BP917172 |
Clone id |
YMU001_000097_B10 |
Library |
YMU01 |
Length |
520 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000097_B10. |
Accession |
BP917172 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
AGTTGACAAAAACAATAGCTTTATGCGAGTGTGATGTGTCCAGATAAAAACAAAGGGCGG ATGACATTCGATTGTACAAACCCTCAGATATTACACAAAAACACAATCATCATCGACACC TGCCGGTAGCAAAGGAGAGAGGTCCCTTGGATAAGCATGAGATAGAGGGCTCCTGATGTA CATGAATCTGATTGCGACGAGCACGAATATTAGAAACCACGGAACTCTTACAAAATTTGT CCCCCTCTACCAAATGTGCGCAAACAAACTTGCACAGAAAAAATTGATGTGCGTTGCATT GGCTCCTTTTGGGCTTGCTTTTCCTCTTTAAATTACACAAGATGTCCCTTTTTGTGCCAG TTTATGAGAGAGCATTCTCAACAATTTCTTACCCATGAGTGGGCTTGCACTCTCTGAGAC CTGCCCTTCCCCACAGCATTCTAAATGGCATGTTCGGTGAACTACTCCATCAGATCATCC TCAGTTCATATTCCCCAGCTGTTGTAATATATCGTACCCA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q8L9G7 |
Definition |
sp|Q8L9G7|APH1_ARATH Gamma-secretase subunit APH1-like OS=Arabidopsis thaliana |
Align length |
50 |
Score (bit) |
30.8 |
E-value |
4.0 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7QM56 |
Definition |
tr|A7QM56|A7QM56_VITVI Chromosome chr5 scaffold_124, whole genome shotgun sequence OS=Vitis vinifera |
Align length |
50 |
Score (bit) |
36.2 |
E-value |
1.0 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP917172|Adiantum capillus-veneris mRNA, clone: YMU001_000097_B10. (520 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7QM56|A7QM56_VITVI Chromosome chr5 scaffold_124, whole genom... 36 1.00 tr|B8LRZ0|B8LRZ0_PICSI Putative uncharacterized protein OS=Picea... 35 1.7 tr|A9TUU6|A9TUU6_PHYPA Predicted protein OS=Physcomitrella paten... 35 2.9 tr|A9TRS4|A9TRS4_PHYPA Predicted protein OS=Physcomitrella paten... 35 2.9 tr|Q65XN2|Q65XN2_ORYSJ Os05g0543100 protein OS=Oryza sativa subs... 34 3.8 tr|Q0JK13|Q0JK13_ORYSJ Os01g0703600 protein (Putative uncharacte... 34 3.8 tr|B8AW82|B8AW82_ORYSI Putative uncharacterized protein OS=Oryza... 34 3.8 tr|B4FQ20|B4FQ20_MAIZE Putative uncharacterized protein OS=Zea m... 34 3.8 tr|A7QY06|A7QY06_VITVI Chromosome undetermined scaffold_235, who... 34 3.8 tr|A3B6E5|A3B6E5_ORYSJ Putative uncharacterized protein OS=Oryza... 34 3.8 tr|A2WU74|A2WU74_ORYSI Putative uncharacterized protein OS=Oryza... 34 3.8 tr|A1DF38|A1DF38_NEOFI AP-2 adaptor complex subunit mu, putative... 34 3.8 tr|O22715|O22715_ARATH Putative Clathrin Coat Assembly protein (... 34 5.0 tr|A8HXA2|A8HXA2_CHLRE Mu1-Adaptin OS=Chlamydomonas reinhardtii ... 34 5.0 tr|A4QIR8|A4QIR8_LETOB ATP synthase protein 8 OS=Lethrinus obsol... 33 8.5 tr|Q9SGX7|Q9SGX7_ARATH F20B24.16 OS=Arabidopsis thaliana PE=4 SV=1 33 8.5 tr|Q9SAC9|Q9SAC9_ARATH T16B5.13 protein OS=Arabidopsis thaliana ... 33 8.5
>tr|A7QM56|A7QM56_VITVI Chromosome chr5 scaffold_124, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00001929001 PE=4 SV=1 Length = 249
Score = 36.2 bits (82), Expect = 1.00 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 4/50 (8%) Frame = -2
Query: 306 GANATHINFFCASLFAHIW*RGTNFV----RVPWFLIFVLVAIRFMYIRS 169 G H FFC SL + R T FV R+P+FLI L+A+ F+ I + Sbjct: 123 GHGGAHAVFFCLSLLTPAFGRATFFVDRCSRIPFFLISALIALAFVTIHT 172
>tr|B8LRZ0|B8LRZ0_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 428
Score = 35.4 bits (80), Expect = 1.7 Identities = 15/16 (93%), Positives = 15/16 (93%) Frame = -1
Query: 520 WVRYITTAGEYELRMI 473 WVRYIT AGEYELRMI Sbjct: 413 WVRYITMAGEYELRMI 428
>tr|A9TUU6|A9TUU6_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_172080 PE=4 SV=1 Length = 427
Score = 34.7 bits (78), Expect = 2.9 Identities = 14/15 (93%), Positives = 15/15 (100%) Frame = -1
Query: 520 WVRYITTAGEYELRM 476 WVRYITTAGEYELR+ Sbjct: 413 WVRYITTAGEYELRI 427
>tr|A9TRS4|A9TRS4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_108647 PE=4 SV=1 Length = 427
Score = 34.7 bits (78), Expect = 2.9 Identities = 14/15 (93%), Positives = 15/15 (100%) Frame = -1
Query: 520 WVRYITTAGEYELRM 476 WVRYITTAGEYELR+ Sbjct: 413 WVRYITTAGEYELRI 427
>tr|Q65XN2|Q65XN2_ORYSJ Os05g0543100 protein OS=Oryza sativa subsp. japonica GN=OJ1288_A07.7 PE=2 SV=1 Length = 430
Score = 34.3 bits (77), Expect = 3.8 Identities = 14/16 (87%), Positives = 15/16 (93%) Frame = -1
Query: 520 WVRYITTAGEYELRMI 473 WVRYIT AGEYELR+I Sbjct: 415 WVRYITMAGEYELRLI 430
>tr|Q0JK13|Q0JK13_ORYSJ Os01g0703600 protein (Putative uncharacterized protein) OS=Oryza sativa subsp. japonica GN=Os01g0703600 PE=4 SV=1 Length = 429
Score = 34.3 bits (77), Expect = 3.8 Identities = 14/16 (87%), Positives = 15/16 (93%) Frame = -1
Query: 520 WVRYITTAGEYELRMI 473 WVRYIT AGEYELR+I Sbjct: 414 WVRYITMAGEYELRLI 429
>tr|B8AW82|B8AW82_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_20841 PE=4 SV=1 Length = 430
Score = 34.3 bits (77), Expect = 3.8 Identities = 14/16 (87%), Positives = 15/16 (93%) Frame = -1
Query: 520 WVRYITTAGEYELRMI 473 WVRYIT AGEYELR+I Sbjct: 415 WVRYITMAGEYELRLI 430
>tr|B4FQ20|B4FQ20_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 429
Score = 34.3 bits (77), Expect = 3.8 Identities = 14/16 (87%), Positives = 15/16 (93%) Frame = -1
Query: 520 WVRYITTAGEYELRMI 473 WVRYIT AGEYELR+I Sbjct: 414 WVRYITMAGEYELRLI 429
>tr|A7QY06|A7QY06_VITVI Chromosome undetermined scaffold_235, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00009485001 PE=4 SV=1 Length = 428
Score = 34.3 bits (77), Expect = 3.8 Identities = 14/16 (87%), Positives = 15/16 (93%) Frame = -1
Query: 520 WVRYITTAGEYELRMI 473 WVRYIT AGEYELR+I Sbjct: 413 WVRYITMAGEYELRLI 428
>tr|A3B6E5|A3B6E5_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_018617 PE=4 SV=1 Length = 404
Score = 34.3 bits (77), Expect = 3.8 Identities = 14/16 (87%), Positives = 15/16 (93%) Frame = -1
Query: 520 WVRYITTAGEYELRMI 473 WVRYIT AGEYELR+I Sbjct: 389 WVRYITMAGEYELRLI 404
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