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NBDC - LSDB Archive
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BP917155
Clone id YMU001_000096_H10
Library
Length 305
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000096_H10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TCTGTCCGTGTGGCGCCTCGGACAACATCTACATGTAAACAACAATACAGACCTTTGCTT
TCACAAAGCTTTGGGTTCAATGGCATTGCAAGGACTTCATGAATGCAAGAACTCTTTATC
TCTGAACTACTTGTTGAAAAGGCAGAACGCTCACCGGCTTAACATCTCAGAACCCCCCTC
GCAAGATCCTTTTTCTCACCCACTTCACAACATCTCAGAACCCCCCTCACAAGATCTGTA
CTCACCCTCTTCACGCCTCTAGTACCCTCAAGCATAGTCTTCCTATCTCGATTCCATTGA
GGATA
■■Homology search results ■■ -
sp_hit_id Q9HE02
Definition sp|Q9HE02|SSN2_SCHPO Mediator of RNA polymerase II transcription subunit 13 OS=Schizosaccharomyces pombe
Align length 34
Score (bit) 32.7
E-value 0.58
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917155|Adiantum capillus-veneris mRNA, clone:
YMU001_000096_H10.
         (305 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9HE02|SSN2_SCHPO Mediator of RNA polymerase II transcription...    33   0.58 
sp|A2CI41|FTSI_CHLAT Peptidoglycan synthetase ftsI homolog OS=Ch...    32   0.99 
sp|Q7UE01|LEPA2_RHOBA GTP-binding protein lepA 2 OS=Rhodopirellu...    30   3.8  
sp|Q9NPR9|GP108_HUMAN Protein GPR108 OS=Homo sapiens GN=GPR108 P...    30   3.8  
sp|Q5EBD9|ELP2_XENTR Elongator complex protein 2 OS=Xenopus trop...    29   6.4  
sp|P06835|BGLS_HANAN Beta-glucosidase OS=Hansenula anomala PE=3 ...    29   6.4  
sp|Q148L1|GP108_BOVIN Protein GPR108 OS=Bos taurus GN=GPR108 PE=...    29   8.4  
sp|P36964|DMB_SQUAC Proteolipid protein DM beta OS=Squalus acant...    29   8.4  
sp|Q9NZN9|AIPL1_HUMAN Aryl-hydrocarbon-interacting protein-like ...    29   8.4  

>sp|Q9HE02|SSN2_SCHPO Mediator of RNA polymerase II transcription
           subunit 13 OS=Schizosaccharomyces pombe GN=srb9 PE=1
           SV=1
          Length = 1223

 Score = 32.7 bits (73), Expect = 0.58
 Identities = 16/34 (47%), Positives = 17/34 (50%)
 Frame = +2

Query: 125 NYLLKRQNAHRLNISEPPSQDPFSHPLHNISEPP 226
           NYL    N H      PPSQ  FS  L N S+PP
Sbjct: 709 NYLSSINNGHHALNDNPPSQVNFSETLVNFSQPP 742


>sp|A2CI41|FTSI_CHLAT Peptidoglycan synthetase ftsI homolog
           OS=Chlorokybus atmophyticus GN=ftsI PE=3 SV=1
          Length = 679

 Score = 32.0 bits (71), Expect = 0.99
 Identities = 22/79 (27%), Positives = 29/79 (36%), Gaps = 3/79 (3%)
 Frame = +2

Query: 26  HLHVNNNTDLCFHKALGSMALQGLHECKNSLSLNYLLKRQNAHRLNISEPPSQDP---FS 196
           +L +    DL   K       QGL  CK       +L  +    L +   PS DP   + 
Sbjct: 214 NLSLQLTLDLELQKIAYKALKQGLENCKGKRGTVLILDPKTGGILTLVALPSYDPNIYYD 273

Query: 197 HPLHNISEPPSQDLYSPSS 253
            P+      P  DLY P S
Sbjct: 274 FPIERFKPWPVTDLYEPGS 292


>sp|Q7UE01|LEPA2_RHOBA GTP-binding protein lepA 2 OS=Rhodopirellula
           baltica GN=lepA2 PE=3 SV=1
          Length = 598

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
 Frame = +2

Query: 59  FH-KALGSMALQ---GLHECKNSLSLNYLLKRQNAHRLNISEPPSQDPFSH 199
           FH + L SM ++   G+    N+++LNY  K   A++LN+ + P    FSH
Sbjct: 36  FHDQMLDSMDIERERGITIKSNTVTLNYTAKDGEAYQLNLIDTPGHVDFSH 86


>sp|Q9NPR9|GP108_HUMAN Protein GPR108 OS=Homo sapiens GN=GPR108 PE=2
           SV=2
          Length = 543

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = +2

Query: 32  HVNNNTDLCFHKALGSMALQGLHECKNSLSLNYLLKRQNAHRLNISEPPSQDPF 193
           H+NN+ +  FH  +GS A +G +      SLN+       H  N S P  + PF
Sbjct: 198 HLNNSYNFSFHVVIGSQAEEGQY------SLNF-------HNCNNSVPGKEHPF 238


>sp|Q5EBD9|ELP2_XENTR Elongator complex protein 2 OS=Xenopus
           tropicalis GN=elp2 PE=2 SV=1
          Length = 824

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +2

Query: 74  GSMALQGLHECKNSLSLNYLLKRQNAHRLNISEPPSQDPFSHPLHNISEPPSQDLY 241
           G + +Q   E     S++    + N   LN++EPP++D   H L N   P  Q LY
Sbjct: 509 GEILIQSTQEEGKYNSVSEQYSQPNFQPLNLTEPPTED---HLLQNTLWPEVQKLY 561


>sp|P06835|BGLS_HANAN Beta-glucosidase OS=Hansenula anomala PE=3
           SV=1
          Length = 825

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +2

Query: 86  LQGLHECKNSLSLNYLLKRQ 145
           L G H C+NS  LNYLLK +
Sbjct: 270 LNGSHACQNSYLLNYLLKEE 289


>sp|Q148L1|GP108_BOVIN Protein GPR108 OS=Bos taurus GN=GPR108 PE=2
           SV=1
          Length = 548

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 5/34 (14%)
 Frame = +2

Query: 32  HVNNNTDLCFHKALGSMALQG-----LHECKNSL 118
           H+NN+ +  FH  +GS A +G      H C NS+
Sbjct: 203 HLNNSYNFSFHVVIGSRAEEGQYNLNFHNCDNSV 236


>sp|P36964|DMB_SQUAC Proteolipid protein DM beta OS=Squalus
           acanthias PE=2 SV=1
          Length = 278

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +2

Query: 5   SVWRLGQHLHVNNNTDLCFHKALGSMALQGLHECKNSLSLN 127
           ++W L Q++ +  +TDLCF   L    +  +HE K   +LN
Sbjct: 157 NIWTLCQNVTIMESTDLCFD--LRQFGIVPIHEQKTVCTLN 195


>sp|Q9NZN9|AIPL1_HUMAN Aryl-hydrocarbon-interacting protein-like 1
           OS=Homo sapiens GN=AIPL1 PE=1 SV=2
          Length = 384

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +2

Query: 134 LKRQNAHRLNISEPPSQDPFSHPLHNISEPPSQDLYSPSSRL 259
           L+ +N      ++PP++ P   P  + +EPP++   +PS+ L
Sbjct: 321 LRCRNMLSQGATQPPAEPPTEPPAQSSTEPPAEPPTAPSAEL 362
tr_hit_id B6N756
Definition tr|B6N756|B6N756_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae
Align length 53
Score (bit) 33.5
E-value 5.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917155|Adiantum capillus-veneris mRNA, clone:
YMU001_000096_H10.
         (305 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6N756|B6N756_BRAFL Putative uncharacterized protein OS=Branc...    33   5.5  
tr|A7S4M9|A7S4M9_NEMVE Predicted protein OS=Nematostella vectens...    33   5.5  
tr|Q23K34|Q23K34_TETTH Putative uncharacterized protein OS=Tetra...    33   9.4  

>tr|B6N756|B6N756_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_91549 PE=4 SV=1
          Length = 473

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = +2

Query: 29  LHVNNNTDLCFHKALGSMALQGLHECKNSLSLNYLLKRQNAHRLNISEPPSQD 187
           L   N++D+   K L ++A   +H+C +S + N  L+  + H L ++ P  QD
Sbjct: 56  LQQRNSSDMTQCKFLKNVAFMKIHKCGSSTTQNIFLRFGHVHNLLVALPKGQD 108


>tr|A7S4M9|A7S4M9_NEMVE Predicted protein OS=Nematostella vectensis
           GN=v1g104534 PE=4 SV=1
          Length = 149

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 28/82 (34%), Positives = 35/82 (42%), Gaps = 17/82 (20%)
 Frame = +3

Query: 87  CKDFMNARTLYL*TTC*KGRTLTGLTSQNPPRKILF---------LTHFTTSQNPPHKI- 236
           C +      LYL TTC     LT  T+Q  PR  L          LTH TT   P   + 
Sbjct: 40  CTEHTVPHKLYLGTTCTVSHALTHCTTQAVPRDHLHRTTCTVRHALTHCTTQAVPRDHLH 99

Query: 237 ---CTHPLHASS----TLKHSL 281
              CT+ LH +S    T+ H+L
Sbjct: 100 SEPCTNTLHHTSWTTCTVSHAL 121


>tr|Q23K34|Q23K34_TETTH Putative uncharacterized protein
           OS=Tetrahymena thermophila SB210 GN=TTHERM_00196000 PE=4
           SV=1
          Length = 1455

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
 Frame = +2

Query: 107 KNSLSLNYLLKRQN--AHRLNIS--EPPSQDPFSHPLHNISEPPSQDLYSPSS 253
           + S  LNYLLK QN   H+   S  + P Q+PF    H   E P   +Y PSS
Sbjct: 184 EESQLLNYLLKSQNYVLHQRPQSALKDPPQNPFGFCYHPEKEQPGVPIYVPSS 236