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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917131
Clone id YMU001_000096_D10
Library
Length 375
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000096_D10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TGATGAGGTGGTTAATGCCTTAGAGAGGGCCTTGAAGAATACAAATGACTGGCAGCTGGC
TGCAATAGATGCCCTCTCAGCATCAGCTAAGTCGCTTGTGGTAGCTATGGCAGTTTATCG
GGGCAGGCTGGGTATTGAGGATGCCACTCAAGTAATTGCGGCTCGAAGAGGAATTTCAGA
TAGAAGCTTGGGGGCTTGTTGAAGGTGGTCATGATATTGATGTAGCAGACTTAAAGTGCA
GGGTGGCAGCTGCCTCTGTTTTCTTGAGACTGTTCTAAAGATCTTCAGGACCTGTTCTAC
CACTTGGCAATTCTAGGCTATAAGAAAGGATCCTTTCCACGAGCCGATCGAAGGTTTAAG
CTCTGAGGGCCCTTT
■■Homology search results ■■ -
sp_hit_id Q91YY4
Definition sp|Q91YY4|ATPF2_MOUSE ATP synthase mitochondrial F1 complex assembly factor 2 OS=Mus musculus
Align length 43
Score (bit) 46.2
E-value 5.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917131|Adiantum capillus-veneris mRNA, clone:
YMU001_000096_D10.
         (375 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q91YY4|ATPF2_MOUSE ATP synthase mitochondrial F1 complex asse...    46   5e-05
sp|Q8N5M1|ATPF2_HUMAN ATP synthase mitochondrial F1 complex asse...    46   7e-05
sp|Q1LZ96|ATPF2_BOVIN ATP synthase mitochondrial F1 complex asse...    45   9e-05
sp|P22135|ATP12_YEAST Protein ATP12, mitochondrial OS=Saccharomy...    36   0.068
sp|Q9HGP4|YK82_SCHPO Bromodomain-containing protein C631.02 OS=S...    30   3.7  
sp|P32489|MEI5_YEAST Meiosis protein 5 OS=Saccharomyces cerevisi...    29   6.3  
sp|Q6L8G4|KR511_HUMAN Keratin-associated protein 5-11 OS=Homo sa...    29   8.3  

>sp|Q91YY4|ATPF2_MOUSE ATP synthase mitochondrial F1 complex
           assembly factor 2 OS=Mus musculus GN=Atpaf2 PE=2 SV=1
          Length = 289

 Score = 46.2 bits (108), Expect = 5e-05
 Identities = 20/43 (46%), Positives = 30/43 (69%)
 Frame = +3

Query: 159 RLEEEFQIEAWGLVEGGHDIDVADLKCRVAAASVFLRLF*RSS 287
           RLEEE+QI+ WG +E  HD ++ +L+ R AA ++F+ L   SS
Sbjct: 238 RLEEEYQIQKWGNIEWAHDYELQELRARTAAGTLFVHLCSESS 280


>sp|Q8N5M1|ATPF2_HUMAN ATP synthase mitochondrial F1 complex
           assembly factor 2 OS=Homo sapiens GN=ATPAF2 PE=1 SV=1
          Length = 289

 Score = 45.8 bits (107), Expect = 7e-05
 Identities = 18/38 (47%), Positives = 28/38 (73%)
 Frame = +3

Query: 159 RLEEEFQIEAWGLVEGGHDIDVADLKCRVAAASVFLRL 272
           RLEEE+QI+ WG +E  HD ++ +L+ R AA ++F+ L
Sbjct: 238 RLEEEYQIQKWGNIEWAHDYELQELRARTAAGTLFIHL 275


>sp|Q1LZ96|ATPF2_BOVIN ATP synthase mitochondrial F1 complex
           assembly factor 2 OS=Bos taurus GN=ATPAF2 PE=2 SV=1
          Length = 289

 Score = 45.4 bits (106), Expect = 9e-05
 Identities = 18/38 (47%), Positives = 28/38 (73%)
 Frame = +3

Query: 159 RLEEEFQIEAWGLVEGGHDIDVADLKCRVAAASVFLRL 272
           RLEEE+QI+ WG +E  HD ++ +L+ R AA ++F+ L
Sbjct: 238 RLEEEYQIQKWGNIEWAHDYELQELRARTAAGTLFVHL 275


>sp|P22135|ATP12_YEAST Protein ATP12, mitochondrial OS=Saccharomyces
           cerevisiae GN=ATP12 PE=1 SV=2
          Length = 325

 Score = 35.8 bits (81), Expect = 0.068
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +3

Query: 162 LEEEFQIEAWGLVEGGHDIDVADLKCRVAAASV 260
           LE  FQ+E WG VE  HD+D  D++ ++  A++
Sbjct: 288 LETIFQVEKWGEVEDTHDVDKRDIRRKIHTAAI 320


>sp|Q9HGP4|YK82_SCHPO Bromodomain-containing protein C631.02
           OS=Schizosaccharomyces pombe GN=SPAC631.02 PE=1 SV=1
          Length = 727

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
 Frame = -1

Query: 252 QLPPCTLSLLHQYHDHLQQAPKLLSEIPLRAAIT*VASSIPSLPR*TAIATTSDLADAER 73
           Q PP T       H  L+Q  +    IP RA +  V  +IP  P  T I    DL   ++
Sbjct: 226 QYPPMTKEQHKYIHAMLRQLRRGRDSIPFRAPVDPVKQNIPDYP--TIIKNPIDLGTMQK 283

Query: 72  ---ASIAASCQSFV 40
              + + +S Q F+
Sbjct: 284 KFSSGVYSSAQHFI 297


>sp|P32489|MEI5_YEAST Meiosis protein 5 OS=Saccharomyces cerevisiae
           GN=MEI5 PE=1 SV=2
          Length = 222

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 16/34 (47%), Positives = 24/34 (70%)
 Frame = -1

Query: 276 RTVSRKQRQLPPCTLSLLHQYHDHLQQAPKLLSE 175
           + ++ K R+L    L+LL Q ++HLQQA K+LSE
Sbjct: 52  KEIAIKNRELTK-QLTLLRQENNHLQQACKILSE 84


>sp|Q6L8G4|KR511_HUMAN Keratin-associated protein 5-11 OS=Homo
           sapiens GN=KRTAP5-11 PE=2 SV=1
          Length = 156

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = +1

Query: 52  AAGCNRC-PLSIS*VACGSYGSLSGQAGY*GCHSSNC 159
           A  C+ C     S   CGS GS  G  G  GC  SNC
Sbjct: 51  ACSCSSCGSCGGSKGGCGSCGSSKGGCGSCGCSQSNC 87
tr_hit_id A9TW86
Definition tr|A9TW86|A9TW86_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 39
Score (bit) 59.3
E-value 1.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917131|Adiantum capillus-veneris mRNA, clone:
YMU001_000096_D10.
         (375 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TW86|A9TW86_PHYPA Predicted protein OS=Physcomitrella paten...    59   1e-14
tr|Q7F1Y6|Q7F1Y6_ORYSJ Os07g0644000 protein OS=Oryza sativa subs...    58   1e-13
tr|B8B545|B8B545_ORYSI Putative uncharacterized protein OS=Oryza...    58   1e-13
tr|A9PI48|A9PI48_POPTR Putative uncharacterized protein OS=Popul...    62   1e-12
tr|Q9FM31|Q9FM31_ARATH Arabidopsis thaliana genomic DNA, chromos...    63   8e-09
tr|Q94BY8|Q94BY8_ARATH AT5g40660/MNF13_180 OS=Arabidopsis thalia...    63   8e-09
tr|Q8LBG1|Q8LBG1_ARATH Putative uncharacterized protein OS=Arabi...    63   8e-09
tr|A7PLW7|A7PLW7_VITVI Chromosome chr14 scaffold_21, whole genom...    59   9e-08
tr|B6TXI2|B6TXI2_MAIZE ATP12 ATPase OS=Zea mays PE=2 SV=1              58   2e-07
tr|B6T754|B6T754_MAIZE ATP12 ATPase OS=Zea mays PE=2 SV=1              58   2e-07
tr|A8J6P8|A8J6P8_CHLRE Assembly factor 2 for F1 mitochondrial AT...    52   1e-06
tr|Q00UT4|Q00UT4_OSTTA F1-ATP synthase assembly protein (ISS) OS...    52   2e-05
tr|A4S7W8|A4S7W8_OSTLU Predicted protein OS=Ostreococcus lucimar...    52   2e-05
tr|A7SDZ9|A7SDZ9_NEMVE Predicted protein (Fragment) OS=Nematoste...    50   4e-05
tr|Q6P847|Q6P847_XENTR Putative uncharacterized protein MGC75949...    48   3e-04
tr|Q4V7H3|Q4V7H3_XENLA MGC115713 protein OS=Xenopus laevis GN=MG...    48   3e-04
tr|Q4S4H0|Q4S4H0_TETNG Chromosome 2 SCAF14738, whole genome shot...    47   4e-04
tr|B5X6N9|B5X6N9_SALSA ATP synthase mitochondrial F1 complex ass...    47   6e-04
tr|B7PPV4|B7PPV4_IXOSC Putative uncharacterized protein OS=Ixode...    47   6e-04
tr|A3KP55|A3KP55_DANRE Atpaf2 protein OS=Danio rerio GN=atpaf2 P...    46   0.001
tr|Q9BGP5|Q9BGP5_MACFA Putative uncharacterized protein OS=Macac...    46   0.001
tr|Q16TS9|Q16TS9_AEDAE Putative uncharacterized protein OS=Aedes...    45   0.002
tr|B6PWJ0|B6PWJ0_BRAFL Putative uncharacterized protein (Fragmen...    45   0.002
tr|B6N5H0|B6N5H0_BRAFL Putative uncharacterized protein OS=Branc...    45   0.002
tr|B4IFN0|B4IFN0_DROSE GM23405 OS=Drosophila sechellia GN=GM2340...    45   0.002
tr|B4Q4C9|B4Q4C9_DROSI GD24313 OS=Drosophila simulans GN=GD24313...    45   0.002
tr|B4GT38|B4GT38_DROPE GL26360 OS=Drosophila persimilis GN=GL263...    45   0.002
tr|Q9VID7|Q9VID7_DROME Lethal (2) k14505 OS=Drosophila melanogas...    44   0.003
tr|Q8T3M6|Q8T3M6_DROME GM08665p OS=Drosophila melanogaster GN=l(...    44   0.003
tr|Q29KM5|Q29KM5_DROPS GA21252 OS=Drosophila pseudoobscura pseud...    44   0.003

>tr|A9TW86|A9TW86_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_226078 PE=4 SV=1
          Length = 242

 Score = 59.3 bits (142), Expect(2) = 1e-14
 Identities = 25/39 (64%), Positives = 32/39 (82%)
 Frame = +3

Query: 156 LRLEEEFQIEAWGLVEGGHDIDVADLKCRVAAASVFLRL 272
           +RLEE  Q+E WG VEGGHDID AD++ ++AA SVF+RL
Sbjct: 203 IRLEENHQVEEWGYVEGGHDIDEADMRVKIAACSVFMRL 241



 Score = 43.1 bits (100), Expect(2) = 1e-14
 Identities = 22/50 (44%), Positives = 29/50 (58%)
 Frame = +2

Query: 8   VVNALERALKNTNDWQLAAIDXXXXXXXXXXXXXXXYRGRLGIEDATQVI 157
           V+ A+E+ L  ++DWQLAAID                RGRLGIE+A +VI
Sbjct: 154 VLEAMEKVLMQSSDWQLAAIDWLAGTARSLIVALAIARGRLGIEEAMEVI 203


>tr|Q7F1Y6|Q7F1Y6_ORYSJ Os07g0644000 protein OS=Oryza sativa subsp.
           japonica GN=OJ1003_C06.132 PE=4 SV=1
          Length = 321

 Score = 58.2 bits (139), Expect(2) = 1e-13
 Identities = 24/39 (61%), Positives = 34/39 (87%)
 Frame = +3

Query: 156 LRLEEEFQIEAWGLVEGGHDIDVADLKCRVAAASVFLRL 272
           +RLEE+ Q++ WGLVEGGHD+D+ADLK ++++A VFL L
Sbjct: 279 IRLEEDHQVDRWGLVEGGHDVDIADLKVQMSSAVVFLLL 317



 Score = 40.8 bits (94), Expect(2) = 1e-13
 Identities = 20/50 (40%), Positives = 29/50 (58%)
 Frame = +2

Query: 8   VVNALERALKNTNDWQLAAIDXXXXXXXXXXXXXXXYRGRLGIEDATQVI 157
           + NA+E  LKNT D++LA+ID               +RG+LGIE A ++I
Sbjct: 230 LANAVETVLKNTTDFELASIDAMAAAAHSLVIPLAIFRGKLGIEQAIELI 279


>tr|B8B545|B8B545_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_27075 PE=4 SV=1
          Length = 321

 Score = 58.2 bits (139), Expect(2) = 1e-13
 Identities = 24/39 (61%), Positives = 34/39 (87%)
 Frame = +3

Query: 156 LRLEEEFQIEAWGLVEGGHDIDVADLKCRVAAASVFLRL 272
           +RLEE+ Q++ WGLVEGGHD+D+ADLK ++++A VFL L
Sbjct: 279 IRLEEDHQVDRWGLVEGGHDVDIADLKVQMSSAVVFLLL 317



 Score = 40.8 bits (94), Expect(2) = 1e-13
 Identities = 20/50 (40%), Positives = 29/50 (58%)
 Frame = +2

Query: 8   VVNALERALKNTNDWQLAAIDXXXXXXXXXXXXXXXYRGRLGIEDATQVI 157
           + NA+E  LKNT D++LA+ID               +RG+LGIE A ++I
Sbjct: 230 LANAVETVLKNTTDFELASIDAMAAAAHSLVIPLAIFRGKLGIEQAIELI 279


>tr|A9PI48|A9PI48_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 330

 Score = 62.4 bits (150), Expect(2) = 1e-12
 Identities = 25/39 (64%), Positives = 36/39 (92%)
 Frame = +3

Query: 156 LRLEEEFQIEAWGLVEGGHDIDVADLKCRVAAASVFLRL 272
           +RLEE+FQ++ WGLVEGGHDID+ADL+ ++++A+VFL L
Sbjct: 289 IRLEEDFQVDTWGLVEGGHDIDIADLRVQISSAAVFLGL 327



 Score = 33.5 bits (75), Expect(2) = 1e-12
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +2

Query: 8   VVNALERALKNTNDWQLAAIDXXXXXXXXXXXXXXXYRGRLGIEDATQVI 157
           +V A+E  LK T+D QLA ID                +G+L IE+A ++I
Sbjct: 240 LVKAIENLLKQTDDCQLAVIDAIASAAHSLIIAVGIVKGKLDIEEAIELI 289


>tr|Q9FM31|Q9FM31_ARATH Arabidopsis thaliana genomic DNA, chromosome
           5, P1 clone:MNF13 OS=Arabidopsis thaliana PE=4 SV=1
          Length = 322

 Score = 62.8 bits (151), Expect = 8e-09
 Identities = 27/42 (64%), Positives = 37/42 (88%)
 Frame = +3

Query: 147 LK*LRLEEEFQIEAWGLVEGGHDIDVADLKCRVAAASVFLRL 272
           +K +RLEE+ Q++ WGLVEGGHDIDVADLK ++++A+VFL L
Sbjct: 277 IKLIRLEEDLQVDKWGLVEGGHDIDVADLKVQISSATVFLAL 318



 Score = 37.0 bits (84), Expect = 0.49
 Identities = 27/88 (30%), Positives = 39/88 (44%)
 Frame = +2

Query: 2   DEVVNALERALKNTNDWQLAAIDXXXXXXXXXXXXXXXYRGRLGIEDATQVIAARRGISD 181
           D++V A+E  LK TND +LA+ID               + G+L I+DA ++I     +  
Sbjct: 229 DKLVKAVEELLKKTNDGELASIDALQASAHSIVIALGIFCGKLQIDDAIKLIRLEEDLQV 288

Query: 182 RSLGAC*RWS*Y*CSRLKVQGGSCLCFL 265
              G          + LKVQ  S   FL
Sbjct: 289 DKWGLVEGGHDIDVADLKVQISSATVFL 316


>tr|Q94BY8|Q94BY8_ARATH AT5g40660/MNF13_180 OS=Arabidopsis thaliana
           GN=At5g40660 PE=2 SV=1
          Length = 325

 Score = 62.8 bits (151), Expect = 8e-09
 Identities = 27/42 (64%), Positives = 37/42 (88%)
 Frame = +3

Query: 147 LK*LRLEEEFQIEAWGLVEGGHDIDVADLKCRVAAASVFLRL 272
           +K +RLEE+ Q++ WGLVEGGHDIDVADLK ++++A+VFL L
Sbjct: 280 IKLIRLEEDLQVDKWGLVEGGHDIDVADLKVQISSATVFLAL 321



 Score = 37.0 bits (84), Expect = 0.49
 Identities = 27/88 (30%), Positives = 39/88 (44%)
 Frame = +2

Query: 2   DEVVNALERALKNTNDWQLAAIDXXXXXXXXXXXXXXXYRGRLGIEDATQVIAARRGISD 181
           D++V A+E  LK TND +LA+ID               + G+L I+DA ++I     +  
Sbjct: 232 DKLVKAVEELLKKTNDGELASIDALQASAHSIVIALGIFCGKLQIDDAIKLIRLEEDLQV 291

Query: 182 RSLGAC*RWS*Y*CSRLKVQGGSCLCFL 265
              G          + LKVQ  S   FL
Sbjct: 292 DKWGLVEGGHDIDVADLKVQISSATVFL 319


>tr|Q8LBG1|Q8LBG1_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 325

 Score = 62.8 bits (151), Expect = 8e-09
 Identities = 27/42 (64%), Positives = 37/42 (88%)
 Frame = +3

Query: 147 LK*LRLEEEFQIEAWGLVEGGHDIDVADLKCRVAAASVFLRL 272
           +K +RLEE+ Q++ WGLVEGGHDIDVADLK ++++A+VFL L
Sbjct: 280 IKLIRLEEDLQVDKWGLVEGGHDIDVADLKVQISSATVFLAL 321



 Score = 37.0 bits (84), Expect = 0.49
 Identities = 27/88 (30%), Positives = 39/88 (44%)
 Frame = +2

Query: 2   DEVVNALERALKNTNDWQLAAIDXXXXXXXXXXXXXXXYRGRLGIEDATQVIAARRGISD 181
           D++V A+E  LK TND +LA+ID               + G+L I+DA ++I     +  
Sbjct: 232 DKLVKAVEELLKKTNDGELASIDALQASAHSIVIALGIFCGKLQIDDAIKLIRLEEDLQV 291

Query: 182 RSLGAC*RWS*Y*CSRLKVQGGSCLCFL 265
              G          + LKVQ  S   FL
Sbjct: 292 DKWGLVEGGHDIDVADLKVQISSATVFL 319


>tr|A7PLW7|A7PLW7_VITVI Chromosome chr14 scaffold_21, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00020592001
           PE=4 SV=1
          Length = 328

 Score = 59.3 bits (142), Expect = 9e-08
 Identities = 24/39 (61%), Positives = 34/39 (87%)
 Frame = +3

Query: 156 LRLEEEFQIEAWGLVEGGHDIDVADLKCRVAAASVFLRL 272
           +RLEE+ Q++ WGLVEGGHD+DVADLK ++++A+ FL L
Sbjct: 286 IRLEEDLQVDKWGLVEGGHDVDVADLKVQISSAAAFLGL 324



 Score = 41.2 bits (95), Expect = 0.026
 Identities = 29/88 (32%), Positives = 40/88 (45%)
 Frame = +2

Query: 2   DEVVNALERALKNTNDWQLAAIDXXXXXXXXXXXXXXXYRGRLGIEDATQVIAARRGISD 181
           D +VNA+E  LK T+D +LAAID               +RG+L IE+A ++I     +  
Sbjct: 235 DGLVNAIENLLKKTDDCELAAIDAIASAAHSLTIAIGIFRGKLQIEEAIELIRLEEDLQV 294

Query: 182 RSLGAC*RWS*Y*CSRLKVQGGSCLCFL 265
              G          + LKVQ  S   FL
Sbjct: 295 DKWGLVEGGHDVDVADLKVQISSAAAFL 322


>tr|B6TXI2|B6TXI2_MAIZE ATP12 ATPase OS=Zea mays PE=2 SV=1
          Length = 318

 Score = 58.2 bits (139), Expect = 2e-07
 Identities = 24/39 (61%), Positives = 34/39 (87%)
 Frame = +3

Query: 156 LRLEEEFQIEAWGLVEGGHDIDVADLKCRVAAASVFLRL 272
           +RLEE+ Q++ WGLVEGGHD+D+ADLK ++++A VFL L
Sbjct: 276 IRLEEDHQVDRWGLVEGGHDVDIADLKVQMSSAVVFLGL 314


>tr|B6T754|B6T754_MAIZE ATP12 ATPase OS=Zea mays PE=2 SV=1
          Length = 318

 Score = 58.2 bits (139), Expect = 2e-07
 Identities = 24/39 (61%), Positives = 34/39 (87%)
 Frame = +3

Query: 156 LRLEEEFQIEAWGLVEGGHDIDVADLKCRVAAASVFLRL 272
           +RLEE+ Q++ WGLVEGGHD+D+ADLK ++++A VFL L
Sbjct: 276 IRLEEDHQVDRWGLVEGGHDVDIADLKVQMSSAVVFLGL 314