized protein OS=Zea m... 56 1e-06 tr|B1H3M1|B1H3M1_MAIZE Gigantea 1B OS=Zea mays GN=gigz1B PE=2 SV=1 56 1e-06 tr|A7QX52|A7QX52_VITVI Chromosome undetermined scaffold_213, who... 56 1e-06 tr|A5C4A8|A5C4A8_VITVI Putative uncharacterized protein OS=Vitis... 56 1e-06 tr|Q19A94|Q19A94_LOLPR GIGANTEA OS=Lolium perenne GN=GI PE=4 SV=1 55 2e-06 tr|Q945R4|Q945R4_HORVU Gigantea-like protein (Fragment) OS=Horde... 54 4e-06 tr|Q6B535|Q6B535_WHEAT Gigantea 2 OS=Triticum aestivum GN=TaGI2 ... 54 4e-06 tr|Q6B534|Q6B534_WHEAT Gigantea 3 OS=Triticum aestivum GN=TaGI3 ... 54 4e-06 tr|Q56S02|Q56S02_HORVU Gigantea-like protein OS=Hordeum vulgare ... 54 4e-06 tr|Q56S01|Q56S01_HORVD Gigantea-like protein OS=Hordeum vulgare ... 54 4e-06 tr|Q50K77|Q50K77_LEMGI GI homologue OS=Lemna gibba GN=LgGI H1 PE... 54 6e-06 tr|Q0JQ44|Q0JQ44_ORYSJ Os01g0182600 protein OS=Oryza sativa subs... 54 6e-06 tr|B8ADL4|B8ADL4_ORYSI Putative uncharacterized protein OS=Oryza... 54 6e-06 tr|A2ZQ09|A2ZQ09_ORYSJ Putative uncharacterized protein OS=Oryza... 54 6e-06 tr|A0SGQ0|A0SGQ0_ORYRU Gigantea-like protein (Fragment) OS=Oryza... 54 6e-06 tr|A0SGP9|A0SGP9_ORYRU Gigantea-like protein (Fragment) OS=Oryza... 54 6e-06 tr|A0SGP8|A0SGP8_ORYRU Gigantea-like protein (Fragment) OS=Oryza... 54 6e-06 tr|A0SGN8|A0SGN8_ORYNI Gigantea-like protein (Fragment) OS=Oryza... 54 6e-06 tr|A0SGN7|A0SGN7_ORYNI Gigantea-like protein (Fragment) OS=Oryza... 54 6e-06 tr|A0SGN5|A0SGN5_9ORYZ Gigantea-like protein (Fragment) OS=Oryza... 54 6e-06 tr|A0SGN3|A0SGN3_ORYLO Gigantea-like protein (Fragment) OS=Oryza... 54 6e-06 tr|A0SGN2|A0SGN2_9ORYZ Gigantea-like protein (Fragment) OS=Oryza... 54 6e-06 tr|A0SGN1|A0SGN1_9ORYZ Gigantea-like protein (Fragment) OS=Oryza... 54 6e-06 tr|A0PI49|A0PI49_ORYRU Gigantea-like protein (Fragment) OS=Oryza... 54 6e-06
>tr|B8LQU1|B8LQU1_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 1179
Score = 75.5 bits (184), Expect = 2e-12 Identities = 49/168 (29%), Positives = 84/168 (50%), Gaps = 3/168 (1%) Frame = +2
Query: 32 GGTSSGEIXXXXXXXXHISDVLGKSKACIQALTAIRRCSWELKLASKAASVLTLVEGNRK 211 G SS EI H+SD+LG+SKAC+ AL+ + RC W+ +L ++A++VL L++ NRK Sbjct: 734 GNYSSSEIIAAAMVAAHVSDLLGRSKACMHALSVMMRCKWDSELCARASTVLALIDVNRK 793
Query: 212 VVAAVVNCSGDTYLNESMGVKTLQCRHDQKTTNLGIRKRGQDYCTSLDSENA---IQKMQ 382 VA++++ S S+ + + T G ++D + I ++ Sbjct: 794 AVASIIDKS-----ESSVSHVQYRAEKNYSTDRAAYSGVGIHTEVAIDQNHEGGNILSLE 848
Query: 383 ACHTEIETCEGDPKGRPVSVSKKICSPRGCSGLPMNASDVVSLLCMDK 526 CH ++E + + S + + L M+ SDVVSLL +D+ Sbjct: 849 NCHGQVEVKSHNGQENFFMDVVIAGSGKVIANLSMDGSDVVSLLTVDR 896
>tr|A5Y6J2|A5Y6J2_PEA LATE BLOOMER 1 OS=Pisum sativum GN=LATE1 PE=2 SV=1 Length = 1175
Score = 62.4 bits (150), Expect = 1e-08 Identities = 50/177 (28%), Positives = 87/177 (49%), Gaps = 9/177 (5%) Frame = +2
Query: 23 PGSGGT----SSGEIXXXXXXXXHISDVLGKSKACIQALTAIRRCSWELKLASKAASVLT 190 P S GT SS EI H+S++ +SKAC+ AL+ + RC W ++ S+A+S+ Sbjct: 726 PSSVGTPWSYSSNEIVAAAMVAAHVSELFRRSKACMHALSVLIRCKWNKEIHSRASSLYN 785
Query: 191 LVEGNRKVVAAVVNCSGD---TYLNESMGVKTLQCRHDQKTTNLGIRKRGQD--YCTSLD 355 L++ + KVVA++VN + T ++ + +L C HD K N D +++ Sbjct: 786 LIDIHSKVVASIVNKAEPLEATLIHAPIYKDSLVC-HDGKRKNRSENGGCSDSRQTSTVP 844
Query: 356 SENAIQKMQACHTEIETCEGDPKGRPVSVSKKICSPRGCSGLPMNASDVVSLLCMDK 526 SE++ + H T + + ++ K G +G + ASD+ + L MD+ Sbjct: 845 SEDSTPSKHS-HKSGRTPCSNEEASGYNLGK------GVTGFSLEASDLANFLTMDR 894
>tr|B2KYP1|B2KYP1_MAIZE Gigantea OS=Zea mays GN=GI PE=2 SV=1 Length = 1162
Score = 57.8 bits (138), Expect = 3e-07 Identities = 41/176 (23%), Positives = 84/176 (47%), Gaps = 8/176 (4%) Frame = +2
Query: 23 PGSGGTS----SGEIXXXXXXXXHISDVLGKSKACIQALTAIRRCSWELKLASKAASVLT 190 P S GTS S EI H+S++ +S+ C+ AL+A+ RC W+ +++++A+S+ Sbjct: 714 PSSVGTSWSYSSNEIVAAAMVAAHVSELFRRSRPCLNALSALMRCKWDAEISTRASSLYH 773
Query: 191 LVEGNRKVVAAVVNCSGDTYLNESMGVKTLQCRHDQKTTNL----GIRKRGQDYCTSLDS 358 L++ + K V+++VN + + ++ +H ++ +N ++ ++ TS Sbjct: 774 LIDLHGKTVSSIVNKAEPLEAHLTLTPVKRDNQHHREESNTSSLDSVKLENKNGSTSHKK 833
Query: 359 ENAIQKMQACHTEIETCEGDPKGRPVSVSKKICSPRGCSGLPMNASDVVSLLCMDK 526 + + C E+ GD S + + L + ASD+ + L MD+ Sbjct: 834 NGFSRPLLKCAEEV-LLNGDVAS---------TSGKSIASLQVEASDLANFLTMDR 879
>tr|B1H3M2|B1H3M2_MAIZE Gigantea 1A OS=Zea mays GN=gigz1A PE=2 SV=1 Length = 1162
Score = 57.8 bits (138), Expect = 3e-07 Identities = 41/176 (23%), Positives = 84/176 (47%), Gaps = 8/176 (4%) Frame = +2
Query: 23 PGSGGTS----SGEIXXXXXXXXHISDVLGKSKACIQALTAIRRCSWELKLASKAASVLT 190 P S GTS S EI H+S++ +S+ C+ AL+A+ RC W+ +++++A+S+ Sbjct: 714 PSSVGTSWSYSSNEIVAAAMVAAHVSELFRRSRPCLNALSALMRCKWDAEISTRASSLYH 773
Query: 191 LVEGNRKVVAAVVNCSGDTYLNESMGVKTLQCRHDQKTTNL----GIRKRGQDYCTSLDS 358 L++ + K V+++VN + + ++ +H ++ +N ++ ++ TS Sbjct: 774 LIDLHGKTVSSIVNKAEPLEAHLTLTPVKRDNQHHREESNTSSLDSVKLENKNGSTSHKK 833
Query: 359 ENAIQKMQACHTEIETCEGDPKGRPVSVSKKICSPRGCSGLPMNASDVVSLLCMDK 526 + + C E+ GD S + + L + ASD+ + L MD+ Sbjct: 834 NGFSRPLLKCAEEV-LLNGDVAS---------TSGKSIASLQVEASDLANFLTMDR 879
>tr|A5Y7E8|A5Y7E8_ARALP GIGANTEA (Fragment) OS=Arabidopsis lyrata subsp. petraea GN=GI PE=4 SV=1 Length = 1173
Score = 57.4 bits (137), Expect = 4e-07 Identities = 46/175 (26%), Positives = 84/175 (48%), Gaps = 7/175 (4%) Frame = +2
Query: 23 PGSGGT----SSGEIXXXXXXXXHISDVLGKSKACIQALTAIRRCSWELKLASKAASVLT 190 P S GT SS EI HIS++ +SKA AL+ + RC W+ ++ +A+S+ Sbjct: 724 PSSVGTPWSYSSSEIVAAAMVAAHISELFRRSKALTHALSGLMRCKWDKEIHKRASSLYN 783
Query: 191 LVEGNRKVVAAVVNCSG--DTYL-NESMGVKTLQCRHDQKTTNLGIRKRGQDYCTSLDSE 361 L++ + KVVA++V+ + + YL N + +L C + ++ R + T++ S Sbjct: 784 LIDVHSKVVASIVDKAEPLEAYLKNTPVQKDSLTCLNWKQQNTCASTTR---FDTAVTSA 840
Query: 362 NAIQKMQACHTEIETCEGDPKGRPVSVSKKICSPRGCSGLPMNASDVVSLLCMDK 526 + + + + G+ GRP S +G ++ASD+ + L D+ Sbjct: 841 SRTEMNPRGNHKYARHSGEGSGRP--------SEKGIKDFLLDASDLANFLTADR 887
>tr|Q717V9|Q717V9_WHEAT Gigantea OS=Triticum aestivum GN=TaGI1 PE=2 SV=1 Length = 1155
Score = 55.8 bits (133), Expect = 1e-06 Identities = 26/74 (35%), Positives = 48/74 (64%), Gaps = 4/74 (5%) Frame = +2
Query: 23 PGSGGTS----SGEIXXXXXXXXHISDVLGKSKACIQALTAIRRCSWELKLASKAASVLT 190 P S GTS S EI H S++ +SKAC+ AL++++RC W+ +++++A+S+ Sbjct: 708 PSSVGTSWNYSSNEIVAAAMVAAHASELFRRSKACLNALSSLKRCKWDAEISTRASSLYH 767
Query: 191 LVEGNRKVVAAVVN 232 L++ + K V+++VN Sbjct: 768 LIDLHGKTVSSIVN 781
>tr|B4FQT9|B4FQT9_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 488
Score = 55.8 bits (133), Expect = 1e-06 Identities = 44/174 (25%), Positives = 84/174 (48%), Gaps = 6/174 (3%) Frame = +2
Query: 23 PGSGGTS----SGEIXXXXXXXXHISDVLGKSKACIQALTAIRRCSWELKLASKAASVLT 190 P S GTS S EI H+S++ +S+ C+ +L+A+ RC + +++++A+S+ Sbjct: 42 PSSVGTSWSYSSNEIVAAAMVAAHVSELFRRSRPCLNSLSALMRCKRDAEISTRASSLYH 101
Query: 191 LVEGNRKVVAAVVNCSG--DTYLNESMGVKTLQCRHDQKTTNLGIRKRGQDYCTSLDSEN 364 L++ + K V+++VN + + +L + K Q R ++ TN + ++ S +N Sbjct: 102 LIDLHGKTVSSIVNKAEPLEAHLTLTPVKKVNQHRCEENNTNSSDSAKLENKNGSTHKKN 161
Query: 365 AIQKMQACHTEIETCEGDPKGRPVSVSKKICSPRGCSGLPMNASDVVSLLCMDK 526 K ++ E G S S K + L + ASD+ + L MD+ Sbjct: 162 GFSK-----PHLKCAEEVLNGNVASTSGK-----SIASLQVEASDLANFLTMDR 205
>tr|B1H3M1|B1H3M1_MAIZE Gigantea 1B OS=Zea mays GN=gigz1B PE=2 SV=1 Length = 1160
Score = 55.8 bits (133), Expect = 1e-06 Identities = 44/174 (25%), Positives = 84/174 (48%), Gaps = 6/174 (3%) Frame = +2
Query: 23 PGSGGTS----SGEIXXXXXXXXHISDVLGKSKACIQALTAIRRCSWELKLASKAASVLT 190 P S GTS S EI H+S++ +S+ C+ +L+A+ RC + +++++A+S+ Sbjct: 714 PSSVGTSWSYSSNEIVAAAMVAAHVSELFRRSRPCLNSLSALMRCKRDAEISTRASSLYH 773
Query: 191 LVEGNRKVVAAVVNCSG--DTYLNESMGVKTLQCRHDQKTTNLGIRKRGQDYCTSLDSEN 364 L++ + K V+++VN + + +L + K Q R ++ TN + ++ S +N Sbjct: 774 LIDLHGKTVSSIVNKAEPLEAHLTLTPVKKVNQHRCEENNTNSSDSAKLENKNGSTHKKN 833
Query: 365 AIQKMQACHTEIETCEGDPKGRPVSVSKKICSPRGCSGLPMNASDVVSLLCMDK 526 K ++ E G S S K + L + ASD+ + L MD+ Sbjct: 834 GFSK-----PHLKCAEEVLNGNVASTSGK-----SIASLQVEASDLANFLTMDR 877
>tr|A7QX52|A7QX52_VITVI Chromosome undetermined scaffold_213, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00008956001 PE=4 SV=1 Length = 531
Score = 55.8 bits (133), Expect = 1e-06 Identities = 27/74 (36%), Positives = 46/74 (62%), Gaps = 4/74 (5%) Frame = +2
Query: 23 PGSGGTS----SGEIXXXXXXXXHISDVLGKSKACIQALTAIRRCSWELKLASKAASVLT 190 P S GTS S EI H+S++ +SKAC+ AL+ + RC W+ ++ ++A+S+ Sbjct: 85 PSSVGTSWSYSSNEIVAAAMVAAHVSELFRRSKACMHALSVLMRCKWDEEIYTRASSLYN 144
Query: 191 LVEGNRKVVAAVVN 232 L++ + K VA++VN Sbjct: 145 LIDIHSKAVASIVN 158
>tr|A5C4A8|A5C4A8_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032939 PE=4 SV=1 Length = 1172
Score = 55.8 bits (133), Expect = 1e-06 Identities = 27/74 (36%), Positives = 46/74 (62%), Gaps = 4/74 (5%) Frame = +2
Query: 23 PGSGGTS----SGEIXXXXXXXXHISDVLGKSKACIQALTAIRRCSWELKLASKAASVLT 190 P S GTS S EI H+S++ +SKAC+ AL+ + RC W+ ++ ++A+S+ Sbjct: 726 PSSVGTSWSYSSNEIVAAAMVAAHVSELFRRSKACMHALSVLMRCKWDEEIYTRASSLYN 785
Query: 191 LVEGNRKVVAAVVN 232 L++ + K VA++VN Sbjct: 786 LIDIHSKAVASIVN 799
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