NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917169
Clone id YMU001_000097_B07
Library
Length 434
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000097_B07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CACAGCTTCCATGGTTTTAGCTCTGAATGCTCGCCCTACAACCTCATTAGTTAGATCCTC
TCATGCAAGAACTAAGTATCTCATCTGCCAAAGTTCTAAAGGCATTGTGACTAGATCCAC
AACCCATTTATAGTACATGGCTAGTGGATATGTTGAGAGCAAGCCATCACGATGTCGAAC
ATTTGAATACATTTGACGAAGTGACATTATTATCTTTGACATGAGAGATAGAATAAAACT
ATGTGCCTACATCATCTCCCTCGTCAATCATTTGTGACTGATCTTCATACCTTGCACTTG
ACAGCATATCTGCCACTGTATTGTCTTTATCTGCAATGTGCTTAAACTCGGGATTTCATG
ACTTAATGTAGGCAATCCACTGCAACATAGCAATGTCTGACGTTGAGCAGCTTGTGATCA
TCCCAAGAAGTGGT
■■Homology search results ■■ -
sp_hit_id Q9W4E2
Definition sp|Q9W4E2|NBEA_DROME Neurobeachin OS=Drosophila melanogaster
Align length 40
Score (bit) 30.4
E-value 3.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917169|Adiantum capillus-veneris mRNA, clone:
YMU001_000097_B07.
         (434 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9W4E2|NBEA_DROME Neurobeachin OS=Drosophila melanogaster GN=...    30   3.3  
sp|A3GH78|MPH1_PICST ATP-dependent DNA helicase MPH1 OS=Pichia s...    30   4.3  
sp|Q53H47|SETMR_HUMAN Histone-lysine N-methyltransferase SETMAR ...    29   7.3  
sp|Q55801|RNH_SYNY3 Ribonuclease HI OS=Synechocystis sp. (strain...    29   7.3  

>sp|Q9W4E2|NBEA_DROME Neurobeachin OS=Drosophila melanogaster GN=rg
           PE=1 SV=2
          Length = 3584

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -3

Query: 234 ILSLMSKIIMSLRQMYSNVRHRDGLLSTYPLAMYYKWVVD 115
           + S ++   +S  Q+YSNVR    +L T     YY WVV+
Sbjct: 647 LYSYLATEFLSDTQIYSNVRRVSTVLQTVHTLKYYYWVVN 686


>sp|A3GH78|MPH1_PICST ATP-dependent DNA helicase MPH1 OS=Pichia
            stipitis GN=MPH1 PE=3 SV=2
          Length = 1050

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = -2

Query: 352  PEFKHIADKDNTVADMLSSARYEDQSQMIDEGDDVGT*FYSISHVKDNNVTSSNV 188
            PE+ +I +K+ TV +      ++D S++ D+G D       ++ + D N T S V
Sbjct: 883  PEYTNITEKEVTVQEDRREIEHDDDSEIFDDGLD-----EQLAMIDDMNTTKSFV 932


>sp|Q53H47|SETMR_HUMAN Histone-lysine N-methyltransferase SETMAR
           OS=Homo sapiens GN=SETMAR PE=1 SV=1
          Length = 671

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = +3

Query: 39  QPH*LDPLMQELSISSAKVLKAL*LDPQPIYSTWLVDMLRASHHDVEHLNTF 194
           +PH   P +Q+L+    +VL      P P YS    D+L  ++H  +HLN F
Sbjct: 578 RPHVAQPTLQKLNELGYEVL------PHPPYSP---DLLPTNYHVFKHLNNF 620


>sp|Q55801|RNH_SYNY3 Ribonuclease HI OS=Synechocystis sp. (strain
           PCC 6803) GN=rnhA PE=3 SV=1
          Length = 160

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = -2

Query: 421 MITSCSTSDIAMLQWIAYIKS*NPEFKHIADKDNTVADMLSSARYEDQSQMIDEG 257
           M+T C    +   QW+           H  +K+N   D L+ A Y++   ++DEG
Sbjct: 112 MLTLCEKHQVTF-QWVK---------AHAGNKENERCDRLAVAAYQNNPNLVDEG 156
tr_hit_id A9SEB1
Definition tr|A9SEB1|A9SEB1_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 45
Score (bit) 72.4
E-value 1.0e-11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917169|Adiantum capillus-veneris mRNA, clone:
YMU001_000097_B07.
         (434 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SEB1|A9SEB1_PHYPA Predicted protein (Fragment) OS=Physcomit...    72   1e-11
tr|Q54AM7|Q54AM7_DICDI Putative uncharacterized protein (Fragmen...    33   5.4  
tr|Q9C0U1|Q9C0U1_YARLI YALI0A10395p OS=Yarrowia lipolytica GN=ta...    33   5.4  
tr|Q6CHG3|Q6CHG3_YARLI YALI0A08932p OS=Yarrowia lipolytica GN=YA...    33   5.4  
tr|Q6CFJ9|Q6CFJ9_YARLI YALI0B06303p OS=Yarrowia lipolytica GN=YA...    33   5.4  
tr|Q6CFJ4|Q6CFJ4_YARLI YALI0B06446p OS=Yarrowia lipolytica GN=YA...    33   5.4  
tr|Q6C613|Q6C613_YARLI YALI0E13376p OS=Yarrowia lipolytica GN=YA...    33   5.4  
tr|Q6C3G7|Q6C3G7_YARLI YALI0E34980p OS=Yarrowia lipolytica GN=YA...    33   5.4  
tr|B1PJ54|B1PJ54_THAPS Pol protein (Fragment) OS=Thalassiosira p...    33   9.3  

>tr|A9SEB1|A9SEB1_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_46806 PE=4 SV=1
          Length = 75

 Score = 72.4 bits (176), Expect = 1e-11
 Identities = 35/45 (77%), Positives = 39/45 (86%)
 Frame = -2

Query: 433 PLLGMITSCSTSDIAMLQWIAYIKS*NPEFKHIADKDNTVADMLS 299
           PLLGMIT+ ST DIAML+WIAYIKS N EFKH+ +KDN VADMLS
Sbjct: 31  PLLGMITNWSTPDIAMLRWIAYIKSLNLEFKHVTEKDNLVADMLS 75


>tr|Q54AM7|Q54AM7_DICDI Putative uncharacterized protein (Fragment)
           OS=Dictyostelium discoideum GN=DDB_0215166 PE=4 SV=1
          Length = 693

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = -2

Query: 385 LQWIAYIKS*NPEFKHIADKDNTVADMLSSARYEDQSQMIDEGDDV 248
           + W   + S N  FK+ + K+NT AD LSS   E+   +I  G+ V
Sbjct: 620 INWNVKLASYNITFKYRSGKENTFADALSSCPVEEVMSVISMGESV 665


>tr|Q9C0U1|Q9C0U1_YARLI YALI0A10395p OS=Yarrowia lipolytica GN=ta PE=4
            SV=2
          Length = 2621

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -2

Query: 382  QWIAYIKS*NPEFKHIADKDNTVADMLSSARYED 281
            +W AYIK  + E + +  +DN VAD LS  ++ D
Sbjct: 2002 RWFAYIKQFDYEVRFVKGRDNPVADWLSREKFSD 2035


>tr|Q6CHG3|Q6CHG3_YARLI YALI0A08932p OS=Yarrowia lipolytica
            GN=YALI0A08932g PE=4 SV=1
          Length = 2621

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -2

Query: 382  QWIAYIKS*NPEFKHIADKDNTVADMLSSARYED 281
            +W AYIK  + E + +  +DN VAD LS  ++ D
Sbjct: 2002 RWFAYIKQFDYEVRFVKGRDNPVADWLSREKFSD 2035


>tr|Q6CFJ9|Q6CFJ9_YARLI YALI0B06303p OS=Yarrowia lipolytica
            GN=YALI0B06303g PE=4 SV=1
          Length = 2621

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -2

Query: 382  QWIAYIKS*NPEFKHIADKDNTVADMLSSARYED 281
            +W AYIK  + E + +  +DN VAD LS  ++ D
Sbjct: 2002 RWFAYIKQFDYEVRFVKGRDNPVADWLSREKFSD 2035


>tr|Q6CFJ4|Q6CFJ4_YARLI YALI0B06446p OS=Yarrowia lipolytica
            GN=YALI0B06446g PE=4 SV=1
          Length = 2621

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -2

Query: 382  QWIAYIKS*NPEFKHIADKDNTVADMLSSARYED 281
            +W AYIK  + E + +  +DN VAD LS  ++ D
Sbjct: 2002 RWFAYIKQFDYEVRFVKGRDNPVADWLSREKFSD 2035


>tr|Q6C613|Q6C613_YARLI YALI0E13376p OS=Yarrowia lipolytica
            GN=YALI0E13376g PE=4 SV=1
          Length = 2621

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -2

Query: 382  QWIAYIKS*NPEFKHIADKDNTVADMLSSARYED 281
            +W AYIK  + E + +  +DN VAD LS  ++ D
Sbjct: 2002 RWFAYIKQFDYEVRFVKGRDNPVADWLSREKFSD 2035


>tr|Q6C3G7|Q6C3G7_YARLI YALI0E34980p OS=Yarrowia lipolytica
            GN=YALI0E34980g PE=4 SV=1
          Length = 2621

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -2

Query: 382  QWIAYIKS*NPEFKHIADKDNTVADMLSSARYED 281
            +W AYIK  + E + +  +DN VAD LS  ++ D
Sbjct: 2002 RWFAYIKQFDYEVRFVKGRDNPVADWLSREKFSD 2035


>tr|B1PJ54|B1PJ54_THAPS Pol protein (Fragment) OS=Thalassiosira
           pseudonana PE=4 SV=1
          Length = 1193

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
 Frame = -2

Query: 388 MLQWIAYIKS*NPEFKHIADKDNTVADMLS--SARYED--QSQMIDEGDDVGT 242
           +L+W  Y++  +P F ++  KDN +AD  S     +++  + +  DE DD+GT
Sbjct: 711 VLRWRCYLEEYSPNFHYLPGKDNVLADAFSRLPCLHDEGVEGKSNDELDDLGT 763