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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917159
Clone id YMU001_000097_A08
Library
Length 389
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000097_A08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ATTCGCGGCCGCGAATGTACAATGTGTCGGTGTCATGCTGATGATGCCAAAAGGTTGATG
GAATAGACATGTCAAAGGTGTTTAGAAATCTAATACACTCAACTTGCGTCTGAACACGCG
GCTAAAGCAAGTAATTGCCAAAAGTGCTAGCATATACAAAGAGCTCAAAAGCAAGAGCTC
AAAAACCAGTGTCTTCAAGTATCCCTTACTCCTACATGGCTAGCGATAAGGGGAGAAAGC
CCCTGATTTCACAGAGTGAACATAAATTATCATTTCTCAGTAGCCGTTGCCCTTCAAGCA
AAATTGTTGATTACAACATTATTCCTCGGTGAAAAAGAATGGATATTTATGTCACAGATT
GCTACATAGGAGGACAAACCCCTAATAAC
■■Homology search results ■■ -
sp_hit_id Q9RNX4
Definition sp|Q9RNX4|CCME_RHIET Cytochrome c-type biogenesis protein ccmE OS=Rhizobium etli
Align length 31
Score (bit) 29.6
E-value 4.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917159|Adiantum capillus-veneris mRNA, clone:
YMU001_000097_A08.
         (371 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9RNX4|CCME_RHIET Cytochrome c-type biogenesis protein ccmE O...    30   4.9  
sp|Q5T7N2|LITD1_HUMAN LINE-1 type transposase domain-containing ...    29   8.3  

>sp|Q9RNX4|CCME_RHIET Cytochrome c-type biogenesis protein ccmE
           OS=Rhizobium etli GN=ccmE PE=3 SV=1
          Length = 155

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 168 PVSSSIPYSYMASDKGRKPLISQSEHKLSFL 260
           P S S+PY YM +D  R PL  ++  +L  L
Sbjct: 28  PFSQSVPYFYMPADLARTPLAPETRIRLGGL 58


>sp|Q5T7N2|LITD1_HUMAN LINE-1 type transposase domain-containing
           protein 1 OS=Homo sapiens GN=L1TD1 PE=2 SV=1
          Length = 865

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +3

Query: 123 KVLAYTKSSKARAQKPVSSSIPYSYMASDKGRKPLIS-QSEHK 248
           K  + T+   +R QK     IP+SY+  D G+K L+  Q  HK
Sbjct: 493 KTTSLTEKKASRRQK----EIPFSYLVGDSGKKKLVKHQVVHK 531
tr_hit_id Q8FGC2
Definition tr|Q8FGC2|Q8FGC2_ECOL6 Putative peptide synthetase OS=Escherichia coli O6
Align length 70
Score (bit) 32.7
E-value 9.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917159|Adiantum capillus-veneris mRNA, clone:
YMU001_000097_A08.
         (371 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q8FGC2|Q8FGC2_ECOL6 Putative peptide synthetase OS=Escherichi...    33   9.2  
tr|Q1RAD3|Q1RAD3_ECOUT Putative peptide synthetase OS=Escherichi...    33   9.2  
tr|Q0TGG0|Q0TGG0_ECOL5 Putative non-ribosomal peptide synthase O...    33   9.2  
tr|A8AEV7|A8AEV7_CITK8 Putative uncharacterized protein OS=Citro...    33   9.2  
tr|Q0P7K1|Q0P7K1_ECOLX Putative hybrid non-ribosomal peptide-pol...    33   9.2  
tr|B3HKZ2|B3HKZ2_ECOLX Bacitracin synthetase 1 OS=Escherichia co...    33   9.2  

>tr|Q8FGC2|Q8FGC2_ECOL6 Putative peptide synthetase OS=Escherichia
            coli O6 GN=c2458 PE=3 SV=1
          Length = 2154

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 23/70 (32%), Positives = 36/70 (51%)
 Frame = +1

Query: 79   TQLASEHAAKASNCQKC*HIQRAQKQELKNQCLQVSLTPTWLAIRGESP*FHRVNINYHF 258
            T+L +    + S C     + RA  Q LK Q  Q+S+TPT L + G +    R + + HF
Sbjct: 1016 TKLENPTFVRRSYC-----LSRAIWQRLKTQAGQMSITPTTLLLTGFAQVLARFSSSPHF 1070

Query: 259  SVAVALQAKL 288
            S+ + L  +L
Sbjct: 1071 SLNLTLFNRL 1080


>tr|Q1RAD3|Q1RAD3_ECOUT Putative peptide synthetase OS=Escherichia
            coli (strain UTI89 / UPEC) GN=UTI89_C2213 PE=3 SV=1
          Length = 2154

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 23/70 (32%), Positives = 36/70 (51%)
 Frame = +1

Query: 79   TQLASEHAAKASNCQKC*HIQRAQKQELKNQCLQVSLTPTWLAIRGESP*FHRVNINYHF 258
            T+L +    + S C     + RA  Q LK Q  Q+S+TPT L + G +    R + + HF
Sbjct: 1016 TKLENPTFVRRSYC-----LSRAIWQRLKTQAGQMSITPTTLLLTGFAQVLARFSSSPHF 1070

Query: 259  SVAVALQAKL 288
            S+ + L  +L
Sbjct: 1071 SLNLTLFNRL 1080


>tr|Q0TGG0|Q0TGG0_ECOL5 Putative non-ribosomal peptide synthase
            OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC)
            GN=ECP_1970 PE=3 SV=1
          Length = 2154

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 23/70 (32%), Positives = 36/70 (51%)
 Frame = +1

Query: 79   TQLASEHAAKASNCQKC*HIQRAQKQELKNQCLQVSLTPTWLAIRGESP*FHRVNINYHF 258
            T+L +    + S C     + RA  Q LK Q  Q+S+TPT L + G +    R + + HF
Sbjct: 1016 TKLENPTFVRRSYC-----LSRAIWQRLKTQAGQMSITPTTLLLTGFAQVLARFSSSPHF 1070

Query: 259  SVAVALQAKL 288
            S+ + L  +L
Sbjct: 1071 SLNLTLFNRL 1080


>tr|A8AEV7|A8AEV7_CITK8 Putative uncharacterized protein
            OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83
            / SGSC4696) GN=CKO_00870 PE=3 SV=1
          Length = 2177

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 23/70 (32%), Positives = 36/70 (51%)
 Frame = +1

Query: 79   TQLASEHAAKASNCQKC*HIQRAQKQELKNQCLQVSLTPTWLAIRGESP*FHRVNINYHF 258
            T+L +    + S C     + RA  Q LK Q  Q+S+TPT L + G +    R + + HF
Sbjct: 1039 TKLENPTFVRRSYC-----LSRAIWQRLKTQAGQMSITPTTLLLTGFAQVLARFSSSPHF 1093

Query: 259  SVAVALQAKL 288
            S+ + L  +L
Sbjct: 1094 SLNLTLFNRL 1103


>tr|Q0P7K1|Q0P7K1_ECOLX Putative hybrid non-ribosomal
            peptide-polyketide synthetase OS=Escherichia coli GN=clbK
            PE=3 SV=1
          Length = 2154

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 23/70 (32%), Positives = 36/70 (51%)
 Frame = +1

Query: 79   TQLASEHAAKASNCQKC*HIQRAQKQELKNQCLQVSLTPTWLAIRGESP*FHRVNINYHF 258
            T+L +    + S C     + RA  Q LK Q  Q+S+TPT L + G +    R + + HF
Sbjct: 1016 TKLENPTFVRRSYC-----LSRAIWQRLKTQAGQMSITPTTLLLTGFAQVLARFSSSPHF 1070

Query: 259  SVAVALQAKL 288
            S+ + L  +L
Sbjct: 1071 SLNLTLFNRL 1080


>tr|B3HKZ2|B3HKZ2_ECOLX Bacitracin synthetase 1 OS=Escherichia coli
            F11 GN=EcF11_0892 PE=4 SV=1
          Length = 2154

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 23/70 (32%), Positives = 36/70 (51%)
 Frame = +1

Query: 79   TQLASEHAAKASNCQKC*HIQRAQKQELKNQCLQVSLTPTWLAIRGESP*FHRVNINYHF 258
            T+L +    + S C     + RA  Q LK Q  Q+S+TPT L + G +    R + + HF
Sbjct: 1016 TKLENPTFVRRSYC-----LSRAIWQRLKTQAGQMSITPTTLLLTGFAQVLARFSSSPHF 1070

Query: 259  SVAVALQAKL 288
            S+ + L  +L
Sbjct: 1071 SLNLTLFNRL 1080