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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917126
Clone id YMU001_000096_D03
Library
Length 447
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000096_D03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CATTAACAATCTGAAGCACATTGAGCCAGATTACTTTTGCCATTGAATAGAAAGCATTCC
CCAACCCATGCTCACGCCGAGCAGATTTGATACATGTACAACTTCATGGGAATAAAATTC
TCCACCCAATCAGCAAAACAGAAACATCTTTCATACTCAATGTGAGTCAGATCATAACAT
CGGTACTTAACCTCTACCATTCCCCTGTATAGGCTCCGATTTTGCCAAATTTGTAGCAAA
TATATCCAAAAGCCTATACTGGGAATGGGCGTGTCAATCCATAATAGAGACAGCTTATGC
CACAATCCTTTCAATATAGTACATTGGACCTGGCCTACCTGTTTGGCCACATTTACACCA
ACATTAGTTCCCCAACGATGGAGGCAGAAGAGGAGGACGTCCATCCTTGAATTGCCCTGA
AGATCTTCTAAATGACCCTGAGAAATG
■■Homology search results ■■ -
sp_hit_id Q8TUF8
Definition sp|Q8TUF8|PRIL_METAC Probable DNA primase large subunit OS=Methanosarcina acetivorans
Align length 54
Score (bit) 32.0
E-value 1.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917126|Adiantum capillus-veneris mRNA, clone:
YMU001_000096_D03.
         (447 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8TUF8|PRIL_METAC Probable DNA primase large subunit OS=Metha...    32   1.2  
sp|Q5XIN6|LETM1_RAT LETM1 and EF-hand domain-containing protein ...    32   1.2  
sp|O95202|LETM1_HUMAN LETM1 and EF-hand domain-containing protei...    32   1.2  
sp|B0JSV5|NDHK_MICAN NAD(P)H-quinone oxidoreductase subunit K OS...    32   1.6  
sp|Q9BXR5|TLR10_HUMAN Toll-like receptor 10 OS=Homo sapiens GN=T...    31   2.1  
sp|Q9Z2I0|LETM1_MOUSE LETM1 and EF-hand domain-containing protei...    31   2.1  
sp|P38172|YBJ5_YEAST Uncharacterized protein YBL095W OS=Saccharo...    31   2.7  
sp|Q9STT7|ATH4_ARATH Putative ABC2 homolog 4 OS=Arabidopsis thal...    31   2.7  
sp|Q8PX26|PRIL_METMA Probable DNA primase large subunit OS=Metha...    30   6.0  
sp|P34114|PHS2_DICDI Glycogen phosphorylase 2 OS=Dictyostelium d...    30   6.1  
sp|Q83FA4|HEMH_COXBU Ferrochelatase OS=Coxiella burnetii GN=hemH...    29   7.8  

>sp|Q8TUF8|PRIL_METAC Probable DNA primase large subunit
           OS=Methanosarcina acetivorans GN=priB PE=3 SV=1
          Length = 371

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 21/54 (38%), Positives = 31/54 (57%)
 Frame = +3

Query: 39  AIE*KAFPNPCSRRADLIHVQLHGNKILHPISKTETSFILNVSQIITSVLNLYH 200
           A+E + FP PC   A L +VQ  G  + H +    TSF+LNV   +  +LNL++
Sbjct: 221 AVEPELFP-PCISHA-LANVQ-GGVNLAHSMRFAMTSFLLNVGMSVEEILNLFN 271


>sp|Q5XIN6|LETM1_RAT LETM1 and EF-hand domain-containing protein 1,
           mitochondrial OS=Rattus norvegicus GN=Letm1 PE=1 SV=1
          Length = 739

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 25/89 (28%), Positives = 38/89 (42%)
 Frame = -2

Query: 356 VNVAKQVGQVQCTILKGLWHKLSLLWIDTPIPSIGFWIYLLQIWQNRSLYRGMVEVKYRC 177
           V V K +GQ     LK  +H   LLWIDT I +   W  L      R   R  + +   C
Sbjct: 146 VVVKKSLGQKILDELKHYYHGFRLLWIDTKIAARMLWRILNGHTLTRRERRQFLRI---C 202

Query: 176 YDLTHIEYERCFCFADWVENFIPMKLYMY 90
            DL  +     F    ++E  +P+ + ++
Sbjct: 203 ADLFRLVPFLVFVVVPFMEFLLPVVVKLF 231


>sp|O95202|LETM1_HUMAN LETM1 and EF-hand domain-containing protein
           1, mitochondrial OS=Homo sapiens GN=LETM1 PE=1 SV=1
          Length = 739

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 25/89 (28%), Positives = 38/89 (42%)
 Frame = -2

Query: 356 VNVAKQVGQVQCTILKGLWHKLSLLWIDTPIPSIGFWIYLLQIWQNRSLYRGMVEVKYRC 177
           V V K +GQ     LK  +H   LLWIDT I +   W  L      R   R  + +   C
Sbjct: 147 VVVKKSLGQRVLDELKHYYHGFRLLWIDTKIAARMLWRILNGHSLTRRERRQFLRI---C 203

Query: 176 YDLTHIEYERCFCFADWVENFIPMKLYMY 90
            DL  +     F    ++E  +P+ + ++
Sbjct: 204 ADLFRLVPFLVFVVVPFMEFLLPVAVKLF 232


>sp|B0JSV5|NDHK_MICAN NAD(P)H-quinone oxidoreductase subunit K
           OS=Microcystis aeruginosa (strain NIES-843) GN=ndhK PE=3
           SV=1
          Length = 247

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 18/47 (38%), Positives = 29/47 (61%)
 Frame = +3

Query: 60  PNPCSRRADLIHVQLHGNKILHPISKTETSFILNVSQIITSVLNLYH 200
           PNP S    +I  Q    KIL+PI +T+ +  L+ + I+T+V +LY+
Sbjct: 3   PNPTSEFKQIIEQQ--SEKILNPIERTKVTQDLSENVILTTVDDLYN 47


>sp|Q9BXR5|TLR10_HUMAN Toll-like receptor 10 OS=Homo sapiens
           GN=TLR10 PE=1 SV=2
          Length = 811

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +2

Query: 137 NRNIFHTQCESDHNIGT*PLPFPCIGSDFAKFVANISKSLYWEW 268
           + N+FH   +    I   P+PF CI + + K  A + K  Y EW
Sbjct: 714 HHNLFHENSDHIILILLEPIPFYCIPTRYHKLKALLEKKAYLEW 757


>sp|Q9Z2I0|LETM1_MOUSE LETM1 and EF-hand domain-containing protein
           1, mitochondrial OS=Mus musculus GN=Letm1 PE=2 SV=1
          Length = 738

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 24/89 (26%), Positives = 38/89 (42%)
 Frame = -2

Query: 356 VNVAKQVGQVQCTILKGLWHKLSLLWIDTPIPSIGFWIYLLQIWQNRSLYRGMVEVKYRC 177
           V V K +GQ     L+  +H   LLWIDT I +   W  L      R   R  + +   C
Sbjct: 146 VVVRKSLGQKVLDELRHYYHGFRLLWIDTKIAARMLWRILNGHTLTRRERRQFLRI---C 202

Query: 176 YDLTHIEYERCFCFADWVENFIPMKLYMY 90
            DL  +     F    ++E  +P+ + ++
Sbjct: 203 ADLFRLVPFLVFVVVPFMEFLLPVVVKLF 231


>sp|P38172|YBJ5_YEAST Uncharacterized protein YBL095W
           OS=Saccharomyces cerevisiae GN=YBL095W PE=1 SV=1
          Length = 270

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = -2

Query: 446 ISQGHLED--LQGNSRMDVLLFCL-HRWGTNVGVNVAKQVGQVQCTILKGLWHKLSLLWI 276
           I +GHLE   L+ +SR     + L H WG N    +AK+  +  C +++  W K    W+
Sbjct: 209 IIEGHLEQFPLEVSSRNGTRSWNLPHIWGFNHKQEMAKKFAKANCILVEPTWFKY-FKWL 267

Query: 275 D 273
           D
Sbjct: 268 D 268


>sp|Q9STT7|ATH4_ARATH Putative ABC2 homolog 4 OS=Arabidopsis
           thaliana GN=ATH4 PE=3 SV=1
          Length = 664

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
 Frame = -2

Query: 446 ISQGHLEDLQGNSRMDVLLFC--LHRWGTNVGVNVAKQVGQVQCTILKGLWHKLSLLWID 273
           +S  +LE LQG+    +  F   + +  T + + +A  +G +  T +  L     L  + 
Sbjct: 206 VSNAYLEFLQGSGTKMLFDFVKEMPKQETRLRLEMASLIGPIFFTWVILLLFPFLLEGLS 265

Query: 272 TPIPSIGFWIYLLQIWQNRSLYRGMVE 192
            P      WIY+++++   SLYRG+ E
Sbjct: 266 FPRS----WIYIMELYPGFSLYRGLYE 288


>sp|Q8PX26|PRIL_METMA Probable DNA primase large subunit
           OS=Methanosarcina mazei GN=priB PE=3 SV=1
          Length = 370

 Score = 29.6 bits (65), Expect = 6.0
 Identities = 20/54 (37%), Positives = 31/54 (57%)
 Frame = +3

Query: 39  AIE*KAFPNPCSRRADLIHVQLHGNKILHPISKTETSFILNVSQIITSVLNLYH 200
           A++ + FP PC   A L +VQ  G  + H +    TSF+LNV   +  +LNL++
Sbjct: 221 AVKPELFP-PCIAYA-LANVQ-GGVNLAHSMRFAMTSFLLNVGMSVDEILNLFN 271


>sp|P34114|PHS2_DICDI Glycogen phosphorylase 2 OS=Dictyostelium
           discoideum GN=glpD PE=1 SV=2
          Length = 993

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +1

Query: 268 GVSIHNRDSLCHNPFNIVHWTWPTCLATFTPTLVPQRWRQKRRTSILELP*RS 426
           GV+  + + + H+ F + +  WP      T  + P+RW Q+    + EL  RS
Sbjct: 538 GVAYLHSELVKHDVFPLFYEIWPNKFQNKTNGVTPRRWIQQSNPQLAELITRS 590
tr_hit_id Q187D4
Definition tr|Q187D4|Q187D4_CLOD6 Putative O-acetylhomoserine sulfhydrylase OS=Clostridium difficile (strain 630)
Align length 38
Score (bit) 35.0
E-value 1.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917126|Adiantum capillus-veneris mRNA, clone:
YMU001_000096_D03.
         (447 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q187D4|Q187D4_CLOD6 Putative O-acetylhomoserine sulfhydrylase...    35   1.8  
tr|A3UB36|A3UB36_9FLAO Putative uncharacterized protein OS=Croce...    35   2.4  
tr|Q5ZK33|Q5ZK33_CHICK Putative uncharacterized protein OS=Gallu...    34   4.1  
tr|B8MHC1|B8MHC1_9EURO Cell cycle control protein (Cwf22), putat...    33   7.0  
tr|B6QMR1|B6QMR1_PENMA Cell cycle control protein (Cwf22), putat...    33   7.0  
tr|A7Q7P3|A7Q7P3_VITVI Chromosome chr18 scaffold_61, whole genom...    33   9.1  
tr|A5BYN5|A5BYN5_VITVI Putative uncharacterized protein OS=Vitis...    33   9.1  

>tr|Q187D4|Q187D4_CLOD6 Putative O-acetylhomoserine sulfhydrylase
           OS=Clostridium difficile (strain 630) GN=cysD PE=3 SV=1
          Length = 421

 Score = 35.0 bits (79), Expect = 1.8
 Identities = 19/38 (50%), Positives = 28/38 (73%), Gaps = 6/38 (15%)
 Frame = +3

Query: 306 SFQYSTLD-LAYLF-----GHIYTNISSPTMEAEEEDV 401
           +F+YS++D LA LF     GHIY+ IS+PT++A EE +
Sbjct: 30  TFKYSSIDQLAELFDLKVDGHIYSRISNPTIQAFEEKI 67


>tr|A3UB36|A3UB36_9FLAO Putative uncharacterized protein
           OS=Croceibacter atlanticus HTCC2559 GN=CA2559_13318 PE=4
           SV=1
          Length = 386

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = -2

Query: 305 LWHKLSLLWIDTP-IPSIGFWIYLLQIWQNRSLYRGMVEVKYRCYDLTHIEYERCFCFAD 129
           LWH  +  W+ T  I +  +W +   IWQ+ +L +G+ E+      LTHI Y   F FA 
Sbjct: 235 LWHAEAWDWLSTENISAPQYWHFDNNIWQHYTL-QGLKEIDPNA-PLTHISYYEAFAFAQ 292

Query: 128 W 126
           +
Sbjct: 293 F 293


>tr|Q5ZK33|Q5ZK33_CHICK Putative uncharacterized protein OS=Gallus
           gallus GN=RCJMB04_13i11 PE=2 SV=1
          Length = 752

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 25/87 (28%), Positives = 38/87 (43%)
 Frame = -2

Query: 350 VAKQVGQVQCTILKGLWHKLSLLWIDTPIPSIGFWIYLLQIWQNRSLYRGMVEVKYRCYD 171
           V K +GQ     LK  +H   LLWIDT I +   W  L     +R   R  + +   C D
Sbjct: 146 VKKSIGQRIVDELKHYYHGFRLLWIDTKIAARMLWRILHGNTLSRRERRQFLRI---CAD 202

Query: 170 LTHIEYERCFCFADWVENFIPMKLYMY 90
           L  +     F    ++E  +P+ L ++
Sbjct: 203 LFRLVPFLVFLVVPFMEFLLPVALKLF 229


>tr|B8MHC1|B8MHC1_9EURO Cell cycle control protein (Cwf22), putative
           OS=Talaromyces stipitatus ATCC 10500 GN=TSTA_021570 PE=4
           SV=1
          Length = 798

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 20/71 (28%), Positives = 38/71 (53%)
 Frame = -2

Query: 383 LHRWGTNVGVNVAKQVGQVQCTILKGLWHKLSLLWIDTPIPSIGFWIYLLQIWQNRSLYR 204
           +HR+ TN   N+A+  G +      G WH LSL+ ++    +    I++  ++Q+ + + 
Sbjct: 509 IHRYETNRLRNIARFFGHILSNDAIG-WHVLSLIHLNEEETTSSSRIFIKILFQDLAEHM 567

Query: 203 GMVEVKYRCYD 171
           GM ++K R  D
Sbjct: 568 GMAKLKERLTD 578


>tr|B6QMR1|B6QMR1_PENMA Cell cycle control protein (Cwf22), putative
           OS=Penicillium marneffei ATCC 18224 GN=PMAA_051280 PE=4
           SV=1
          Length = 801

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 20/71 (28%), Positives = 38/71 (53%)
 Frame = -2

Query: 383 LHRWGTNVGVNVAKQVGQVQCTILKGLWHKLSLLWIDTPIPSIGFWIYLLQIWQNRSLYR 204
           +HR+ TN   N+A+  G +      G WH LSL+ ++    +    I++  ++Q+ + + 
Sbjct: 509 IHRYETNRLRNIARFFGHILSNDAIG-WHVLSLIHLNEEETTSSSRIFIKILFQDLAEHM 567

Query: 203 GMVEVKYRCYD 171
           GM ++K R  D
Sbjct: 568 GMAKLKERLTD 578


>tr|A7Q7P3|A7Q7P3_VITVI Chromosome chr18 scaffold_61, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00031939001
           PE=4 SV=1
          Length = 676

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = -2

Query: 338 VGQVQCTILKGLW--HKLSLLWIDTPIPSIGFWIYLLQIWQNRSLYR 204
           VG V  T+L   +  HK S +W+ T + S+GF + LL I+    L++
Sbjct: 21  VGSVSSTLLSKFYFIHKGSSIWVSTWVQSVGFPLLLLLIYLPHHLFK 67


>tr|A5BYN5|A5BYN5_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_021892 PE=4 SV=1
          Length = 638

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = -2

Query: 338 VGQVQCTILKGLW--HKLSLLWIDTPIPSIGFWIYLLQIWQNRSLYR 204
           VG V  T+L   +  HK S +W+ T + S+GF + LL I+    L++
Sbjct: 362 VGSVSSTLLSKFYFIHKGSSIWVSTWVQSVGFPLLLLLIYLPHHLFK 408