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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917174
Clone id YMU001_000097_B12
Library
Length 537
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000097_B12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CACATCTGACCATGTAAAGCAGAGTTTCTCTCAAGGGAACCCCATATCTGGTAGATAATG
CACTGCACAGCTACACTTACAAGCAAACCTTTTAACCATGAATCGTGTACCTCTTTAGAA
AGCTTGGAAATTACCTCAAAATCTCCTTCATCATCCATATAACACTACTGCTACACTGGA
CCCTATTTTTCCATAGGCTCTTCTATCACCATATGCTGTGGAGCTGACTCCACATCTATA
GCACCCTCACGCCCAACATCATCAAGCACTTCTTCATTGATCGCCCCTTCAAGGTCGACC
AAATCCTCTGCTTTGTCAACTACATCTGCCTGCTTTTCCACTCCATCTTTAGCCAAAGGA
GATAGAGAATGATCATCCTTTACCACATTGCTCTAGTCTCCTTCTGTAGCCAAACTTTCT
CTTTCATTCATAGCAACGCGTCATGCCTGTTGCACCACGGTGGCACATTCCACTGCAACT
TTAACAATCATAGTCATCAACATGGCACCACATAGCATCTTCACCTGCATGTCCACT
■■Homology search results ■■ -
sp_hit_id Q47S65
Definition sp|Q47S65|RIMM_THEFY Ribosome maturation factor rimM OS=Thermobifida fusca (strain YX)
Align length 65
Score (bit) 32.3
E-value 1.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917174|Adiantum capillus-veneris mRNA, clone:
YMU001_000097_B12.
         (537 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q47S65|RIMM_THEFY Ribosome maturation factor rimM OS=Thermobi...    32   1.5  
sp|Q3K7V7|Y4410_PSEPF UPF0082 protein Pfl01_4410 OS=Pseudomonas ...    31   4.3  
sp|Q804T6|DIXC1_DANRE Dixin OS=Danio rerio GN=dixdc1 PE=1 SV=1         30   7.4  
sp|O54941|SMCE1_MOUSE SWI/SNF-related matrix-associated actin-de...    30   9.7  
sp|P05150|OTC_YEAST Ornithine carbamoyltransferase OS=Saccharomy...    30   9.7  

>sp|Q47S65|RIMM_THEFY Ribosome maturation factor rimM
           OS=Thermobifida fusca (strain YX) GN=rimM PE=3 SV=1
          Length = 170

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
 Frame = -2

Query: 374 DHSLSPLAKDGVEKQA-----DVVDKAEDLVDLEGAINEEVLDDVGREGAIDVESAPQHM 210
           DH L  L  + V+ +A     DV+  A+D++ + G    EVL    RE   DV++A   +
Sbjct: 98  DHELIGLRVETVDGEAVGEVVDVLHHAQDMLVVSGEKGSEVLVPFVRELVPDVDTAAGRV 157

Query: 209 VIEEP 195
           VI+ P
Sbjct: 158 VIDPP 162


>sp|Q3K7V7|Y4410_PSEPF UPF0082 protein Pfl01_4410 OS=Pseudomonas
           fluorescens (strain Pf0-1) GN=Pfl01_4410 PE=3 SV=1
          Length = 248

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = -2

Query: 428 NERESLATEGD*SNVVKDDHSLSPLAKDGVEKQADVVDKAEDLVDLEGAI-NEEVLDDVG 252
           N  E+   +GD + +V    + + L  +G EK   ++D  EDL D++    N ++ +DV 
Sbjct: 185 NALEAAGFKGDDAEIVMQPTTSAELDLEGAEKVLKLIDMLEDLDDVQNVYSNADIPEDVA 244

Query: 251 RE 246
            +
Sbjct: 245 AQ 246


>sp|Q804T6|DIXC1_DANRE Dixin OS=Danio rerio GN=dixdc1 PE=1 SV=1
          Length = 443

 Score = 30.0 bits (66), Expect = 7.4
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = -2

Query: 365 LSPLAKDGVEKQADVVDKAEDLVDLEGAINEEV--LDDVGREGAIDVESAPQHMVIEE 198
           LS  +     K+  ++ K+ED  +L G   E+   L+DV +  A D    P+H+V EE
Sbjct: 9   LSSSSPSHTPKEEYIIAKSEDSGELVGNHTEQPQSLEDVVKSSATDPYPGPEHVVKEE 66


>sp|O54941|SMCE1_MOUSE SWI/SNF-related matrix-associated
           actin-dependent regulator chromatin subfamily E member 1
           OS=Mus musculus GN=Smarce1 PE=2 SV=1
          Length = 411

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 24/80 (30%), Positives = 37/80 (46%)
 Frame = -2

Query: 527 QVKMLCGAMLMTMIVKVAVECATVVQQA*RVAMNERESLATEGD*SNVVKDDHSLSPLAK 348
           ++K LCG  +   + K+A E A   +QA R    ERE  A E       +   S++P   
Sbjct: 269 ELKRLCGLKVEVDMEKIAAEIAQAEEQA-RKRQEEREKEAAE----QAERSQSSMAP--- 320

Query: 347 DGVEKQADVVDKAEDLVDLE 288
               ++  V +KAE+  D E
Sbjct: 321 ----EEEQVANKAEEKKDEE 336


>sp|P05150|OTC_YEAST Ornithine carbamoyltransferase OS=Saccharomyces
           cerevisiae GN=ARG3 PE=1 SV=1
          Length = 338

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
 Frame = -2

Query: 431 MNERESLATEGD*SNVVKD--------DHSLSPLAKDGVEKQADVVDKAEDLVDLEGAIN 276
           +N +  +A  GD +NV+ D          S+S     G+E  +D+VD+A+ + +  GA  
Sbjct: 171 INSKLKMAWIGDANNVINDMCIACLKFGISVSISTPPGIEMDSDIVDEAKKVAERNGATF 230

Query: 275 EEVLDDV 255
           E   D +
Sbjct: 231 ELTHDSL 237
tr_hit_id Q0IEJ1
Definition tr|Q0IEJ1|Q0IEJ1_AEDAE DEAD box ATP-dependent RNA helicase OS=Aedes aegypti
Align length 83
Score (bit) 40.4
E-value 0.059
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917174|Adiantum capillus-veneris mRNA, clone:
YMU001_000097_B12.
         (537 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q0IEJ1|Q0IEJ1_AEDAE DEAD box ATP-dependent RNA helicase OS=Ae...    40   0.059
tr|A4W484|A4W484_STRS2 Predicted RNA-binding protein OS=Streptoc...    35   1.9  
tr|A4VXZ0|A4VXZ0_STRSY Predicted RNA-binding protein OS=Streptoc...    35   1.9  
tr|Q1ZF16|Q1ZF16_9GAMM Flagellar motor protein OS=Psychromonas s...    35   2.5  
tr|Q9U459|Q9U459_PLAFA Erythrocyte membrane-associated giant pro...    35   2.5  
tr|Q8IHN3|Q8IHN3_PLAF7 Antigen 332, putative OS=Plasmodium falci...    35   2.5  
tr|B6QK69|B6QK69_PENMA Midasin, putative OS=Penicillium marneffe...    35   3.2  
tr|Q4UI87|Q4UI87_THEAN Tpr-related protein family member, putati...    34   4.2  
tr|B6PHK9|B6PHK9_BRAFL Putative uncharacterized protein OS=Branc...    33   7.2  
tr|B8MLH9|B8MLH9_9EURO Midasin, putative OS=Talaromyces stipitat...    33   7.2  
tr|Q0C405|Q0C405_HYPNA Putative uncharacterized protein OS=Hypho...    33   9.3  
tr|Q8H079|Q8H079_ORYSJ Os03g0149300 protein OS=Oryza sativa subs...    33   9.3  
tr|Q10RR0|Q10RR0_ORYSJ cDNA, clone: J090056E21, full insert sequ...    33   9.3  
tr|B8ANC3|B8ANC3_ORYSI Putative uncharacterized protein OS=Oryza...    33   9.3  

>tr|Q0IEJ1|Q0IEJ1_AEDAE DEAD box ATP-dependent RNA helicase OS=Aedes
           aegypti GN=AAEL010317 PE=3 SV=1
          Length = 804

 Score = 40.4 bits (93), Expect = 0.059
 Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
 Frame = -2

Query: 341 VEKQADVVDKAEDLVDLEGAINE-EVLDDVGREGAIDVESAPQHMVIEEPMEK*GPV*Q* 165
           V+K ADVVDK  DL+     INE E ++D+  E  ++VE  P  +      +K G     
Sbjct: 12  VKKTADVVDKKYDLIK---TINEDEEVEDLSEESDVEVEYQPTKL----KNQKKG----- 59

Query: 164 CYMDDEGDFEVISKLSKEVHDSW 96
              D + DF+ +S +S+  HD+W
Sbjct: 60  ---DFDNDFKFVSSVSEYNHDTW 79


>tr|A4W484|A4W484_STRS2 Predicted RNA-binding protein
           OS=Streptococcus suis (strain 98HAH33) GN=SSU98_2015
           PE=4 SV=1
          Length = 360

 Score = 35.4 bits (80), Expect = 1.9
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
 Frame = -2

Query: 500 LMTMIVKVAVECATVVQQA*RVAMNERESLATEGD*SNVVKDDHSLSPLAKDGVEKQADV 321
           +   I+K   E  T++++  R+ +   E L T  D +   K+D +   ++++  +  AD+
Sbjct: 140 IKAQILKNEKEATTILEETGRIEILS-EDLLTTTDATTSAKEDVNQEVISENQADNFADL 198

Query: 320 VDKAEDLVDLEGAINE------EVLDDVGREGAID 234
             K E   D+E  ++E      E+LDD+  E  ID
Sbjct: 199 DIKIEPQYDIEQVVSEVTAYVQEILDDMDVEARID 233


>tr|A4VXZ0|A4VXZ0_STRSY Predicted RNA-binding protein
           OS=Streptococcus suis (strain 05ZYH33) GN=SSU05_2013
           PE=4 SV=1
          Length = 360

 Score = 35.4 bits (80), Expect = 1.9
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
 Frame = -2

Query: 500 LMTMIVKVAVECATVVQQA*RVAMNERESLATEGD*SNVVKDDHSLSPLAKDGVEKQADV 321
           +   I+K   E  T++++  R+ +   E L T  D +   K+D +   ++++  +  AD+
Sbjct: 140 IKAQILKNEKEATTILEETGRIEILS-EDLLTTTDATTSAKEDVNQEVISENQADNFADL 198

Query: 320 VDKAEDLVDLEGAINE------EVLDDVGREGAID 234
             K E   D+E  ++E      E+LDD+  E  ID
Sbjct: 199 DIKIEPQYDIEQVVSEVTAYVQEILDDMDVEARID 233


>tr|Q1ZF16|Q1ZF16_9GAMM Flagellar motor protein OS=Psychromonas sp.
           CNPT3 GN=PCNPT3_09566 PE=4 SV=1
          Length = 299

 Score = 35.0 bits (79), Expect = 2.5
 Identities = 21/78 (26%), Positives = 42/78 (53%)
 Frame = -2

Query: 437 VAMNERESLATEGD*SNVVKDDHSLSPLAKDGVEKQADVVDKAEDLVDLEGAINEEVLDD 258
           + M E +   +EGD S    ++ S   + ++G +      + +E    L  A+ +E+ D+
Sbjct: 96  IEMTEAKLDFSEGDSSRADGEEDSKEDIPEEGNQGNEQSSEASEAQHQLAKAVAQELQDE 155

Query: 257 VGREGAIDVESAPQHMVI 204
           + +EGAI++ES  Q ++I
Sbjct: 156 I-QEGAIEIESLGQQLII 172


>tr|Q9U459|Q9U459_PLAFA Erythrocyte membrane-associated giant protein
            antigen 332 OS=Plasmodium falciparum PE=4 SV=2
          Length = 5458

 Score = 35.0 bits (79), Expect = 2.5
 Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 9/80 (11%)
 Frame = -2

Query: 386  VVKDDHSLSPLAKDGVEKQADVVDKA---EDLVDLEGAINEEVLDDVGREGAID------ 234
            VV+D   +  + +DG   +  V +     E++V+ EG++NEEV ++V   G +D      
Sbjct: 2092 VVEDGSVIQEVVEDGSVTEEIVQENGSVTEEIVEEEGSVNEEVEEEVSVSGEVDETEYVT 2151

Query: 233  VESAPQHMVIEEPMEK*GPV 174
             E   +  V+EE +E+ G V
Sbjct: 2152 EEVEEEGSVVEEIVEEEGSV 2171



 Score = 34.7 bits (78), Expect = 3.2
 Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
 Frame = -2

Query: 425  ERESLATEGD*SNVVKDDHSLSPLAKDGVEKQADVVD--KAEDLVDLEGAINEEVLDDVG 252
            E E  ATEG    +V+D  +   +  D +  +  V D    ++ V+ +G+I EEVLDD G
Sbjct: 2757 EEEGSATEG----IVEDRLATEGIVDDILVTEEIVEDGLATDEFVEQQGSIIEEVLDDEG 2812

Query: 251  --REGAIDVESAPQHMVIE 201
               E  ++ E +P   ++E
Sbjct: 2813 SVTEEIVEEEGSPNEEIVE 2831



 Score = 34.3 bits (77), Expect = 4.2
 Identities = 17/55 (30%), Positives = 35/55 (63%), Gaps = 4/55 (7%)
 Frame = -2

Query: 386 VVKDDHSLS---PLAKDGVEKQADVVDKA-EDLVDLEGAINEEVLDDVGREGAID 234
           + ++D S++   P+ +  V K+ D ++   E++V+ EG++NEEV ++V   G +D
Sbjct: 484 LTEEDQSVTKEIPVEEHSVFKEVDEIESVTEEIVEEEGSVNEEVEEEVSVSGEVD 538


>tr|Q8IHN3|Q8IHN3_PLAF7 Antigen 332, putative OS=Plasmodium falciparum
            (isolate 3D7) GN=PF11_0507 PE=4 SV=1
          Length = 5507

 Score = 35.0 bits (79), Expect = 2.5
 Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 9/80 (11%)
 Frame = -2

Query: 386  VVKDDHSLSPLAKDGVEKQADVVDKA---EDLVDLEGAINEEVLDDVGREGAID------ 234
            VV+D   +  + +DG   +  V +     E++V+ EG++NEEV ++V   G +D      
Sbjct: 2088 VVEDGSVIQEVVEDGSVTEEIVQENGSVTEEIVEEEGSVNEEVEEEVSVSGEVDETEYVT 2147

Query: 233  VESAPQHMVIEEPMEK*GPV 174
             E   +  V+EE +E+ G V
Sbjct: 2148 EEVEEEGSVVEEIVEEEGSV 2167



 Score = 34.7 bits (78), Expect = 3.2
 Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
 Frame = -2

Query: 425  ERESLATEGD*SNVVKDDHSLSPLAKDGVEKQADVVD--KAEDLVDLEGAINEEVLDDVG 252
            E E  ATEG    +V+D  +   +  D +  +  V D    ++ V+ +G+I EEVLDD G
Sbjct: 2692 EEEGSATEG----IVEDRLATEGIVDDILVTEEIVEDGLATDEFVEQQGSIIEEVLDDEG 2747

Query: 251  --REGAIDVESAPQHMVIE 201
               E  ++ E +P   ++E
Sbjct: 2748 SVTEEIVEEEGSPNEEIVE 2766



 Score = 33.5 bits (75), Expect = 7.2
 Identities = 17/55 (30%), Positives = 34/55 (61%), Gaps = 4/55 (7%)
 Frame = -2

Query: 386 VVKDDHSLS---PLAKDGVEKQADVVDKAED-LVDLEGAINEEVLDDVGREGAID 234
           + ++D S++   P+ +  V K+ D ++   D +V+ EG++NEEV ++V   G +D
Sbjct: 473 LTEEDQSVTKEIPVEEHSVFKEVDEIESVTDEIVEEEGSVNEEVEEEVSVSGEVD 527


>tr|B6QK69|B6QK69_PENMA Midasin, putative OS=Penicillium marneffei
            ATCC 18224 GN=PMAA_092250 PE=4 SV=1
          Length = 4898

 Score = 34.7 bits (78), Expect = 3.2
 Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 6/57 (10%)
 Frame = -2

Query: 398  D*SNVVKDDHSLSPLAKD-GVEKQADVVDKAEDLV-----DLEGAINEEVLDDVGRE 246
            D S  ++DD  LS LA++   EK  D V+K+ED V     DLEG  ++E  ++ G +
Sbjct: 4073 DISKDIQDDEDLSELAQEKNQEKSKDDVEKSEDAVNMDQEDLEGDFDDEQKEEEGED 4129


>tr|Q4UI87|Q4UI87_THEAN Tpr-related protein family member, putative
           OS=Theileria annulata GN=TA06265 PE=4 SV=1
          Length = 619

 Score = 34.3 bits (77), Expect = 4.2
 Identities = 17/57 (29%), Positives = 30/57 (52%)
 Frame = +3

Query: 231 HIYSTLTPNIIKHFFIDRPFKVDQILCFVNYICLLFHSIFSQRR*RMIILYHIALVS 401
           H+ +T TP + K ++I  P  + Q L F+ Y+ LLF  I    +  + + Y +  +S
Sbjct: 131 HVNNTFTPRLEKFYWIVVPSIITQWLNFLTYVILLFVYISGGDQGHLTVFYFVIAIS 187


>tr|B6PHK9|B6PHK9_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_107045 PE=4 SV=1
          Length = 274

 Score = 33.5 bits (75), Expect = 7.2
 Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
 Frame = -2

Query: 413 LATEGD*SNVV-----KDDHSLSPLAKDGVE--KQADVVDKAEDLVDLEGAINEEVLDD 258
           L T+GD  NV      +   +L PLA DGVE  + A+  D A+   D E A + E  DD
Sbjct: 62  LMTDGDNINVKLQPTKQSSFNLPPLAADGVEAAEDAEAADDADTAEDAEAADDAEAADD 120


>tr|B8MLH9|B8MLH9_9EURO Midasin, putative OS=Talaromyces stipitatus
            ATCC 10500 GN=TSTA_049490 PE=4 SV=1
          Length = 4822

 Score = 33.5 bits (75), Expect = 7.2
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 7/58 (12%)
 Frame = -2

Query: 398  D*SNVVKDDHSLSPLA--KDGVEKQADVVDKAEDLV-----DLEGAINEEVLDDVGRE 246
            D S  ++DD  LS LA  KD  +   D +DK+ED V     DLEG  ++E  +  G +
Sbjct: 3998 DISKDIQDDEDLSELAQEKDQEKSSKDDIDKSEDAVNMDQEDLEGEFDDEQKETEGED 4055