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NBDC - LSDB Archive
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BP917141
Clone id YMU001_000096_F02
Library
Length 509
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000096_F02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTGGAAGAATTCGCGGCCGCGAATCCGGATCCTTACCTCTTCGTCGCCGTCTCCGAATAC
TCGACTGTAACTCTTAGAGTCAACCTCTAACTGGCATACCAATGCCCTGAAAGAGATCGC
ACTTCTGCAATATCAGGTACTCTCTAAGCTTTCTCTTACCACTTCCCACATCTTTTTTCT
CCGGGGGGTGTGTACATCTCCTTCCGACAAAGGCAAAGACCCAGTAAGTGATATGCAGCA
GACAGCTTTGCAACAAGCCATTAATTTTGGTGGTGGCTTGCAACATAAAGATTTTCCTCG
CATGTTTTCCAGTGTTAAAAGAACCTGTGATTACTTCTGTCTTTAGCTTCCCTCCAGATA
TGTCACCTTTTATGGCAGAAGACATTATAGATGGGTTTAATCCCTATTACCGTTGGGAAA
GAAATGATGAAATACAACCATGGCAACAAAGGCAAGCAATGGGAGAAGTAGTCAGAACCA
TTCTACCTGAAGACATGCAATGGACAGTT
■■Homology search results ■■ -
sp_hit_id O75690
Definition sp|O75690|KRA58_HUMAN Keratin-associated protein 5-8 OS=Homo sapiens
Align length 26
Score (bit) 32.0
E-value 1.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917141|Adiantum capillus-veneris mRNA, clone:
YMU001_000096_F02.
         (485 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O75690|KRA58_HUMAN Keratin-associated protein 5-8 OS=Homo sap...    32   1.5  
sp|Q6L8H2|KRA53_HUMAN Keratin-associated protein 5-3 OS=Homo sap...    32   1.5  
sp|Q2TA51|KRA55_MOUSE Keratin associated protein 5-5 OS=Mus musc...    31   2.6  
sp|Q6L8G8|KRA57_HUMAN Keratin-associated protein 5-7 OS=Homo sap...    31   3.4  
sp|Q9BYQ5|KRA46_HUMAN Keratin-associated protein 4-6 OS=Homo sap...    30   4.4  
sp|Q9BYR4|KRA43_HUMAN Keratin-associated protein 4-3 OS=Homo sap...    30   4.4  
sp|A2A5X5|KR10D_MOUSE Putative keratin-associated protein 10-lik...    30   4.4  
sp|P60368|KR102_HUMAN Keratin-associated protein 10-2 OS=Homo sa...    30   4.4  
sp|P60369|KR103_HUMAN Keratin-associated protein 10-3 OS=Homo sa...    30   5.7  
sp|A0JZ92|RPOC_ARTS2 DNA-directed RNA polymerase subunit beta' O...    30   7.5  
sp|O54728|PLB1_RAT Phospholipase B1, membrane-associated OS=Ratt...    30   7.5  
sp|P60372|KR104_HUMAN Keratin-associated protein 10-4 OS=Homo sa...    30   7.5  
sp|Q9BYR0|KRA47_HUMAN Keratin-associated protein 4-7 OS=Homo sap...    29   9.8  
sp|A8MTL4|KR41X_HUMAN Putative keratin-associated protein 4-X OS...    29   9.8  
sp|Q9BYQ6|KR411_HUMAN Keratin-associated protein 4-11 OS=Homo sa...    29   9.8  
sp|P60371|KR106_HUMAN Keratin-associated protein 10-6 OS=Homo sa...    29   9.8  
sp|Q28292|IL1B_CANFA Interleukin-1 beta OS=Canis familiaris GN=I...    29   9.8  
sp|Q90399|EPD_DANAE Ependymin OS=Danio aequipinnatus GN=epd PE=3...    29   9.8  
sp|Q5XIX3|DCR1C_RAT Protein artemis OS=Rattus norvegicus GN=Dclr...    29   9.8  
sp|Q8K4J0|DCR1C_MOUSE Protein artemis OS=Mus musculus GN=Dclre1c...    29   9.8  
sp|P26371|KRA59_HUMAN Keratin-associated protein 5-9 OS=Homo sap...    25   10.0 

>sp|O75690|KRA58_HUMAN Keratin-associated protein 5-8 OS=Homo
           sapiens GN=KRTAP5-8 PE=2 SV=2
          Length = 187

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -3

Query: 270 KSLCCKPPPKLMACCKAVCCISLTGS 193
           +S CCKP     +CCK  CC S  GS
Sbjct: 135 QSSCCKPCCSQSSCCKPCCCSSGCGS 160


>sp|Q6L8H2|KRA53_HUMAN Keratin-associated protein 5-3 OS=Homo
           sapiens GN=KRTAP5-3 PE=2 SV=1
          Length = 238

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -3

Query: 270 KSLCCKPPPKLMACCKAVCCISLTGS 193
           +S CCKP     +CCK  CC S  GS
Sbjct: 157 QSSCCKPCCSQSSCCKPCCCSSGCGS 182



 Score = 32.0 bits (71), Expect = 1.5
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -3

Query: 270 KSLCCKPPPKLMACCKAVCCISLTGS 193
           +S CCKP     +CCK  CC S  GS
Sbjct: 186 QSSCCKPCCSQSSCCKPCCCSSGCGS 211


>sp|Q2TA51|KRA55_MOUSE Keratin associated protein 5-5 OS=Mus
           musculus GN=Krtap5-5 PE=2 SV=1
          Length = 241

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -3

Query: 273 GKSLCCKPPPKLMACCKAVCC 211
           G S CCKP    + CCK VCC
Sbjct: 31  GSSCCCKP----VCCCKPVCC 47


>sp|Q6L8G8|KRA57_HUMAN Keratin-associated protein 5-7 OS=Homo
           sapiens GN=KRTAP5-7 PE=2 SV=1
          Length = 165

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -3

Query: 270 KSLCCKPPPKLMACCKAVCCISLTGS 193
           +S CCKP     +CCK  CC S  GS
Sbjct: 113 QSSCCKPCCCQSSCCKPCCCSSGCGS 138


>sp|Q9BYQ5|KRA46_HUMAN Keratin-associated protein 4-6 OS=Homo
           sapiens GN=KRTAP4-6 PE=2 SV=2
          Length = 205

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 261 CCKPPPKLMACCKAVCCIS 205
           CC+P   + +CC+  CC+S
Sbjct: 104 CCRPSCSISSCCRPSCCVS 122


>sp|Q9BYR4|KRA43_HUMAN Keratin-associated protein 4-3 OS=Homo
           sapiens GN=KRTAP4-3 PE=2 SV=2
          Length = 195

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 270 KSLCCKPPPKLMACCKAVCCIS 205
           ++ CC+P   + +CC+  CCIS
Sbjct: 36  RTTCCRPSCCISSCCRPSCCIS 57



 Score = 30.4 bits (67), Expect = 4.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 270 KSLCCKPPPKLMACCKAVCCIS 205
           ++ CC+P   + +CC+  CCIS
Sbjct: 66  RTTCCRPSCCISSCCRPSCCIS 87



 Score = 30.4 bits (67), Expect = 4.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 270 KSLCCKPPPKLMACCKAVCCIS 205
           ++ CC+P   + +CC+  CCIS
Sbjct: 96  RTTCCRPSCCISSCCRPSCCIS 117



 Score = 29.6 bits (65), Expect = 7.5
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -3

Query: 267 SLCCKPPPKLMACCKAVCCIS 205
           S CCKP      CC+  CCIS
Sbjct: 57  SSCCKPSCCRTTCCRPSCCIS 77



 Score = 29.6 bits (65), Expect = 7.5
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -3

Query: 267 SLCCKPPPKLMACCKAVCCIS 205
           S CCKP      CC+  CCIS
Sbjct: 87  SSCCKPSCCRTTCCRPSCCIS 107



 Score = 29.6 bits (65), Expect = 7.5
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -3

Query: 267 SLCCKPPPKLMACCKAVCCIS 205
           S CCKP      CC+  CCIS
Sbjct: 117 SSCCKPSCCQTTCCRPSCCIS 137


>sp|A2A5X5|KR10D_MOUSE Putative keratin-associated protein 10-like
           ENSP00000375147 homolog OS=Mus musculus PE=3 SV=1
          Length = 502

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
 Frame = -3

Query: 297 LLTLENMRGKS----LCCKPPPKLMACCKAVCC 211
           L+T E+  G S     CC+P   + +CC+ VCC
Sbjct: 42  LVTCEDSCGSSGCGSQCCQPSCSVSSCCQPVCC 74


>sp|P60368|KR102_HUMAN Keratin-associated protein 10-2 OS=Homo
           sapiens GN=KRTAP10-2 PE=2 SV=1
          Length = 255

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 267 SLCCKPPPKLMACCKAVCCI 208
           S+CCKP      CCK++CC+
Sbjct: 185 SVCCKP-----VCCKSICCV 199


>sp|P60369|KR103_HUMAN Keratin-associated protein 10-3 OS=Homo
           sapiens GN=KRTAP10-3 PE=1 SV=2
          Length = 221

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 264 LCCKPPPKLMACCKAVCC 211
           +CCKP   +  CCK VCC
Sbjct: 103 VCCKPVCCVPVCCKPVCC 120


>sp|A0JZ92|RPOC_ARTS2 DNA-directed RNA polymerase subunit beta'
           OS=Arthrobacter sp. (strain FB24) GN=rpoC PE=3 SV=1
          Length = 1299

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
 Frame = +3

Query: 363 IDGFNPYYRWERNDEIQPWQQ---RQAMGEVV-RTILPEDMQW 479
           ++GF PY  WE  +  +P Q    + ++G+V+    LPED  W
Sbjct: 627 LEGFVPYAGWEAPEGWEPGQTALVQTSLGQVIFNQTLPEDYPW 669
tr_hit_id Q8MT70
Definition tr|Q8MT70|Q8MT70_DROME LP10412p OS=Drosophila melanogaster
Align length 48
Score (bit) 36.2
E-value 0.82
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917141|Adiantum capillus-veneris mRNA, clone:
YMU001_000096_F02.
         (485 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q8MT70|Q8MT70_DROME LP10412p OS=Drosophila melanogaster GN=Ax...    36   0.82 
tr|O97132|O97132_DROME Abnormal X segregation, isoform A OS=Dros...    36   0.82 
tr|B6UVF7|B6UVF7_DROME Abnormal X segregation (Fragment) OS=Dros...    36   0.82 
tr|B6UVF6|B6UVF6_DROME Abnormal X segregation (Fragment) OS=Dros...    36   0.82 
tr|B6UVF1|B6UVF1_DROSI Abnormal X segregation (Fragment) OS=Dros...    36   0.82 
tr|B6UVF0|B6UVF0_DROSI Abnormal X segregation (Fragment) OS=Dros...    36   0.82 
tr|B6UVE9|B6UVE9_DROYA Abnormal X segregation (Fragment) OS=Dros...    36   0.82 
tr|B4R610|B4R610_DROSI GD15734 OS=Drosophila simulans GN=GD15734...    36   0.82 
tr|B4Q1T3|B4Q1T3_DROYA GE15653 OS=Drosophila yakuba GN=GE15653 P...    36   0.82 
tr|B4IER4|B4IER4_DROSE GM13377 OS=Drosophila sechellia GN=GM1337...    36   0.82 
tr|B3NVK9|B3NVK9_DROER GG18235 OS=Drosophila erecta GN=GG18235 P...    36   0.82 
tr|Q29GT2|Q29GT2_DROPS GA21976 OS=Drosophila pseudoobscura pseud...    36   1.1  
tr|B4GUW9|B4GUW9_DROPE GL12944 OS=Drosophila persimilis GN=GL129...    36   1.1  
tr|B2J0I1|B2J0I1_NOSP7 Toll-interleukin receptor OS=Nostoc punct...    35   1.4  
tr|B6UVF5|B6UVF5_DROSI Abnormal X segregation (Fragment) OS=Dros...    35   1.4  
tr|A6F2P9|A6F2P9_9ALTE Putative uncharacterized protein OS=Marin...    35   1.8  
tr|A5PC00|A5PC00_9SPHN Predicted phosphatase OS=Erythrobacter sp...    35   1.8  
tr|B4MSC6|B4MSC6_DROWI GK19948 OS=Drosophila willistoni GN=GK199...    35   1.8  
tr|A5UKZ8|A5UKZ8_METS3 Cell division control protein Cdc6-relate...    35   1.8  
tr|Q7MS61|Q7MS61_WOLSU Putative uncharacterized protein OS=Wolin...    35   2.4  
tr|B4M2A6|B4M2A6_DROVI GJ19453 OS=Drosophila virilis GN=GJ19453 ...    34   4.1  
tr|Q07WX2|Q07WX2_SHEFN CutA1 divalent ion tolerance protein OS=S...    33   7.0  
tr|Q4QGG7|Q4QGG7_LEIMA Putative uncharacterized protein OS=Leish...    33   7.0  
tr|B4L1V1|B4L1V1_DROMO GI15349 OS=Drosophila mojavensis GN=GI153...    33   7.0  
tr|A7E345|A7E345_BOVIN KRTAP4-7 protein OS=Bos taurus GN=KRTAP4-...    30   7.5  
tr|Q4K5H8|Q4K5H8_PSEF5 Putative uncharacterized protein OS=Pseud...    33   9.1  
tr|A9VGH0|A9VGH0_BACWK Aldehyde dehydrogenase OS=Bacillus weihen...    33   9.1  
tr|Q9VM92|Q9VM92_DROME CG11201 OS=Drosophila melanogaster GN=CG1...    33   9.1  
tr|Q29P17|Q29P17_DROPS GA10836 OS=Drosophila pseudoobscura pseud...    33   9.1  
tr|B4Q512|B4Q512_DROSI GD23429 OS=Drosophila simulans GN=GD23429...    33   9.1  

>tr|Q8MT70|Q8MT70_DROME LP10412p OS=Drosophila melanogaster GN=Axs
           PE=2 SV=1
          Length = 372

 Score = 36.2 bits (82), Expect = 0.82
 Identities = 18/48 (37%), Positives = 28/48 (58%)
 Frame = -1

Query: 485 NCPLHVFR*NGSDYFSHCLPLLPWLYFIISFPTVIGIKPIYNVFCHKR 342
           NC L   + N  D+FSH LP +P L F+I    ++G+K + +   H+R
Sbjct: 292 NCGLLFLQPNVKDFFSHWLPSVPDLSFVIFEHLLLGLKFLIHKVIHER 339


>tr|O97132|O97132_DROME Abnormal X segregation, isoform A
           OS=Drosophila melanogaster GN=Axs PE=2 SV=1
          Length = 646

 Score = 36.2 bits (82), Expect = 0.82
 Identities = 18/48 (37%), Positives = 28/48 (58%)
 Frame = -1

Query: 485 NCPLHVFR*NGSDYFSHCLPLLPWLYFIISFPTVIGIKPIYNVFCHKR 342
           NC L   + N  D+FSH LP +P L F+I    ++G+K + +   H+R
Sbjct: 566 NCGLLFLQPNVKDFFSHWLPSVPDLSFVIFEHLLLGLKFLIHKVIHER 613


>tr|B6UVF7|B6UVF7_DROME Abnormal X segregation (Fragment)
           OS=Drosophila melanogaster GN=Axs PE=4 SV=1
          Length = 369

 Score = 36.2 bits (82), Expect = 0.82
 Identities = 18/48 (37%), Positives = 28/48 (58%)
 Frame = -1

Query: 485 NCPLHVFR*NGSDYFSHCLPLLPWLYFIISFPTVIGIKPIYNVFCHKR 342
           NC L   + N  D+FSH LP +P L F+I    ++G+K + +   H+R
Sbjct: 313 NCGLLFLQPNVKDFFSHWLPSVPDLSFVIFEHLLLGLKFLIHKVIHER 360


>tr|B6UVF6|B6UVF6_DROME Abnormal X segregation (Fragment)
           OS=Drosophila melanogaster GN=Axs PE=4 SV=1
          Length = 369

 Score = 36.2 bits (82), Expect = 0.82
 Identities = 18/48 (37%), Positives = 28/48 (58%)
 Frame = -1

Query: 485 NCPLHVFR*NGSDYFSHCLPLLPWLYFIISFPTVIGIKPIYNVFCHKR 342
           NC L   + N  D+FSH LP +P L F+I    ++G+K + +   H+R
Sbjct: 313 NCGLLFLQPNVKDFFSHWLPSVPDLSFVIFEHLLLGLKFLIHKVIHER 360


>tr|B6UVF1|B6UVF1_DROSI Abnormal X segregation (Fragment)
           OS=Drosophila simulans GN=Axs PE=4 SV=1
          Length = 369

 Score = 36.2 bits (82), Expect = 0.82
 Identities = 18/48 (37%), Positives = 28/48 (58%)
 Frame = -1

Query: 485 NCPLHVFR*NGSDYFSHCLPLLPWLYFIISFPTVIGIKPIYNVFCHKR 342
           NC L   + N  D+FSH LP +P L F+I    ++G+K + +   H+R
Sbjct: 313 NCGLLFLQPNVKDFFSHWLPSVPDLSFVIFEHLLLGLKFLIHKVIHER 360


>tr|B6UVF0|B6UVF0_DROSI Abnormal X segregation (Fragment)
           OS=Drosophila simulans GN=Axs PE=4 SV=1
          Length = 369

 Score = 36.2 bits (82), Expect = 0.82
 Identities = 18/48 (37%), Positives = 28/48 (58%)
 Frame = -1

Query: 485 NCPLHVFR*NGSDYFSHCLPLLPWLYFIISFPTVIGIKPIYNVFCHKR 342
           NC L   + N  D+FSH LP +P L F+I    ++G+K + +   H+R
Sbjct: 313 NCGLLFLQPNVKDFFSHWLPSVPDLSFVIFEHLLLGLKFLIHKVIHER 360


>tr|B6UVE9|B6UVE9_DROYA Abnormal X segregation (Fragment)
           OS=Drosophila yakuba GN=Axs PE=4 SV=1
          Length = 369

 Score = 36.2 bits (82), Expect = 0.82
 Identities = 18/48 (37%), Positives = 28/48 (58%)
 Frame = -1

Query: 485 NCPLHVFR*NGSDYFSHCLPLLPWLYFIISFPTVIGIKPIYNVFCHKR 342
           NC L   + N  D+FSH LP +P L F+I    ++G+K + +   H+R
Sbjct: 313 NCGLLFLQPNVKDFFSHWLPSVPDLSFVIFEHLLLGLKFLIHKVIHER 360


>tr|B4R610|B4R610_DROSI GD15734 OS=Drosophila simulans GN=GD15734
           PE=4 SV=1
          Length = 646

 Score = 36.2 bits (82), Expect = 0.82
 Identities = 18/48 (37%), Positives = 28/48 (58%)
 Frame = -1

Query: 485 NCPLHVFR*NGSDYFSHCLPLLPWLYFIISFPTVIGIKPIYNVFCHKR 342
           NC L   + N  D+FSH LP +P L F+I    ++G+K + +   H+R
Sbjct: 566 NCGLLFLQPNVKDFFSHWLPSVPDLSFVIFEHLLLGLKFLIHKVIHER 613


>tr|B4Q1T3|B4Q1T3_DROYA GE15653 OS=Drosophila yakuba GN=GE15653 PE=4
           SV=1
          Length = 646

 Score = 36.2 bits (82), Expect = 0.82
 Identities = 18/48 (37%), Positives = 28/48 (58%)
 Frame = -1

Query: 485 NCPLHVFR*NGSDYFSHCLPLLPWLYFIISFPTVIGIKPIYNVFCHKR 342
           NC L   + N  D+FSH LP +P L F+I    ++G+K + +   H+R
Sbjct: 566 NCGLLFLQPNVKDFFSHWLPSVPDLSFVIFEHLLLGLKFLIHKVIHER 613


>tr|B4IER4|B4IER4_DROSE GM13377 OS=Drosophila sechellia GN=GM13377
           PE=4 SV=1
          Length = 646

 Score = 36.2 bits (82), Expect = 0.82
 Identities = 18/48 (37%), Positives = 28/48 (58%)
 Frame = -1

Query: 485 NCPLHVFR*NGSDYFSHCLPLLPWLYFIISFPTVIGIKPIYNVFCHKR 342
           NC L   + N  D+FSH LP +P L F+I    ++G+K + +   H+R
Sbjct: 566 NCGLLFLQPNVKDFFSHWLPSVPDLSFVIFEHLLLGLKFLIHKVIHER 613