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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917150
Clone id YMU001_000096_G04
Library
Length 407
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000096_G04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GCTTCCTCTCTCTGGGACCTTGTTAACTTGGCGCTAGGAACAACTCCCATAACTTGCCCT
TCCTTCCCTAACCCAGAATCTTTGCACTTGCGCACAACCTTCTCTTCAGTCCTTGAAGGG
TGGTTTAACACATCACGATCTTCTTGAGCACCATCAAGGACAAAATTTTCCTTACTTGAT
TTGGCTCTCTTTGACCTGTGCTCTTTATGGTCTTCTTTATGTGGAACAGTACTAGGGCTT
CGGGCATGCTTTTGGAGCACATCAGCACCATAGCAATGGCTGCTGCCACGTTGACCATTC
AAAAAGCTACCACTACTGTCACTCTGAGAGCCCTCTCCATCCTTTGACCTATGAACCGCC
TCTCTTGACTTCCCCTTGCTTGACGATTTAGAGCTCGAATGACTTCT
■■Homology search results ■■ -
sp_hit_id Q8BI67
Definition sp|Q8BI67|ZN473_MOUSE Zinc finger protein 473 homolog OS=Mus musculus
Align length 92
Score (bit) 36.2
E-value 0.051
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917150|Adiantum capillus-veneris mRNA, clone:
YMU001_000096_G04.
         (407 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8BI67|ZN473_MOUSE Zinc finger protein 473 homolog OS=Mus mus...    36   0.051
sp|Q8TD26|CHD6_HUMAN Chromodomain-helicase-DNA-binding protein 6...    32   0.97 
sp|Q09221|TG308_CAEEL Putative protein tag-308 OS=Caenorhabditis...    32   1.3  
sp|Q10195|YBY6_SCHPO Uncharacterized protein C11C11.06c OS=Schiz...    30   2.8  
sp|Q03DX9|RPOE_PEDPA Probable DNA-directed RNA polymerase subuni...    30   2.8  
sp|Q7V9F9|RS6_PROMA 30S ribosomal protein S6 OS=Prochlorococcus ...    30   3.7  
sp|Q58618|Y1221_METJA Uncharacterized protein MJ1221 OS=Methanoc...    30   4.8  
sp|Q9Z2E2|MBD1_MOUSE Methyl-CpG-binding domain protein 1 OS=Mus ...    29   6.3  
sp|Q84WP5|U497A_ARATH UPF0497 membrane protein At2g36330 OS=Arab...    29   8.2  
sp|Q9H2Y9|SO5A1_HUMAN Solute carrier organic anion transporter f...    29   8.2  
sp|Q9BTN0|LRFN3_HUMAN Leucine-rich repeat and fibronectin type-I...    29   8.2  
sp|Q8IW19|APLF_HUMAN Aprataxin and PNK-like factor OS=Homo sapie...    29   8.2  

>sp|Q8BI67|ZN473_MOUSE Zinc finger protein 473 homolog OS=Mus
           musculus GN=Znf473 PE=2 SV=1
          Length = 892

 Score = 36.2 bits (82), Expect = 0.051
 Identities = 27/92 (29%), Positives = 37/92 (40%), Gaps = 5/92 (5%)
 Frame = -1

Query: 305 FLNGQRGSSHCYGADVLQKHARSPSTVPH-----KEDHKEHRSKRAKSSKENFVLDGAQE 141
           F NGQ     C G D L      P ++P      KE   +H+S  +KS          +E
Sbjct: 113 FSNGQLNFEACIGEDWLNSFLGDPESLPRPDISDKESPADHQSPESKSGLSPGPPLCTRE 172

Query: 140 DRDVLNHPSRTEEKVVRKCKDSGLGKEGQVMG 45
           D  +   P +T   V+ K   S L +E  V G
Sbjct: 173 DAVMSASPEKTLTPVILKESRSDLSQEDSVQG 204


>sp|Q8TD26|CHD6_HUMAN Chromodomain-helicase-DNA-binding protein 6
           OS=Homo sapiens GN=CHD6 PE=1 SV=3
          Length = 2715

 Score = 32.0 bits (71), Expect = 0.97
 Identities = 23/75 (30%), Positives = 30/75 (40%), Gaps = 4/75 (5%)
 Frame = -1

Query: 218 KEDHKEHRSKRAKSSKENFVLDGAQEDRDVLNHPSRTEEKVVRKCKDSGL----GKEGQV 51
           KE  K    K+AK  KE    DGA++ R         E K  R C DS       K  + 
Sbjct: 128 KEPRKAEEPKKAKEHKEPKQKDGAKKARKPREASGTKEAKEKRSCTDSAARTKSRKASKE 187

Query: 50  MGVVPSAKLTRSQRE 6
            G  P  K  + +R+
Sbjct: 188 QGPTPVEKKKKGKRK 202


>sp|Q09221|TG308_CAEEL Putative protein tag-308 OS=Caenorhabditis
            elegans GN=tag-308 PE=2 SV=3
          Length = 7548

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 20/54 (37%), Positives = 28/54 (51%)
 Frame = -1

Query: 239  SPSTVPHKEDHKEHRSKRAKSSKENFVLDGAQEDRDVLNHPSRTEEKVVRKCKD 78
            S S V  +E  KEH SK+  SS+E  +    + +RD        EE+VV+  KD
Sbjct: 1717 SVSGVMKRESRKEHSSKKFTSSREEIIQGFWKGERD--------EERVVKTLKD 1762


>sp|Q10195|YBY6_SCHPO Uncharacterized protein C11C11.06c
           OS=Schizosaccharomyces pombe GN=SPBC11C11.06c PE=2 SV=1
          Length = 178

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
 Frame = -1

Query: 302 LNGQRGSSHCYGADVLQKHA----RSPSTVPHKEDHKEHRSKRAKSSKEN-FVLDGAQED 138
           ++ + GSSH   A+++++HA     +    P   + +E  S+      E   VLD  +ED
Sbjct: 1   MSAKEGSSHPSYAEIVREHAPEQTAAEKAAPQPPEVEEVLSEEPYQKNEKVVVLD--EED 58

Query: 137 RDVLNHPSRTEEKVVRKCKDSGLGKEGQVMG 45
            D   HP   E K     K+S    +G+  G
Sbjct: 59  ADAFLHPEEAEAK-----KESEKPSDGEKKG 84


>sp|Q03DX9|RPOE_PEDPA Probable DNA-directed RNA polymerase subunit
           delta OS=Pediococcus pentosaceus (strain ATCC 25745 /
           183-1w) GN=rpoE PE=3 SV=1
          Length = 178

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = -1

Query: 221 HKEDHKEHRSKRAKSSKENFVLDGAQEDRDVLNHPSRTEEKVVRKCKDS 75
           H ED  E R  R K  K N  L  A +D DV+++ S   E    + +D+
Sbjct: 93  HAEDEDEDRPVRKKRKKVNAFLADAADDDDVIDYDSDDPEDEEVEAEDT 141


>sp|Q7V9F9|RS6_PROMA 30S ribosomal protein S6 OS=Prochlorococcus
           marinus GN=rpsF PE=3 SV=1
          Length = 210

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 25/83 (30%), Positives = 37/83 (44%)
 Frame = -1

Query: 251 KHARSPSTVPHKEDHKEHRSKRAKSSKENFVLDGAQEDRDVLNHPSRTEEKVVRKCKDSG 72
           K A+    V   +D KE   K AK +KE       +E +D        + K V++ KD+ 
Sbjct: 135 KEAKDTKEVKEAKDTKE--VKEAKDTKE------VKEAKDTKEVKEAKDTKEVKEAKDTK 186

Query: 71  LGKEGQVMGVVPSAKLTRSQREE 3
             KE +    V  AK T+  +EE
Sbjct: 187 EVKEAKDTKEVKEAKDTKEVKEE 209


>sp|Q58618|Y1221_METJA Uncharacterized protein MJ1221
           OS=Methanocaldococcus jannaschii GN=MJ1221 PE=4 SV=1
          Length = 299

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = -1

Query: 125 NHPSRTEEKVVRKCKDSGLGKEGQVMGVVPSAKLTRSQREE 3
           N  +R  EK+V + K  GLG++G     +  A +T S REE
Sbjct: 53  NADARDAEKIVLELKKLGLGEKGHGSVTIMPANITFSCREE 93


>sp|Q9Z2E2|MBD1_MOUSE Methyl-CpG-binding domain protein 1 OS=Mus
           musculus GN=Mbd1 PE=1 SV=2
          Length = 636

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
 Frame = -1

Query: 296 GQRGSSHCYGADVLQKHARSPSTVPH-----KEDHKEHRSKRAKSSKENFVLDGAQEDRD 132
           G+R SS        Q+H+++P   PH      E  + H S  A +S   F+     ED D
Sbjct: 283 GKRDSSKRGSKVASQRHSQAPPLPPHPASQYTEPTELHISDIAPTSPAEFIYYCVDEDED 342

Query: 131 VLNHPSRTEEKVVRKC 84
            L     T ++  RKC
Sbjct: 343 ELQ--PYTNQRQNRKC 356


>sp|Q84WP5|U497A_ARATH UPF0497 membrane protein At2g36330
           OS=Arabidopsis thaliana GN=At2g36330 PE=1 SV=1
          Length = 283

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 10/92 (10%)
 Frame = -1

Query: 248 HARSPSTVPHKEDHKEHRSKRAKSSKENFVLD---GAQEDRD----VLNHPSRTEEKVVR 90
           H  S  + PH  DH     K    SK     +   G  E+      V+++ +R+ ++VV 
Sbjct: 40  HFSSSPSPPHSLDHSSESEKEDAKSKPESRRNKNPGKVEETPSPIVVVHNHNRSVKEVVP 99

Query: 89  KCKDSGLG---KEGQVMGVVPSAKLTRSQREE 3
             K + +G     GQ  G V SA L RS+REE
Sbjct: 100 TRKSARVGSGRSSGQRSGAV-SAILRRSRREE 130


>sp|Q9H2Y9|SO5A1_HUMAN Solute carrier organic anion transporter
           family member 5A1 OS=Homo sapiens GN=SLCO5A1 PE=2 SV=1
          Length = 848

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -1

Query: 191 KRAKSSKENFVLDGAQEDRDVLNHPSRTEEKVVRKCKDSGLGKE 60
           +  K  K+ F +D   +D DVL   S   E+  +K    G GK+
Sbjct: 375 RHKKKKKKKFSVDAVSDD-DVLKEKSNNSEQADKKVSSMGFGKD 417
tr_hit_id B0WBW3
Definition tr|B0WBW3|B0WBW3_CULQU Putative uncharacterized protein OS=Culex quinquefasciatus
Align length 75
Score (bit) 37.4
E-value 0.38
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917150|Adiantum capillus-veneris mRNA, clone:
YMU001_000096_G04.
         (407 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B0WBW3|B0WBW3_CULQU Putative uncharacterized protein OS=Culex...    37   0.38 
tr|B6NXK9|B6NXK9_BRAFL Putative uncharacterized protein (Fragmen...    37   0.65 
tr|Q69ZQ9|Q69ZQ9_MOUSE MKIAA1141 protein (Fragment) OS=Mus muscu...    36   0.85 
tr|Q4VA40|Q4VA40_MOUSE Zfp473 protein OS=Mus musculus GN=Zfp473 ...    36   0.85 
tr|B6NXJ4|B6NXJ4_BRAFL Putative uncharacterized protein OS=Branc...    35   1.9  
tr|Q699W7|Q699W7_SIVCZ Pol protein (Fragment) OS=Simian immunode...    35   2.5  
tr|B3NV36|B3NV36_DROER GG18754 OS=Drosophila erecta GN=GG18754 P...    35   2.5  
tr|A5K1X7|A5K1X7_PLAVI Putative uncharacterized protein OS=Plasm...    34   3.2  
tr|B4DR09|B4DR09_HUMAN cDNA FLJ56827, highly similar to Solute c...    34   3.2  
tr|A4QPC2|A4QPC2_HUMAN SLCO5A1 protein OS=Homo sapiens GN=SLCO5A...    34   3.2  
tr|A0D4E6|A0D4E6_PARTE Chromosome undetermined scaffold_37, whol...    33   5.5  
tr|Q675R1|Q675R1_OIKDI Putative uncharacterized protein OS=Oikop...    33   9.4  
tr|B4R4T0|B4R4T0_DROSI GD16724 OS=Drosophila simulans GN=GD16724...    33   9.4  
tr|B3NFM5|B3NFM5_DROER GG15028 OS=Drosophila erecta GN=GG15028 P...    33   9.4  

>tr|B0WBW3|B0WBW3_CULQU Putative uncharacterized protein OS=Culex
           quinquefasciatus GN=CpipJ_CPIJ004662 PE=4 SV=1
          Length = 1149

 Score = 37.4 bits (85), Expect = 0.38
 Identities = 18/75 (24%), Positives = 42/75 (56%)
 Frame = -1

Query: 227 VPHKEDHKEHRSKRAKSSKENFVLDGAQEDRDVLNHPSRTEEKVVRKCKDSGLGKEGQVM 48
           VP KE+  + + K  K +K++ V++GA+E+ D      + +++ V K ++  L ++ + +
Sbjct: 422 VPTKEEESDTKKKNQKKTKKDTVVEGAEEECDQGESVVKAKKRRVEKVEEEPLEQQQETV 481

Query: 47  GVVPSAKLTRSQREE 3
             + + +  R + EE
Sbjct: 482 KNIVTVEKEREKEEE 496


>tr|B6NXK9|B6NXK9_BRAFL Putative uncharacterized protein (Fragment)
           OS=Branchiostoma floridae GN=BRAFLDRAFT_269557 PE=4 SV=1
          Length = 365

 Score = 36.6 bits (83), Expect = 0.65
 Identities = 21/71 (29%), Positives = 35/71 (49%)
 Frame = -1

Query: 263 DVLQKHARSPSTVPHKEDHKEHRSKRAKSSKENFVLDGAQEDRDVLNHPSRTEEKVVRKC 84
           D+ +K A        K++ +E   K+A+ S+ +F +DG ++D D  +     EE+V    
Sbjct: 119 DLAKKRAEVLERKEEKKERRERARKQAQLSQLSFAVDGEEDDEDDDDDEEEEEEEVQPVF 178

Query: 83  KDSGLGKEGQV 51
           K   LGK   V
Sbjct: 179 KKKKLGKNPDV 189


>tr|Q69ZQ9|Q69ZQ9_MOUSE MKIAA1141 protein (Fragment) OS=Mus musculus
           GN=Zfp473 PE=2 SV=1
          Length = 886

 Score = 36.2 bits (82), Expect = 0.85
 Identities = 27/92 (29%), Positives = 37/92 (40%), Gaps = 5/92 (5%)
 Frame = -1

Query: 305 FLNGQRGSSHCYGADVLQKHARSPSTVPH-----KEDHKEHRSKRAKSSKENFVLDGAQE 141
           F NGQ     C G D L      P ++P      KE   +H+S  +KS          +E
Sbjct: 107 FSNGQLNFEACIGEDWLNSFLGDPESLPRPDISDKESPADHQSPESKSGLSPGPPLCTRE 166

Query: 140 DRDVLNHPSRTEEKVVRKCKDSGLGKEGQVMG 45
           D  +   P +T   V+ K   S L +E  V G
Sbjct: 167 DAVMSASPEKTLTPVILKESRSDLSQEDSVQG 198


>tr|Q4VA40|Q4VA40_MOUSE Zfp473 protein OS=Mus musculus GN=Zfp473
           PE=2 SV=2
          Length = 891

 Score = 36.2 bits (82), Expect = 0.85
 Identities = 27/92 (29%), Positives = 37/92 (40%), Gaps = 5/92 (5%)
 Frame = -1

Query: 305 FLNGQRGSSHCYGADVLQKHARSPSTVPH-----KEDHKEHRSKRAKSSKENFVLDGAQE 141
           F NGQ     C G D L      P ++P      KE   +H+S  +KS          +E
Sbjct: 112 FSNGQLNFEACIGEDWLNSFLGDPESLPRPDISDKESPADHQSPESKSGLSPGPPLCTRE 171

Query: 140 DRDVLNHPSRTEEKVVRKCKDSGLGKEGQVMG 45
           D  +   P +T   V+ K   S L +E  V G
Sbjct: 172 DAVMSASPEKTLTPVILKESRSDLSQEDSVQG 203


>tr|B6NXJ4|B6NXJ4_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_100301 PE=4 SV=1
          Length = 1436

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 20/71 (28%), Positives = 35/71 (49%)
 Frame = -1

Query: 263 DVLQKHARSPSTVPHKEDHKEHRSKRAKSSKENFVLDGAQEDRDVLNHPSRTEEKVVRKC 84
           D+ +K A        K++ +E   K+A+ S+ +F +DG +++ D  +     EE+V    
Sbjct: 91  DLAKKRAEVLERKEEKKERRERARKQAQLSQLSFAVDGEEDEEDDDDDEEEEEEEVQPVF 150

Query: 83  KDSGLGKEGQV 51
           K   LGK   V
Sbjct: 151 KKKKLGKNPDV 161


>tr|Q699W7|Q699W7_SIVCZ Pol protein (Fragment) OS=Simian
           immunodeficiency virus (isolate CPZ GAB1) PE=4 SV=1
          Length = 1007

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 20/50 (40%), Positives = 25/50 (50%)
 Frame = -1

Query: 176 SKENFVLDGAQEDRDVLNHPSRTEEKVVRKCKDSGLGKEGQVMGVVPSAK 27
           SK N V D       +L HPS TE K+V K   +  GKE   +  VP+ K
Sbjct: 651 SKMNIVTDSQYALGIILEHPSETEHKIVEKVIQALQGKEQIYLAWVPAHK 700


>tr|B3NV36|B3NV36_DROER GG18754 OS=Drosophila erecta GN=GG18754 PE=4
           SV=1
          Length = 626

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = -1

Query: 257 LQKHARSPSTVPHKEDHKEHRSKRAKSSKENFVLDGAQEDR-DVLNHPSRTEEKVVRKCK 81
           L KH  +       E  KE  S++ KSS+++     ++ED+     H S + EK   K +
Sbjct: 295 LSKHLEADKDRRRLEQEKERESRKKKSSRQSLDKSSSKEDKPPAKEHKSSSREKSTPK-E 353

Query: 80  DSGLGKE 60
           D  LGKE
Sbjct: 354 DKHLGKE 360


>tr|A5K1X7|A5K1X7_PLAVI Putative uncharacterized protein
           OS=Plasmodium vivax GN=PVX_113825 PE=4 SV=1
          Length = 3996

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 17/49 (34%), Positives = 28/49 (57%)
 Frame = -1

Query: 278 HCYGADVLQKHARSPSTVPHKEDHKEHRSKRAKSSKENFVLDGAQEDRD 132
           HC G  + +KH+       H   HK+ + + A S+KEN+  D A+E+R+
Sbjct: 757 HCLGRSLKRKHSLGEEKSAHGCTHKQIK-RDAVSAKENYTHDKAEENRE 804


>tr|B4DR09|B4DR09_HUMAN cDNA FLJ56827, highly similar to Solute
           carrier organic anion transporter family member 5A1
           OS=Homo sapiens PE=2 SV=1
          Length = 486

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = -1

Query: 191 KRAKSSKENFVLDGAQEDRDVLNHPSRTEEKVVRKCKDSGLGKEGQVMGVVPSA 30
           +  K  K+ F +D   +D DVL   S   E+  +K    G GK+ + + +VPSA
Sbjct: 375 RHKKKKKKKFSVDAVSDD-DVLKEKSNNSEQADKKVSSMGFGKDVRGVIIVPSA 427


>tr|A4QPC2|A4QPC2_HUMAN SLCO5A1 protein OS=Homo sapiens GN=SLCO5A1
           PE=2 SV=1
          Length = 793

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = -1

Query: 191 KRAKSSKENFVLDGAQEDRDVLNHPSRTEEKVVRKCKDSGLGKEGQVMGVVPSA 30
           +  K  K+ F +D   +D DVL   S   E+  +K    G GK+ + + +VPSA
Sbjct: 375 RHKKKKKKKFSVDAVSDD-DVLKEKSNNSEQADKKVSSMGFGKDVRGVIIVPSA 427