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NBDC - LSDB Archive
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BP917173
Clone id YMU001_000097_B11
Library
Length 482
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000097_B11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GAGTACCTGCGAGAATGCTGGGAGAACTATAGGTCATTGGCAGGAGACTTCGATTCGCTA
AGACAGCACCTCATCCTGATCCACAAGGAAAGGTTCCACATGGTGTTGTTAGGTACTCTT
TGGGAAGAAGAGATCGACTCTTAACCATGCATGCACGCTTTAGTGGCATGCTCTCCTTTA
CTTCCTTCTTTAAACGTATTCTTATCAAAACAGCGGCTTTAGCCTTGTACACAAGAACCC
CCTATCTTTCACGAGTCAAGCTTATTACTAGTTCTGTTAAAGAGCCTTACACCCTGTATG
GATAGAGCAGATTGTTTCGCACTACAAACAATTTAGGGCGTACTACAGGTGGCTGAACGG
GCGCCCTACTAGACCAACCCACTATAATAATACCATAAACCCCTAAGGAAGATATAGCAA
ATGGATGGAATATACCTACATTTGAATCCAACAATACCATACCATAATCAAAAGGTGTAA
CG
■■Homology search results ■■ -
sp_hit_id Q01300
Definition sp|Q01300|NU1M_PETHY NADH-ubiquinone oxidoreductase chain 1 OS=Petunia hybrida
Align length 40
Score (bit) 64.3
E-value 3.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917173|Adiantum capillus-veneris mRNA, clone:
YMU001_000097_B11.
         (482 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q01300|NU1M_PETHY NADH-ubiquinone oxidoreductase chain 1 OS=P...    64   3e-10
sp|Q01148|NU1M_WHEAT NADH-ubiquinone oxidoreductase chain 1 OS=T...    64   4e-10
sp|P31839|NU1M_OENBE NADH-ubiquinone oxidoreductase chain 1 OS=O...    64   4e-10
sp|P92558|NU1M_ARATH NADH-ubiquinone oxidoreductase chain 1 OS=A...    64   4e-10
sp|P26845|NU1M_MARPO NADH-ubiquinone oxidoreductase chain 1 OS=M...    59   9e-09
sp|Q2W3J1|NUOH_MAGMM NADH-quinone oxidoreductase subunit H OS=Ma...    57   6e-08
sp|Q2RU33|NUOH_RHORT NADH-quinone oxidoreductase subunit H OS=Rh...    54   5e-07
sp|Q2NA73|NUOH_ERYLH NADH-quinone oxidoreductase subunit H OS=Er...    53   6e-07
sp|A7HY42|NUOH_PARL1 NADH-quinone oxidoreductase subunit H OS=Pa...    53   8e-07
sp|Q2G5Z3|NUOH_NOVAD NADH-quinone oxidoreductase subunit H OS=No...    52   1e-06
sp|Q9ZCF7|NUOH_RICPR NADH-quinone oxidoreductase subunit H OS=Ri...    52   2e-06
sp|A8EZZ9|NUOH_RICCK NADH-quinone oxidoreductase subunit H OS=Ri...    52   2e-06
sp|A8GPY7|NUOH_RICAH NADH-quinone oxidoreductase subunit H OS=Ri...    52   2e-06
sp|Q1GTK6|NUOH_SPHAL NADH-quinone oxidoreductase subunit H OS=Sp...    51   2e-06
sp|Q68VV3|NUOH_RICTY NADH-quinone oxidoreductase subunit H OS=Ri...    51   3e-06
sp|A8GTS1|NUOH_RICRS NADH-quinone oxidoreductase subunit H OS=Ri...    51   3e-06
sp|B0BVB1|NUOH_RICRO NADH-quinone oxidoreductase subunit H OS=Ri...    51   3e-06
sp|Q4UK23|NUOH_RICFE NADH-quinone oxidoreductase subunit H OS=Ri...    51   3e-06
sp|Q92G93|NUOH_RICCN NADH-quinone oxidoreductase subunit H OS=Ri...    51   3e-06
sp|Q1RKD1|NUOH_RICBR NADH-quinone oxidoreductase subunit H OS=Ri...    51   3e-06
sp|A8GY33|NUOH_RICB8 NADH-quinone oxidoreductase subunit H OS=Ri...    51   3e-06
sp|Q5WT27|NUOH_LEGPL NADH-quinone oxidoreductase subunit H OS=Le...    50   4e-06
sp|Q5ZRU5|NUOH_LEGPH NADH-quinone oxidoreductase subunit H OS=Le...    50   4e-06
sp|A5IHV6|NUOH_LEGPC NADH-quinone oxidoreductase subunit H OS=Le...    50   4e-06
sp|Q5X1B4|NUOH_LEGPA NADH-quinone oxidoreductase subunit H OS=Le...    50   4e-06
sp|Q3SJQ0|NUOH_THIDA NADH-quinone oxidoreductase subunit H OS=Th...    50   5e-06
sp|Q4FM84|NUOH_PELUB NADH-quinone oxidoreductase subunit H OS=Pe...    50   5e-06
sp|A1WXW0|NUOH_HALHL NADH-quinone oxidoreductase subunit H OS=Ha...    50   5e-06
sp|Q87EP8|NUOH_XYLFT NADH-quinone oxidoreductase subunit H OS=Xy...    49   9e-06
sp|Q9PGI8|NUOH_XYLFA NADH-quinone oxidoreductase subunit H OS=Xy...    49   9e-06

>sp|Q01300|NU1M_PETHY NADH-ubiquinone oxidoreductase chain 1
           OS=Petunia hybrida GN=ND1 PE=3 SV=1
          Length = 325

 Score = 64.3 bits (155), Expect = 3e-10
 Identities = 29/40 (72%), Positives = 33/40 (82%)
 Frame = -2

Query: 481 VTPFDYGMVLLDSNVGIFHPFAISSLGVYGIIIVGWSSRA 362
           V PFDYGMVL D N+G+ + FAISSLGVYGIII GWSS +
Sbjct: 91  VVPFDYGMVLSDPNIGLLYLFAISSLGVYGIIIAGWSSNS 130


>sp|Q01148|NU1M_WHEAT NADH-ubiquinone oxidoreductase chain 1
           OS=Triticum aestivum GN=ND1 PE=2 SV=1
          Length = 325

 Score = 63.9 bits (154), Expect = 4e-10
 Identities = 29/40 (72%), Positives = 33/40 (82%)
 Frame = -2

Query: 481 VTPFDYGMVLLDSNVGIFHPFAISSLGVYGIIIVGWSSRA 362
           V PFDYGMVL D N+G+ + FAISSLGVYGIII GWSS +
Sbjct: 91  VVPFDYGMVLSDLNIGLLYLFAISSLGVYGIIIAGWSSNS 130


>sp|P31839|NU1M_OENBE NADH-ubiquinone oxidoreductase chain 1
           OS=Oenothera bertiana GN=ND1 PE=2 SV=1
          Length = 331

 Score = 63.9 bits (154), Expect = 4e-10
 Identities = 29/40 (72%), Positives = 33/40 (82%)
 Frame = -2

Query: 481 VTPFDYGMVLLDSNVGIFHPFAISSLGVYGIIIVGWSSRA 362
           V PFDYGMVL D N+G+ + FAISSLGVYGIII GWSS +
Sbjct: 97  VVPFDYGMVLSDLNIGLLYLFAISSLGVYGIIIAGWSSNS 136


>sp|P92558|NU1M_ARATH NADH-ubiquinone oxidoreductase chain 1
           OS=Arabidopsis thaliana GN=ND1 PE=1 SV=4
          Length = 325

 Score = 63.9 bits (154), Expect = 4e-10
 Identities = 29/40 (72%), Positives = 33/40 (82%)
 Frame = -2

Query: 481 VTPFDYGMVLLDSNVGIFHPFAISSLGVYGIIIVGWSSRA 362
           V PFDYGMVL D N+G+ + FAISSLGVYGIII GWSS +
Sbjct: 91  VVPFDYGMVLSDLNIGLLYLFAISSLGVYGIIIAGWSSNS 130


>sp|P26845|NU1M_MARPO NADH-ubiquinone oxidoreductase chain 1
           OS=Marchantia polymorpha GN=ND1 PE=3 SV=2
          Length = 328

 Score = 59.3 bits (142), Expect = 9e-09
 Identities = 26/40 (65%), Positives = 31/40 (77%)
 Frame = -2

Query: 481 VTPFDYGMVLLDSNVGIFHPFAISSLGVYGIIIVGWSSRA 362
           V PFDYGMV  D N+G+ + FAISSLGVYGII  GW+S +
Sbjct: 94  VIPFDYGMVFSDLNIGVLYLFAISSLGVYGIITAGWASNS 133


>sp|Q2W3J1|NUOH_MAGMM NADH-quinone oxidoreductase subunit H
           OS=Magnetospirillum magneticum (strain AMB-1 / ATCC
           700264) GN=nuoH PE=3 SV=1
          Length = 341

 Score = 56.6 bits (135), Expect = 6e-08
 Identities = 26/40 (65%), Positives = 31/40 (77%)
 Frame = -2

Query: 481 VTPFDYGMVLLDSNVGIFHPFAISSLGVYGIIIVGWSSRA 362
           V PFD G VL D NVG+ + FAISSLGVYGII+ GW+S +
Sbjct: 105 VIPFDKGWVLADINVGVLYLFAISSLGVYGIIMAGWASNS 144


>sp|Q2RU33|NUOH_RHORT NADH-quinone oxidoreductase subunit H
           OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255)
           GN=nuoH PE=3 SV=1
          Length = 337

 Score = 53.5 bits (127), Expect = 5e-07
 Identities = 23/40 (57%), Positives = 30/40 (75%)
 Frame = -2

Query: 481 VTPFDYGMVLLDSNVGIFHPFAISSLGVYGIIIVGWSSRA 362
           V PFD G V+ D NVG+ + FA+S LGVYGII+ GW+S +
Sbjct: 101 VIPFDAGWVVADINVGVLYLFAVSGLGVYGIIMAGWASNS 140


>sp|Q2NA73|NUOH_ERYLH NADH-quinone oxidoreductase subunit H
           OS=Erythrobacter litoralis (strain HTCC2594) GN=nuoH
           PE=3 SV=1
          Length = 348

 Score = 53.1 bits (126), Expect = 6e-07
 Identities = 24/40 (60%), Positives = 30/40 (75%)
 Frame = -2

Query: 481 VTPFDYGMVLLDSNVGIFHPFAISSLGVYGIIIVGWSSRA 362
           V PF  GMVL D NVG+ +  AISSLGVYGI++ GW+S +
Sbjct: 106 VIPFGDGMVLADINVGLLYVLAISSLGVYGIVMAGWASNS 145


>sp|A7HY42|NUOH_PARL1 NADH-quinone oxidoreductase subunit H
           OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023
           / NCIMB 13966) GN=nuoH PE=3 SV=1
          Length = 337

 Score = 52.8 bits (125), Expect = 8e-07
 Identities = 24/40 (60%), Positives = 30/40 (75%)
 Frame = -2

Query: 481 VTPFDYGMVLLDSNVGIFHPFAISSLGVYGIIIVGWSSRA 362
           V P D  MV+ D NVGI + FAISSLGVYG+I+ GW+S +
Sbjct: 101 VIPLDARMVIADINVGILYIFAISSLGVYGVIMAGWASNS 140


>sp|Q2G5Z3|NUOH_NOVAD NADH-quinone oxidoreductase subunit H
           OS=Novosphingobium aromaticivorans (strain DSM 12444)
           GN=nuoH PE=3 SV=1
          Length = 347

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 23/40 (57%), Positives = 30/40 (75%)
 Frame = -2

Query: 481 VTPFDYGMVLLDSNVGIFHPFAISSLGVYGIIIVGWSSRA 362
           V PF+ G VL + NVG+ +  AISSLGVYG++I GWSS +
Sbjct: 106 VIPFNSGAVLANINVGLLYVLAISSLGVYGVVIAGWSSNS 145
tr_hit_id Q6JP54
Definition tr|Q6JP54|Q6JP54_9FILI NADH-ubiquinone oxidoreductase chain 1 (Fragment) OS=Adiantum sp. Qiu 95118
Align length 40
Score (bit) 81.6
E-value 2.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917173|Adiantum capillus-veneris mRNA, clone:
YMU001_000097_B11.
         (482 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6JP54|Q6JP54_9FILI NADH-ubiquinone oxidoreductase chain 1 (F...    82   2e-14
tr|Q6JP65|Q6JP65_HUPLU NADH-ubiquinone oxidoreductase chain 1 (F...    67   3e-10
tr|Q6JP63|Q6JP63_EQUAR NADH-ubiquinone oxidoreductase chain 1 (F...    65   1e-09
tr|Q6R977|Q6R977_MAIZE NADH-ubiquinone oxidoreductase chain 1 OS...    64   3e-09
tr|Q5U6E2|Q5U6E2_BETVU NADH-ubiquinone oxidoreductase chain 1 OS...    64   3e-09
tr|Q5M9U6|Q5M9U6_TOBAC NADH-ubiquinone oxidoreductase chain 1 OS...    64   3e-09
tr|Q332N4|Q332N4_WHEAT NADH-ubiquinone oxidoreductase chain 1 (F...    64   3e-09
tr|Q2F9A3|Q2F9A3_ORYSI NADH-ubiquinone oxidoreductase chain 1 OS...    64   3e-09
tr|Q2F8Z6|Q2F8Z6_ORYSJ NADH-ubiquinone oxidoreductase chain 1 OS...    64   3e-09
tr|Q1KKB7|Q1KKB7_MAIZE NADH-ubiquinone oxidoreductase chain 1 OS...    64   3e-09
tr|Q0GRB6|Q0GRB6_ZEALU NADH-ubiquinone oxidoreductase chain 1 OS...    64   3e-09
tr|Q0GR89|Q0GR89_ZEAPE NADH-ubiquinone oxidoreductase chain 1 OS...    64   3e-09
tr|Q0GR57|Q0GR57_ZEAMP NADH-ubiquinone oxidoreductase chain 1 OS...    64   3e-09
tr|Q09EQ6|Q09EQ6_TRIDA NADH-ubiquinone oxidoreductase chain 1 OS...    64   3e-09
tr|Q09EM4|Q09EM4_SORBI NADH-ubiquinone oxidoreductase chain 1 OS...    64   3e-09
tr|B8Q6M5|B8Q6M5_BAMOL NADH dehydrogenase subunit 1 (Fragment) O...    64   3e-09
tr|Q9MF78|Q9MF78_BETVU NADH-ubiquinone oxidoreductase chain 1 OS...    64   4e-09
tr|Q95867|Q95867_NICSY NADH-ubiquinone oxidoreductase chain 1 OS...    64   4e-09
tr|Q8HCR7|Q8HCR7_ORYSJ NADH-ubiquinone oxidoreductase chain 1 OS...    64   4e-09
tr|Q6YSM5|Q6YSM5_BRANA NADH-ubiquinone oxidoreductase chain 1 OS...    64   4e-09
tr|Q0QG26|Q0QG26_BETVU NADH-ubiquinone oxidoreductase chain 1 OS...    64   4e-09
tr|B4XAP3|B4XAP3_9POAL NADH dehydrogenase subunit 1 (Fragment) O...    64   4e-09
tr|B1A0V1|B1A0V1_BAMOL NADH-ubiquinone oxidoreductase chain 1 (F...    64   4e-09
tr|Q6JP57|Q6JP57_9FILI NADH-ubiquinone oxidoreductase chain 1 (F...    63   6e-09
tr|Q8M1E2|Q8M1E2_CHAGL NADH-ubiquinone oxidoreductase chain 1 OS...    63   8e-09
tr|Q7YAN0|Q7YAN0_CHAVU NADH-ubiquinone oxidoreductase chain 1 OS...    63   8e-09
tr|Q6JP71|Q6JP71_9BRYO NADH-ubiquinone oxidoreductase chain 1 (F...    63   8e-09
tr|Q6JP70|Q6JP70_DIPFO NADH-ubiquinone oxidoreductase chain 1 (F...    63   8e-09
tr|Q6JP69|Q6JP69_9BRYO NADH-ubiquinone oxidoreductase chain 1 (F...    63   8e-09
tr|Q6JP68|Q6JP68_9BRYO NADH-ubiquinone oxidoreductase chain 1 (F...    63   8e-09

>tr|Q6JP54|Q6JP54_9FILI NADH-ubiquinone oxidoreductase chain 1
           (Fragment) OS=Adiantum sp. Qiu 95118 GN=nad1 PE=3 SV=1
          Length = 197

 Score = 81.6 bits (200), Expect = 2e-14
 Identities = 38/40 (95%), Positives = 39/40 (97%)
 Frame = -2

Query: 481 VTPFDYGMVLLDSNVGIFHPFAISSLGVYGIIIVGWSSRA 362
           VTPFDYGMVLLDSNVGIFHPFAISSLGVYGIIIVGWSS +
Sbjct: 30  VTPFDYGMVLLDSNVGIFHPFAISSLGVYGIIIVGWSSNS 69


>tr|Q6JP65|Q6JP65_HUPLU NADH-ubiquinone oxidoreductase chain 1
           (Fragment) OS=Huperzia lucidula GN=nad1 PE=3 SV=1
          Length = 272

 Score = 67.4 bits (163), Expect = 3e-10
 Identities = 32/40 (80%), Positives = 34/40 (85%)
 Frame = -2

Query: 481 VTPFDYGMVLLDSNVGIFHPFAISSLGVYGIIIVGWSSRA 362
           VTPFDYGMVL DSNVGI + FAISSLGVYGII  GWSS +
Sbjct: 37  VTPFDYGMVLSDSNVGILYLFAISSLGVYGIITAGWSSNS 76


>tr|Q6JP63|Q6JP63_EQUAR NADH-ubiquinone oxidoreductase chain 1
           (Fragment) OS=Equisetum arvense GN=nad1 PE=3 SV=1
          Length = 223

 Score = 65.5 bits (158), Expect = 1e-09
 Identities = 31/38 (81%), Positives = 33/38 (86%)
 Frame = -2

Query: 481 VTPFDYGMVLLDSNVGIFHPFAISSLGVYGIIIVGWSS 368
           V PFDYGMVL DSNVGI + FAISSLGVYGII+ GWSS
Sbjct: 30  VIPFDYGMVLSDSNVGILYLFAISSLGVYGIIMAGWSS 67


>tr|Q6R977|Q6R977_MAIZE NADH-ubiquinone oxidoreductase chain 1
           OS=Zea mays GN=nad1 PE=3 SV=1
          Length = 325

 Score = 64.3 bits (155), Expect = 3e-09
 Identities = 29/40 (72%), Positives = 33/40 (82%)
 Frame = -2

Query: 481 VTPFDYGMVLLDSNVGIFHPFAISSLGVYGIIIVGWSSRA 362
           V PFDYGMVL D N+G+ + FAISSLGVYGIII GWSS +
Sbjct: 91  VVPFDYGMVLSDPNIGLLYLFAISSLGVYGIIIAGWSSNS 130


>tr|Q5U6E2|Q5U6E2_BETVU NADH-ubiquinone oxidoreductase chain 1
           OS=Beta vulgaris subsp. vulgaris GN=nad1 PE=3 SV=1
          Length = 325

 Score = 64.3 bits (155), Expect = 3e-09
 Identities = 29/40 (72%), Positives = 33/40 (82%)
 Frame = -2

Query: 481 VTPFDYGMVLLDSNVGIFHPFAISSLGVYGIIIVGWSSRA 362
           V PFDYGMVL D N+G+ + FAISSLGVYGIII GWSS +
Sbjct: 91  VVPFDYGMVLSDPNIGLLYLFAISSLGVYGIIIAGWSSNS 130


>tr|Q5M9U6|Q5M9U6_TOBAC NADH-ubiquinone oxidoreductase chain 1
           OS=Nicotiana tabacum GN=nad1 PE=3 SV=1
          Length = 325

 Score = 64.3 bits (155), Expect = 3e-09
 Identities = 29/40 (72%), Positives = 33/40 (82%)
 Frame = -2

Query: 481 VTPFDYGMVLLDSNVGIFHPFAISSLGVYGIIIVGWSSRA 362
           V PFDYGMVL D N+G+ + FAISSLGVYGIII GWSS +
Sbjct: 91  VVPFDYGMVLSDPNIGLLYLFAISSLGVYGIIIAGWSSNS 130


>tr|Q332N4|Q332N4_WHEAT NADH-ubiquinone oxidoreductase chain 1
           (Fragment) OS=Triticum aestivum GN=nad1 PE=3 SV=1
          Length = 325

 Score = 64.3 bits (155), Expect = 3e-09
 Identities = 29/40 (72%), Positives = 33/40 (82%)
 Frame = -2

Query: 481 VTPFDYGMVLLDSNVGIFHPFAISSLGVYGIIIVGWSSRA 362
           V PFDYGMVL D N+G+ + FAISSLGVYGIII GWSS +
Sbjct: 91  VVPFDYGMVLSDPNIGLLYLFAISSLGVYGIIIAGWSSNS 130


>tr|Q2F9A3|Q2F9A3_ORYSI NADH-ubiquinone oxidoreductase chain 1
           OS=Oryza sativa subsp. indica GN=nad1 PE=3 SV=1
          Length = 325

 Score = 64.3 bits (155), Expect = 3e-09
 Identities = 29/40 (72%), Positives = 33/40 (82%)
 Frame = -2

Query: 481 VTPFDYGMVLLDSNVGIFHPFAISSLGVYGIIIVGWSSRA 362
           V PFDYGMVL D N+G+ + FAISSLGVYGIII GWSS +
Sbjct: 91  VVPFDYGMVLSDPNIGLLYLFAISSLGVYGIIIAGWSSNS 130


>tr|Q2F8Z6|Q2F8Z6_ORYSJ NADH-ubiquinone oxidoreductase chain 1
           OS=Oryza sativa subsp. japonica GN=nad1 PE=3 SV=1
          Length = 325

 Score = 64.3 bits (155), Expect = 3e-09
 Identities = 29/40 (72%), Positives = 33/40 (82%)
 Frame = -2

Query: 481 VTPFDYGMVLLDSNVGIFHPFAISSLGVYGIIIVGWSSRA 362
           V PFDYGMVL D N+G+ + FAISSLGVYGIII GWSS +
Sbjct: 91  VVPFDYGMVLSDPNIGLLYLFAISSLGVYGIIIAGWSSNS 130


>tr|Q1KKB7|Q1KKB7_MAIZE NADH-ubiquinone oxidoreductase chain 1
           OS=Zea mays subsp. mays GN=nad1 PE=3 SV=1
          Length = 325

 Score = 64.3 bits (155), Expect = 3e-09
 Identities = 29/40 (72%), Positives = 33/40 (82%)
 Frame = -2

Query: 481 VTPFDYGMVLLDSNVGIFHPFAISSLGVYGIIIVGWSSRA 362
           V PFDYGMVL D N+G+ + FAISSLGVYGIII GWSS +
Sbjct: 91  VVPFDYGMVLSDPNIGLLYLFAISSLGVYGIIIAGWSSNS 130